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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0031100 |
| Transcript ID | LotjaGi3g1v0031100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRAS family transcription factor; TAIR: AT4G37650.1 GRAS family transcription factor; Swiss-Prot: sp|Q9SZF7|SHR_ARATH Protein SHORT-ROOT; TrEMBL-Plants: tr|A0A0L9UPC5|A0A0L9UPC5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0031100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3358953..3361196) extracted from Lotus japonicus Gifu genome v1.2.
ATAATATCTGTCGTACTACAGAAGCAATTATTCATCAAACTATATTAGCCATGATCACAAGTTGTGAGTGTGACAATGAC CCTGTATAAAAGATTTAGAACTCAAAACATATTGCAATTCCTCTGAGCACAGGTGCCTTAATTACTTCCTTGGAATTCAA ACAGTGCCACATGGTCAAAGGAAACCATAATCCACACACCAAAGAAAATATGGACATTACTCCTTATACTTCAAAGAAAA CACACTTCAACCACCACCATCATGAAGCACCCATAGACTTGCACAGGATCAACCACCCCCAACACAGTAATCCGACATCA ACAAGCCGTTCTTCAGAGTCTAGTGAAACCTGTGATGATGGAAAATGGGCCTCCAAGCTTCTGAGAGAGTGTGCCACAGC AATATCAGAGAGAAACTCAACAAAAACTCACCATCTTCTATGGATGCTAAACGAACTTTCTTCCCCTTATGGAGATCCTG ATCAGAAACTAGCTTCTTACTTCTTGCAAGCTCTGTTTTGCAAGGCCACAGACTCTGGCTTCAAGTGCTACAAGACCCTC TCCTCAGTTGCTGAGAAAAACCACTCCTTTGATTCAGCCAGAAAATTGATCCTCAAGTTTCAAGAGGTGAGTCCTTGGAC AACCTTTGGACATGTGGCTTCAAATGGTGCCCTTTTGGAAGCCTTAGAAGGAGAGACCAAAATTCACATAGTTGATATCA GCAACACCCTTTGCACTCAGTGGCCTACTCTGTTGGAAGCTCTGGCTACAAGAAATGATGAAACTCCTCACTTGAAACTC ACTGTTGTTTTGTTGAGTAATAAGATTGTAGGGTCTGTGATGAAGGAGGTTGGTCAACGAATGGAGAAGTTTGCAAGGCT AATGGGTGTTCCCTTTGAGTTTAATGTGGTTAGTGGGTTGAGGAGCCTCACAAAAGAAGGGTTAGGAGTTCAAGAGAATG AGGCAATTGCTGTGAATTGTGTTGGTGCATTGAGGAGAGTGGAGGTGAAAGAAAGGGAAAGTGTGATTGGCATGTTTAAA TCACTTAGTCCTAAAGTGGTGACTTTTGTTGAGGAAGAAGGTGATTTTGTTACCTCAAGAGATGACTTTGTGAAGAATTT TGAAGAGTGCCTTAAGTTCTATAGCCTCTACTTTGAGATGTTGGAGGAGAGTTTTCCTCCAACAAGCAATGAGAGGTTGA TGTTGGAGAGGGAGTGTTCAAGAAGCATAGTTAGGGTTTTGGCTTGCAATGATGGTGATGAAGATGGTGGTGGTGGTGGT GATCAAGGTGGTGATTGTTGTTGTGAGACAAGGGAGAGAGGGACACAATGGTCTGAAAGACTTGGGAGTGCGTTTTCCCC TGTTGGATTCAGTGATGATGTAGTGGATGATGTCAAAGCATTGCTCAAGAGGTACCAAGCTGGGTGGTCACTTGTGGTGC CTCAAGGAAATGATCATAATCTCTCAGGAATATATCTCACATGGAAGGAGGAACCAGTAGTTTGGGCATCAGCATGGAAG CCCCAGCTAGCTACTTGAATATGTGTCTAGCCAGTATCATTATGTTTATTATGTTTAGTGTAACTCGTTCAAAAACTACA GTTAAGACAAAATAATGATGGACAGAAGGAACTTCTCTTGTACTTCTGTCCATCATGATTTTACCTTTACTGCGATGTTT AAACGAGTTTTCAAACATGCATTTAGTCTTGTTTGGAAATTTTTCTACAATTGATTTCTAAAATCTGAATCAATTCTGGA AAGAAGCTTCTATGATTAGCTTCAAGTTTCAGAATTCATTTTGATAAAAGAAAAATTGATGCAAACATATACTATCAGTG CCATGCCATATAAATCATATGGTATCTGGATAGGCTAATACTCAAGGGACAGAAATTTCTCACTGGAAAATAAGGTTTGG CTTGCCCTATGGATATAGCAATTAGCAATGGCTATATATTGAAACTGATCTGGATTTTTCTTTTGACTTTCTCTCCTGAT TCTTGCATAGTACTTTGTAATCTTTCTCCTGTCCAACTCCTCTAGAGAGGTAGCATTTTGCTTGGGAGTTTGTGTTGTTA ACTATATGGCTTTTTACACTTTTATATATTATAATGATTTAAGTTCATTGCTATTGTTTGAAGGTGTTTGCACCTGTGCT CTTTTTATGAATTCCATGGCTTTCCTGCTTCCTGTACATGGGGAAGGGGAATTGAGTTTGGTGCCCCACCCCTTAGGCTT TGCA
CDS sequence (LotjaGi3g1v0031100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCAAAGGAAACCATAATCCACACACCAAAGAAAATATGGACATTACTCCTTATACTTCAAAGAAAACACACTTCAA CCACCACCATCATGAAGCACCCATAGACTTGCACAGGATCAACCACCCCCAACACAGTAATCCGACATCAACAAGCCGTT CTTCAGAGTCTAGTGAAACCTGTGATGATGGAAAATGGGCCTCCAAGCTTCTGAGAGAGTGTGCCACAGCAATATCAGAG AGAAACTCAACAAAAACTCACCATCTTCTATGGATGCTAAACGAACTTTCTTCCCCTTATGGAGATCCTGATCAGAAACT AGCTTCTTACTTCTTGCAAGCTCTGTTTTGCAAGGCCACAGACTCTGGCTTCAAGTGCTACAAGACCCTCTCCTCAGTTG CTGAGAAAAACCACTCCTTTGATTCAGCCAGAAAATTGATCCTCAAGTTTCAAGAGGTGAGTCCTTGGACAACCTTTGGA CATGTGGCTTCAAATGGTGCCCTTTTGGAAGCCTTAGAAGGAGAGACCAAAATTCACATAGTTGATATCAGCAACACCCT TTGCACTCAGTGGCCTACTCTGTTGGAAGCTCTGGCTACAAGAAATGATGAAACTCCTCACTTGAAACTCACTGTTGTTT TGTTGAGTAATAAGATTGTAGGGTCTGTGATGAAGGAGGTTGGTCAACGAATGGAGAAGTTTGCAAGGCTAATGGGTGTT CCCTTTGAGTTTAATGTGGTTAGTGGGTTGAGGAGCCTCACAAAAGAAGGGTTAGGAGTTCAAGAGAATGAGGCAATTGC TGTGAATTGTGTTGGTGCATTGAGGAGAGTGGAGGTGAAAGAAAGGGAAAGTGTGATTGGCATGTTTAAATCACTTAGTC CTAAAGTGGTGACTTTTGTTGAGGAAGAAGGTGATTTTGTTACCTCAAGAGATGACTTTGTGAAGAATTTTGAAGAGTGC CTTAAGTTCTATAGCCTCTACTTTGAGATGTTGGAGGAGAGTTTTCCTCCAACAAGCAATGAGAGGTTGATGTTGGAGAG GGAGTGTTCAAGAAGCATAGTTAGGGTTTTGGCTTGCAATGATGGTGATGAAGATGGTGGTGGTGGTGGTGATCAAGGTG GTGATTGTTGTTGTGAGACAAGGGAGAGAGGGACACAATGGTCTGAAAGACTTGGGAGTGCGTTTTCCCCTGTTGGATTC AGTGATGATGTAGTGGATGATGTCAAAGCATTGCTCAAGAGGTACCAAGCTGGGTGGTCACTTGTGGTGCCTCAAGGAAA TGATCATAATCTCTCAGGAATATATCTCACATGGAAGGAGGAACCAGTAGTTTGGGCATCAGCATGGAAGCCCCAGCTAG CTACTTGA
Protein sequence (LotjaGi3g1v0031100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKGNHNPHTKENMDITPYTSKKTHFNHHHHEAPIDLHRINHPQHSNPTSTSRSSESSETCDDGKWASKLLRECATAISE RNSTKTHHLLWMLNELSSPYGDPDQKLASYFLQALFCKATDSGFKCYKTLSSVAEKNHSFDSARKLILKFQEVSPWTTFG HVASNGALLEALEGETKIHIVDISNTLCTQWPTLLEALATRNDETPHLKLTVVLLSNKIVGSVMKEVGQRMEKFARLMGV PFEFNVVSGLRSLTKEGLGVQENEAIAVNCVGALRRVEVKERESVIGMFKSLSPKVVTFVEEEGDFVTSRDDFVKNFEEC LKFYSLYFEMLEESFPPTSNERLMLERECSRSIVRVLACNDGDEDGGGGGDQGGDCCCETRERGTQWSERLGSAFSPVGF SDDVVDDVKALLKRYQAGWSLVVPQGNDHNLSGIYLTWKEEPVVWASAWKPQLAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 33 | 62 | 30 | - | – | |
| MobiDBLite | 42 | 57 | 16 | - | – | |
| PANTHER | 42 | 450 | 409 | 5.9E-208 | – | |
| PANTHER | 42 | 450 | 409 | 5.9E-208 | – | |
| ProSiteProfiles | 58 | 450 | 393 | 67.757 | ||
| Pfam | 69 | 450 | 382 | 4.4E-93 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0031100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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