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LotjaGi3g1v0029000.1

Overview

Field Value
Gene ID LotjaGi3g1v0029000
Transcript ID LotjaGi3g1v0029000.1
Lotus japonicus genome version Gifu v1.2
Description Kinase family protein; TAIR: AT5G26150.1 protein kinase family protein; Swiss-Prot: sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52; TrEMBL-Plants: tr|A0A0B2RK63|A0A0B2RK63_GLYSO U-box domain-containing protein 51; Found in the gene: LotjaGi3g1v0029000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:3182852..3185810) extracted from Lotus japonicus Gifu genome v1.2.

CTTGAGTTTAGTTCTATACATCTACTTTGATCAATCTTTGACTTTTTCTTTTCTAGCTATAGTTGTTTCTTGAATGAAAT TTGTCATTTCTAAGGAATTTCTTCTCTCTATATATTTGTTATTTAAGAATGCTGAAGTTGTTGATATTTTAATGATGCAA AGTTTGAGTTCAGATTGCCGTAACTTTTTTCCCTCCCATTTCATTCATCAATAGCAATTAGCAAGTAACAAACTAGAGTC AAAAATAAATTAAGCATATCTGACATGATAACTTACTTTCCGCACATTTTTTCCTTCATAAAGGGATGATCAAATTTTCC CCTTTTATTGAGTTCTCTTACAGAAAAACATGGAGGTAGCTGTGAAGAAATTAAAGCTGGAATCGAAGAAATCAACAAAG GAGTGTATAAAGGCCAGCAGGGAAGCTATTGCAGATAAACAGAAGGTAATGTCATGTTTTAATTTCTATCTCACCAGATA GATTTTAGAATAATGCATTGAGAAATAGAATTTAAAACACTGGTATTTGTTATTTAGGCAATGGAACTTGAAAAGCATAG GCAAGAAGAACAGAACATGGAAAAAGCTAAACTTGTTGAAGAGGCTGCATTGGCTCTGGCAGAGGTAGAGAGCCAGATAA TCCATGCAGCTATGGAGTCAGAGAGAAAGCAGGCTGAAATCAGTGCTACGCATGATGAAGAAGAGATAAAGAGAGCATCA AATGCAAGCGCAGAAAACAATATTGAATTTAGAATATACGACATTAAAGAAATTGAAGTTGCAACCAATTTCTTTGACAC TGCTCTCATACTAGGTGAAGGTGGATATGGACCTGTCTTCAAAGGGGTGCTTGATCATACTATTTTTGCTGTTAAGGTCT TGAGACCAGACATAACCCAAGGGGAGAGGCAATTTAACCAAGAGGTAACCATAACAAGGAGAATGAGTTATCGTTTTTCC AGAGCCATTGATTAGAATTTATCTCTTTTTCAAATTGGTACCTGTCCTTTACAAATGGAGGATAGTTTTTGATAGATTGA ATACATAGGGCTATCATCCAGCACAGGCCAATGCATGCTCCAGGTTTAGTAAACCCACATCCCTTTTTTTATAAGGATTG TCAGCAGTCAGAACTGCTGTCAAGTTAACCAGATCTCAATTTATATTCCTTTACACCACTTATTTGTTACAAGTACAACC ACCTAAGTAATGTATTTTTAATACAAGTTAAAGTCAAAGCACTTTTTTCTCAATCTAAAGAAAGAGTTCATTCTATTTTT ATTCATTGGAACGAGTGAAATGTGTTTTTTTAGTTTAAACAACTGATATCTAGGAGTTATTCATTACAAAGAGTTCCTTC TCAGACATTTCTTGCTTTTTGGTTTAAACCATCTCATTATGATCTCTTTACTCTTTGCTACCATTCTTGTGCTTCTTATA TCATTGGCCTCATTTTCATATGGCAATGATCACTTTCTACTTTTCACCAATTACATAATCAAAGAGCAAACCACCATTTT AGTATCTAAAAGGTGTGGGGTCAGTCACTTTAGTCCTAAAGGATGAAAATCACCATTTTTGAAAATCATAATTTTCGTCC TTGAAAGATGTAAAAGGTGATCAAGTCAGTTAAGTCAGTTCTTGAAAAAGGTCTAGATTGATCTACTTGTTGGGACGAAA AAACCAATTTCCATCTTTCAGAGACTAAAATGATTGACTCCTTATCTTTCAAGGATGATTGTTTACTTCATAATCAAGCA TCACACAAATAAGGAGGCAACCACAACCAAAGATTACTTAAAAAGCAGTGTGGTGGTTATACATCTAATTTTACAATGTT GAATCCTAACATATGATTAAAGTCTTAACCTAGTGGCTTCAATGCAGGTTCAAGTTTTGAGAACCATAAAACATCCAAAT ATAATTCAACTTCTTGGTGCCTGCCCTGAGTACGGATGCCTTGTATACGAGCTCGTGCCTAACGGAAGCTTAGAAGACCG CCTCTTCCTGAAGGACAACAGCCCACCACTTCCATTGAAGATTCGGTTCAAAATAGCATCAGACATTGCCACAGGCCTTC TCTTCCTCCACAAGTTAAAGCCAGAGCCAATTGTGCACCGTGACCTCAAGCCAGCAAACATCTTGTTGGACAGGAACTTT GATAGCAAGATTGCTGATGTGGGTTTGGCCAGGCTTGTTCCTCCTTCTGTGGCCAACAAAAGTACTCAATACCACAAGAC AACAGCAGCTGGCACATTTTGCTATATTGATCCTGAGTATCAGCAAACAGGACTATTGGGTGTGAAGTCAGACATATATT CATTAGGTGTGCTGCTTCTGCAGATTATTACGGGAAGGCCTCCAATGGGTGTGACTCACCTTGTTGAGGAGGCTGTTGAA AAAGGTAACTTGGAAGAAGTGCTTGATCCAAATGTGACAGGTTGGCCTATTGAGGAGATTTATTCTTATGCTAGCTTGGC TTTGAAGTGTTGTGAGATGAGGAAAAGGGATAGACCTGACCTTGGTTCTGTCATTTTGCCTGAGCTGAATCGAATCCGAG ATGTAGTACTGGGATGAGACTCACACCCATTCATACTGCATCATCATGCAGTGGACTTACTGAATTTATAACATGTTTGG ATCAACTTCTTTTCCCCTCCCCAGAATTAATTCTGACAGCAACCACTTACAGAAGTCTCTCATCAGAATCAATTTTGGCT TCAGAATAAATCATTGAAGGATTTCCAAACACACACTTAATGAAACCTGCGTGTGCAATGTATGGAAGTGTTGACCTAGA CCTCTAGTTTAATACTTTAATGTGGTATGGTATAACAGGAAGGCTTGGTGTAATTGTTTCCCCCAAAACAAAACAAAAAT AAATTGTACAGTGCAAATTCTTTCCACAAATTTACATTTCTAGTGCAGCTGGTTAAGTAGTTTTTTGGATGCGTATAGT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0029000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGTAGCTGTGAAGAAATTAAAGCTGGAATCGAAGAAATCAACAAAGGAGTGTATAAAGGCCAGCAGGGAAGCTAT TGCAGATAAACAGAAGGCAATGGAACTTGAAAAGCATAGGCAAGAAGAACAGAACATGGAAAAAGCTAAACTTGTTGAAG AGGCTGCATTGGCTCTGGCAGAGGTAGAGAGCCAGATAATCCATGCAGCTATGGAGTCAGAGAGAAAGCAGGCTGAAATC AGTGCTACGCATGATGAAGAAGAGATAAAGAGAGCATCAAATGCAAGCGCAGAAAACAATATTGAATTTAGAATATACGA CATTAAAGAAATTGAAGTTGCAACCAATTTCTTTGACACTGCTCTCATACTAGGTGAAGGTGGATATGGACCTGTCTTCA AAGGGGTGCTTGATCATACTATTTTTGCTGTTAAGGTCTTGAGACCAGACATAACCCAAGGGGAGAGGCAATTTAACCAA GAGGTTCAAGTTTTGAGAACCATAAAACATCCAAATATAATTCAACTTCTTGGTGCCTGCCCTGAGTACGGATGCCTTGT ATACGAGCTCGTGCCTAACGGAAGCTTAGAAGACCGCCTCTTCCTGAAGGACAACAGCCCACCACTTCCATTGAAGATTC GGTTCAAAATAGCATCAGACATTGCCACAGGCCTTCTCTTCCTCCACAAGTTAAAGCCAGAGCCAATTGTGCACCGTGAC CTCAAGCCAGCAAACATCTTGTTGGACAGGAACTTTGATAGCAAGATTGCTGATGTGGGTTTGGCCAGGCTTGTTCCTCC TTCTGTGGCCAACAAAAGTACTCAATACCACAAGACAACAGCAGCTGGCACATTTTGCTATATTGATCCTGAGTATCAGC AAACAGGACTATTGGGTGTGAAGTCAGACATATATTCATTAGGTGTGCTGCTTCTGCAGATTATTACGGGAAGGCCTCCA ATGGGTGTGACTCACCTTGTTGAGGAGGCTGTTGAAAAAGGTAACTTGGAAGAAGTGCTTGATCCAAATGTGACAGGTTG GCCTATTGAGGAGATTTATTCTTATGCTAGCTTGGCTTTGAAGTGTTGTGAGATGAGGAAAAGGGATAGACCTGACCTTG GTTCTGTCATTTTGCCTGAGCTGAATCGAATCCGAGATGTAGTACTGGGATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0029000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEVAVKKLKLESKKSTKECIKASREAIADKQKAMELEKHRQEEQNMEKAKLVEEAALALAEVESQIIHAAMESERKQAEI SATHDEEEIKRASNASAENNIEFRIYDIKEIEVATNFFDTALILGEGGYGPVFKGVLDHTIFAVKVLRPDITQGERQFNQ EVQVLRTIKHPNIIQLLGACPEYGCLVYELVPNGSLEDRLFLKDNSPPLPLKIRFKIASDIATGLLFLHKLKPEPIVHRD LKPANILLDRNFDSKIADVGLARLVPPSVANKSTQYHKTTAAGTFCYIDPEYQQTGLLGVKSDIYSLGVLLLQIITGRPP MGVTHLVEEAVEKGNLEEVLDPNVTGWPIEEIYSYASLALKCCEMRKRDRPDLGSVILPELNRIRDVVLG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45647
1 388 388 3.3E-206 –
PANTHER
PTHR45647:SF51
1 388 388 3.3E-206 –
Gene3D
G3DSA:3.30.200.20
87 190 104 4.5E-23 –
SUPERFAMILY
SSF56112
100 376 277 6.88E-68
IPR011009
SMART
SM00220
118 389 272 6.7E-31
IPR000719
ProSiteProfiles
PS50011
118 381 264 35.651
IPR000719
Pfam
PF00069
123 372 250 2.4E-40
IPR000719
Gene3D
G3DSA:1.10.510.10
191 387 197 1.8E-49 –
ProSitePatterns
PS00108
236 248 13 -
IPR008271

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0029000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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