Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0031400 |
| Transcript ID | LotjaGi3g1v0031400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ycf1; TAIR: ATCG01130.1 Ycf1 protein (ChrC); Swiss-Prot: sp|Q9BBN6|TI214_LOTJA Protein TIC 214; TrEMBL-Plants: tr|I3T5M7|I3T5M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0031400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3376616..3377102) extracted from Lotus japonicus Gifu genome v1.2.
ATGATTTTTCAATCTTTTATACTGGATAATCTAGTATCCTTATGCCTCAAGATAATTAATTCGGTCATTGTGGTCGGACT CTATTATGGATTTATGACCACATTCTCCACAGGGCCCTCTTATCTATTCCTTCTTCGAGCTCACGTTATGGAAGAAGGGA CCGAGAAGAAAATATCAGCAACAACTGGGTTTATTACGGGACAGCTCGTGATGTTCATATCGATCTATTATGCGCCTTTG CATATAGCATTAGATAGACCTCATACAATAACTGTCATAACTCTACCGTATCTTTTATTATATTTCCTCGGCAATAATCA AAAAAACTTTTTGAATTATGTATACAAGAATCAAAATTCAATACGTCATTTTAGTATTCAAAGAATATTCTTTCAGAATC TTTTTTTCAGTTATTAAACCCCTTTTTTTTACCAAGTTCAATCTTAATGAGATTAGCGAACATTTATATCTTTCAATCAA ACAATAA
CDS sequence (LotjaGi3g1v0031400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTTTCAATCTTTTATACTGGATAATCTAGTATCCTTATGCCTCAAGATAATTAATTCGGTCATTGTGGTCGGACT CTATTATGGATTTATGACCACATTCTCCACAGGGCCCTCTTATCTATTCCTTCTTCGAGCTCACGTTATGGAAGAAGGGA CCGAGAAGAAAATATCAGCAACAACTGGGTTTATTACGGGACAGCTCGTGATGTTCATATCGATCTATTATGCGCCTTTG CATATAGCATTAGATAGACCTCATACAATAACTGTCATAACTCTACCGTATCTTTTATTATATTTCCTCGGCAATAATCA AAAAAACTTTTTGAATTATGTATACAAGAATCAAAATTCAATACGTCATTTTAGTATTCAAAGAATATTCTTTCAGAATC TTTTTTTCAGTTATTAA
Protein sequence (LotjaGi3g1v0031400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIFQSFILDNLVSLCLKIINSVIVVGLYYGFMTTFSTGPSYLFLLRAHVMEEGTEKKISATTGFITGQLVMFISIYYAPL HIALDRPHTITVITLPYLLLYFLGNNQKNFLNYVYKNQNSIRHFSIQRIFFQNLFFSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 137 | 137 | 4.8E-64 | ||
| PANTHER | 1 | 137 | 137 | 4.8E-64 | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 18 | 45 | 28 | - | – | |
| Pfam | 21 | 137 | 117 | 4.6E-62 | ||
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 46 | 56 | 11 | - | – | |
| Phobius | 57 | 80 | 24 | - | – | |
| TMHMM | 58 | 80 | 23 | - | – | |
| Phobius | 81 | 85 | 5 | - | – | |
| Phobius | 86 | 103 | 18 | - | – | |
| TMHMM | 87 | 104 | 18 | - | – | |
| Phobius | 104 | 138 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0031400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…