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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0030000 |
| Transcript ID | LotjaGi3g1v0030000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peroxisomal membrane protein 13; TAIR: AT3G07560.1 peroxin 13; Swiss-Prot: sp|Q9SRR0|PEX13_ARATH Peroxisomal membrane protein 13; TrEMBL-Plants: tr|I1MD37|I1MD37_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0030000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3251122..3254468) extracted from Lotus japonicus Gifu genome v1.2.
AAATATCAACCTTCAATTCCCATAAACAGACATATCAGAGGTCAACATTAGTCTAGTTTATTTTTAATTCTTAAATAAAA ATATTTCATTTAGTTGTTGTGAGAAAGAGAAGAGAAGATAGAGAAGAAGGTGTCTTGGTTGTCTTATTGGGTCCACTTTT CGAGAGTGAAATAAATATTTCATCTTCCTCACTTTCCTTCATTCTTTGTTCTCGCTCGCTCACAAAGAGCGCAGAGAGAT AAAATCCCATCACAATTCCAATCCATGGCATCAAATTCTCAACAATCAGGTTCGTTCTCTCTTCCCCTCAATCAATCAAT CAATCAATTTCACCATCGTATGCTTTGATTTCACAATTTTCACCCCCAATTTCTCCGTTAGGGTTTTCATCATCCGTCTC CGATCGTCTTCAAAATCATTCCTGAATCTTAAATTTTCAATTTTTTGCTTGTTTGTATAGACAATTCGAAATGGGTATAG TCTGAACAATCGAGTTTAGTTTCTGTGGAATTGTAATTTGATTGGTTTTCAATTTTTCATGTGCTTGTTGGTTATGAAGG GATTTTTCTTGTTGCAGCGAGTAATCCGCCACCGAAACCTTGGCAGCAAGGAGGTTCATCATCTGGGCCGACCGCGCCTT TTAAACCGCCCTCAGCTGGTAGCACAAGTGATGTAGTTGAGGCTTCTGGGACTGCGAGACCCGGTGAAATTGTTTCAAGT TCTGATAGGAGTGCAGCTGTTAACAGGAATACTCTTGCGAGGCCGGTTCCGACGAGGCCGTGGGAGCAGAACACCACCTA CGGTGGAGCCGGAGGTGATTATATATACATATATAGTTGAAACTTGAAAGTTTGTGTCATGTGGTATAGTACTAGTTTAC CTGTTTCGATGAATCTTTTTTAATTTTTGTTGTAATCTGCAGGGTACGGTTCTACGATGAATTATAATTCTGGATATGGG TCTGGATTGTATGGATCTTCTTACGGTGGAGGGTTAGGTGGGGGACTAGGTGGGGGGCTAGGAGGAGGGATGTATGGTGG GGGAATGTATGGTAGCAGTATGTACAACAGGGGAGGATATGGTGGGGGACTTTACGGGTCATCTGGTGGGATGTATGGAG GTGGAATGTATGGAGGTGGCTTAGGCGGTCCGATGGGTGGTTATGGCGGTGGCATGGGTGTTGGTCCTTATGGAGGTGAT CAAGATCCCAATAATCCGTACGGTGGTCCTCCGTCCCCGCCAGGATTCTGGATTTCTGTCATGCGTGTGGTGAGCTATAT GACATCTTTATGAATTTAGCTTTTCTTCCATAGGGATGATTGATCAGCATGTACAATGGACGTTGTTTTCTTGCATTTTG GTTTTCTAGATTGTTAAGTTACTTGTAATTCTCTACCACTGATAACTTATATTATGTTTGATGGTTTGTTAGTTCTAGGT CAAATTATCCTTTTTTTTATTAGACTGTATTTTGTCTTTTCATGTGATTGAGCTAAAAGAATCTGAATCTCATGTTTCAA TCATGGTGAAAATGGATCTTATTTAGGTACATTTTTGTGTACTCTGTTTAGTGTTTACACCAGTCCTGTCGATTTCCGCC ATTGCTTCTCTCATTTTTCTTCCTTTTAGATTCTTTTCACTTAGTTTCTGATTTTGTTGCTCAAAACATTGCTTTACATA TGTTTAACTTGTTTCCCTCTAATTGTCCAGATGCAAGGCGTGGTTAACTTTTTTGGTCGGATATCAATACTCATTGACCA GAACACACAGGCTTTCCATATGTTCATGTCTGCTCTTCTCCAGGTTTGTGTTCGTCGTTCTCAATCCATTTTATGAAATT TTTTATTTGCTAATTTTATACCCACCCTGCTCCTACTTAGGGCTGTTTTGAGATTCAAAGTGAAGTAGAAAATAAAATCA CATTTGCTTTGTTCATACGTTCTGAGTTGCTATGAAGTTTTTGCGTTGGGGAGGATTTCTTATACAAATATTGGTTTTGG AAGGATATATTTAACAAATCAGTCTTGTGTTGGGAAGTTATCTCAAATATGTTATGTGAAATTGTTCTCCTCAGGATATC ATCAGGAAATATAATTTTTTTGGTGTCAAATTATGGATAAGGGTTTTGAAGTGATGTACTGTCTTTGAGTACAACATCTT AGGGTTAGTTGGGTCATGTGTGATGAATGATAGTAAACCAAATGGAAGTAGCCAAACAATCTAATTTAAGCACACACTTA TTCATGGATCTGTTATTTCATATGAGTGCTTTCAGTCTATCTTGACTGATATTTATTTTAATGATAGTACAACATCTTAG GGTTAGTTGGGTCATGTGTGATGAATGATAGTAAACCAAATGGAAGTAGCCAAACAATCTAATTTAAGCACACACTTATT CATGGATCTGTTATTTCATATGAGTGCTTTCAGTCTATCTTGACTGATATTTATTTTAATATACCAGAAGCACAGTGCAT GTTGTCAAATCTGGGAACCCACTCTGTAACTACTTGCATTATATCATGTGTTGTGAATATAGCTTAACTTTAAATTATTA CTTGGTCTCTGTACAGCTTTTTGATCGATCCGGTTTATTGTATGGAGAGCTTGCTAGATTTGTGTTGCGGCTGCTTGGGA TTAAAACCAAGCCGAATAAAGTTAACCCACAAGGTCCAAATGGACATATGCTAGGTCCAAATGGACATCCACTACCTGGA CCACACAACTCTTCTGCAAATGTAAACGCTATTGAGGGAGCCAAGCCTGCTTCTGGTGGTTGGGACAACGTCTGGGGAAA TGATGCCAATCAGTGATAGTGGTAAACTTAGTTTGATTAAAGAGATCGTCCATATACATTCAGAAAAAGAAATAGCAGCA TTCCAATTGTATATTCATGGATTCTAAGTTCAGTGTGCTGTTTTTCTTTACTTGGATTAGTTCTTGGTTCTACTGGAAGC GGGATCTTCTGCCACCGTCCCGAAAATATACCTTGCAAGCGTTTGCTTTGGATCCGGAGGATGCTGCTATGTGCTAAGTA CATGTATTATTTTGTATCTCGAGAGTGAATGTAATCTTGCATACCTGCTGAAAATTTTCAGGACCATGAATTTCGTTTCT TTTCATGTACTCTTTAGGCGTTTAACATTCATCAAAATTGCCTTTACATGTGGATTTGCCAAACATATCGTTATGATTAT ATTATTTATTTATTAAGTATGAGCTATATTTTATTTCCATCTTTGGTGCTAGGAAAATTGAGTCCTTAATTCTGCGGGTT TCTTTCTGATACACATCTTACTGACAATTGGCTAGTAAAAAACAGTGTGGAAAAATGTATATGCAGC
CDS sequence (LotjaGi3g1v0030000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCAAATTCTCAACAATCAGCGAGTAATCCGCCACCGAAACCTTGGCAGCAAGGAGGTTCATCATCTGGGCCGAC CGCGCCTTTTAAACCGCCCTCAGCTGGTAGCACAAGTGATGTAGTTGAGGCTTCTGGGACTGCGAGACCCGGTGAAATTG TTTCAAGTTCTGATAGGAGTGCAGCTGTTAACAGGAATACTCTTGCGAGGCCGGTTCCGACGAGGCCGTGGGAGCAGAAC ACCACCTACGGTGGAGCCGGAGGGTACGGTTCTACGATGAATTATAATTCTGGATATGGGTCTGGATTGTATGGATCTTC TTACGGTGGAGGGTTAGGTGGGGGACTAGGTGGGGGGCTAGGAGGAGGGATGTATGGTGGGGGAATGTATGGTAGCAGTA TGTACAACAGGGGAGGATATGGTGGGGGACTTTACGGGTCATCTGGTGGGATGTATGGAGGTGGAATGTATGGAGGTGGC TTAGGCGGTCCGATGGGTGGTTATGGCGGTGGCATGGGTGTTGGTCCTTATGGAGGTGATCAAGATCCCAATAATCCGTA CGGTGGTCCTCCGTCCCCGCCAGGATTCTGGATTTCTGTCATGCGTGTGATGCAAGGCGTGGTTAACTTTTTTGGTCGGA TATCAATACTCATTGACCAGAACACACAGGCTTTCCATATGTTCATGTCTGCTCTTCTCCAGCTTTTTGATCGATCCGGT TTATTGTATGGAGAGCTTGCTAGATTTGTGTTGCGGCTGCTTGGGATTAAAACCAAGCCGAATAAAGTTAACCCACAAGG TCCAAATGGACATATGCTAGGTCCAAATGGACATCCACTACCTGGACCACACAACTCTTCTGCAAATGTAAACGCTATTG AGGGAGCCAAGCCTGCTTCTGGTGGTTGGGACAACGTCTGGGGAAATGATGCCAATCAGTGA
Protein sequence (LotjaGi3g1v0030000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASNSQQSASNPPPKPWQQGGSSSGPTAPFKPPSAGSTSDVVEASGTARPGEIVSSSDRSAAVNRNTLARPVPTRPWEQN TTYGGAGGYGSTMNYNSGYGSGLYGSSYGGGLGGGLGGGLGGGMYGGGMYGSSMYNRGGYGGGLYGSSGGMYGGGMYGGG LGGPMGGYGGGMGVGPYGGDQDPNNPYGGPPSPPGFWISVMRVMQGVVNFFGRISILIDQNTQAFHMFMSALLQLFDRSG LLYGELARFVLRLLGIKTKPNKVNPQGPNGHMLGPNGHPLPGPHNSSANVNAIEGAKPASGGWDNVWGNDANQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 309 | 309 | 5.0E-145 | – | |
| MobiDBLite | 1 | 64 | 64 | - | – | |
| MobiDBLite | 1 | 86 | 86 | - | – | |
| PANTHER | 1 | 309 | 309 | 5.0E-145 | ||
| MobiDBLite | 260 | 313 | 54 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Peroxisome | A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Protein import into peroxisome matrix, docking | The process in which a complex formed of a peroxisome targeting sequence (PTS) receptor bound to a PTS-bearing protein docks with translocation machinery in the peroxisomal membrane. |
Expression pattern of LotjaGi3g1v0030000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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