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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0035300 |
| Transcript ID | LotjaGi3g1v0035300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|A0A072VI40|A0A072VI40_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi3g1v0035300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3790460..3796207) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGGGTTAAAATTTCAGCTTTCTCTTTCACAAATCACAAAACTATCACTGTCACTGTGGTCTCCATCTCCATGAACAC ACCTCGTTCGAAGAAGTTGCCGCCGCGCACGCATCTCCCCGACGAGCTGACTGCGGAGGTCCTATCATGGCTTCCGGTGA AATCCCTGATGCGACTGAGTTCCGTCTGCAAATCCTGGAACAAACTCATCACCTCCGATCAAACCTTCATCAAATCACAC CTTGACCGATCGGCATTGCGCAACCCCCAACTCTTGTTAGAATGTGAAGACTCAAACCACCACCCCCACCGTGGTTTCTG TGTCACACAAGTGTCAGGTTTAGCTGGTGCTGACCCATGGATCTCGCTTGCCCATAACCCTCGCCACCGATTGAGGGAAT ATTTTGACAGCTACGACGTCGTCGGTTCTTGCAATGGGTTGATATGCTTGGAAGTTTTTCCTTATCGCGCTAGCGTTGGA CATGGATGGGTACATATCTGGAACCCAGCCACAGGGTTAATGTCTGAAAGATTAGTGTCGTTTTGCTATGGAAGAAGATA TTTCAGGTACAAGATGAACTTCTGTTATGATAATTCAACCAACACTTACAAGGTGGTGTACTTTAGAATTGATAAAACAG ATAGAGCTTCACATGTCCAAATCTTCACCTTGGGTGGTGGTTCTAATGGTTGGAGAGACATTCAAAATTTCCCACTGCTT CCATTTAGCTATGATGATTCGGGTGTAAATGATGGGGCGCATTTGAGTGGCACTATTAACTGGATGGCATCTCGTCGTGA TGAATCCGCGCCTCATTATAATCCAGAGACTATTACTGTTGAACAACTTGTCATCCTTTCACTTGATCTTGGGACCGAGA CGTACACCCTCTTGTTGCCGCCTAAGGGTTTAGATCAAGTGCCTTGTGTTCTGCCAAGGGTTTGGGTTTTCATGGACTGT CTGTGTTTTTCTCATGACTCAAACAAAACTCATTTTGTTATATGGCAGATGAACAAGTTTGGGGATGCAGAGTCTTGGGT TCAAATTTTGAAAATTAGTTATCAGGATATTCCAATGCGTCGCCTTTCACCATTCACTCATCATAAAGAGTGTTTCCTTC ATCCATTAAGTTATGCCTATCGATTATTTTACAATGGTGATACACTGGTATTGGCGGTTGGTCGTCAAGCAATACTCTAT AACAGGAGCTCCAACACATTTGAGCAACCTACAACTACAAATAGAGAATTTTGTCGGTACAAATTTTCTTGGTACTTAGC CTTGGATTATGTTGAAAGCTTGGTTTCGCTGTATTAAGAGTAAGTTCTTGAAGAACAATTACTTGGGAATCATGTTTTTT TTTTAAAAATTGTTAGCTATTTATCATTGACTTGTGATTATTATTATTTAAGATGACTTAGTTAGACTTTATTGTTATGA TTATCTATTTGCCTTTGTTACTGGTTGGAAAACCTCTGGAAGATGAATATTGGGTTGGTCTTCGGAACATTTTAAGCAGA ACAAGAAAAGGTCCTGCACAAAAACATGGGAAAAGTGAAAGAACAAAAGAGATAGGTATGGTAAAAAACAGCTTTATACA TAGAAGAGGAAATAAATAAAAAATCGTCAAACTTATGTTTACTTCATTTACTCCAAAATTTTGTTTTAGATATTAATACA TTGAATAAACTAAGTGATCCTCCTTATCTTTGTATACTATAAGCTTAAAGATGATTTTGCAAAATTAATATATATGGGAT ATTCTTTTTGATCTGATTTTGTTACATCTGTTCCAGCACATACGCACTAATTTTGGTAGCAAGAAATGGGGGGAGTGTAT TCTATTTCTATAATTGATAATGATACTGCTATTGAATCTATTTTTAATAACACAACCCTTGTGTCACCTTTGGTAAAGGG TTCTGTTCATGATATCCTGGTTGAAATCAATTTCTTTCTATGCTTACAGAGGGAGAGGGGTATTATGGTTGCTGTTTGGA GCATTATGCATTCAATTCTTGCCCTTTTTTTTGTGTTTTGCTGTTTTGTTCTGTAATCGAATGAAGTTGTTTTAATAATA GATCTGCAACCCAACTTTAACATGTAGTGAGTGAATTATTGATGGAACATAGTGGGATGATAGGAAGAAAGTGAGAAAGG GACTAATTTTGTAGAGGCATTCTTGGCTCTCTTCTCTTGAGGTCTATCTTTTATGTTACTTCAGAAATATTTGTAGCAAC CTATTGTTTCATTACTATAATGTTGTGCAACTCTACTTATGCTTGTGTAATGGTAGGTAAATGACTAAAAATCTTTATAA GCAATTTAAGTGCACTTTTTGGTTGACCATTTGGGTACATTAGAAGAAGTAATGCTGTAGTTGCACAAGATCCACTTGAT AATCTTTATGGTTGTGTCCCCAACTCTTTTGTTGGTTTATTTGTCATAACGTGTCATATTTTACCTATCCATGGTGTTAG GGTTAACATCAAGTTAGCACCAGAGGAGATCATTAGGGCATACCTTGCACCTGCTTTATAGTTTATAATTGAGTTTAAAT ATTACATGAGAAAATTGTTCACTTTTTTTTTTTGTATTTTTACTGCCATATGACCACTGCTTTCAAAGACATGCAAGAGG GCCTGGCTAAGTTTTTGTTTTCTAATCTTTGGTCATGAGTAATAAAGAAGGGTGAGATTGTACGTTTTTAACCTCTAGGT TATGTTACAAGTTTCAGCTACAACTTATGGTAGCATCTTCATATTATCTATTGAAAGTTAGAAATATCAGTCTGTTTCTA GATCTTCATAATACATTTCTATTATAGTTTTCCCATTTAAGTCAACTTTTATTGTGGCGAGGACATTCATTTGTTATATT GGTATTAAAGGTTCATGTACTTATTTTATTTCCATATTCAGGAGACAGTCCAGTAAAATAATTACATAATTTATGGCTTC CTCAAGGCAGGGTTAAATGTTTCAACCTGTGTTTGGAAACAAGTTAGAAGTACAATAAAAGGATTTCAAGCTAACATAAG CATCAAGTTTCTTCTACTTCTCTCAAAATCCGTTTAAAAAGTACCTTCACTTTTTAGAAAACGGACTTCCAAACATAGCC TTGGTATAGCTAACATACCTAGAGCATGTGCAGTATTCTTCATTCCCTGAACTTCTGGCATCTGGGGATTCATTGATCCT TCATGCTGCTGCTGCCATTGTTGAGCCAGCCCAGATGTGTCACAGAATGTGAACTATATCCCATTAGCAGCCGTCAATTT CTGCCACATTTTGTTTGAAATTTTTTCCTAGAGTTGCCCATTTCATCTTATATGCATTTGGGAGTTCAGACCGTGTGGTA ATTGGATTATCAATGTACCATTCGCAGCCATTCTTGATTTTTTCAATTATCAATTTTCTAGTTCTTGTTCATGTATTTTG ATTTCTCATAGCAATCTTAGATAATAACTTCGATTTTTGGCCTTCTCATGTACTAGATAGCACCTATTAATATATGCATT TGTGTTGATGTTAGTTGTTAAGTTTTTAGATAGGGAAACTAAAACACCAGTGCGCACGTTTTAGGACTGCAGTGAGGGTG CAAAAATTACCGTAAGCCTCTCAGAAAGAAATTGGAGATATAGGTTATATGATATGCTAGATGGTAAAATAATTAGCTAG TTATTTTTAATGCTAGATGACCCCTATAAATTTATGCACGAAGAAAAGGTGAAAGCTATGTTGTCTGGTGTAGTTTCCAC ATCCATTCACGGACAAAGGAAGTTTATCCTCTGTTGTTAACTTGATATATAGTGATATAGGTTGGGAAGATTAATGTGGA ATAGTTAGCCGGGAGAAATCTAAATTTTTATTTTATGTTGTGTTTTTAGCCGTTTTTATATAATTTTCCTTTAATTTGTT GAACTTTAATGTTTATTTTGCGTAGAAGGCAAACCTGCTGGTGTGTTATGATATTATTATTTACATGAAAGTAGCTATCT TGTTCGTATGTGGATATTAACCTGCCCTGTTTTGAACGACATCAGAGCTTGACTTAATCGTGATTGGCAGGTTGTGCTTG ATGGTATCAGTAGAGATGCGAATGCTCCGGCAGATGCCTTGGCGCGAGCAGGTGCTTCTTTTTCCCTAGCTTGTGTGCGG AGCTTGGAGAGGCCTTTGGTAGAACTGGAACCTTTACTGCTTTGGGATTCTCGGTTCCCTATTTAGTGTTGTTTTTTCTT GTAATTTTCCGTAGTAGCAAAAAATAAAGTATGTGGATATTAACTTGGAGTTGGTTTCTGAGGTTGGCAGCCTGTGTTAA GTTGAAGAATTCATCCTAATAAAACTTGTCCTGAACTAAAACTAGCGAGAAATCTGATCTTAACAATCGGATTATTTTAT CTATATTTTGTCCGCCCAAGAGAGCATTCTTTTTTGATCAAGAGCTGAGGATTTATTTTATCTAGGGAACTTCTGCTGTT AGGTTCTTTGGTAGTAAGATGGATAAGAGGTGAATGATTAGGGATCATTATATGAAAGTTCTGTCAAATGCATTGATTTT GCAATTTTCGAAGGCGTTTTCTTTTGAAAAGATTGGAATTTTTAGTTTTTTAAGTTTTGGATACTATTTAAGCTTGATAT ATATATATATATATATTGTTTAATTTCTTAGAAAAGAGAAGGTGAGGATTGGTATGATGGTTCAAGGGGTTGAAGAAGGT GATGTTGCCAGGTTGCTACATTCGACCAAAGTATGAAGGGATGGAAGAGATGAAGATTATGGAAGGGTTGAGGGTGATAG TTTGAGCTGTTATAGATATAGTGTGATTTCATAACTTTATGGTAGTGGAGTTTGATAATTCAATCATTTACATTTTTGAG AGCATAATCATGATTTAGTTCATTCCATATTACTTGATCGATTACGTTCATGTTCAACAGCAATTAGATTCCATCTTAAT GTGATATCTAGTTAACATAAATTTTGGCCCCCCTTTTGGAAAATTTATTACATTTTGCAGACCGAAGGAATAAATTTGAT TTTGTTGCACATTTTGCAGTGGTATCCTTCTTTTAATTTCAATATATGTTTCACATTTGAGTTAAAGTATCTATTAAATT GGTCTGAACTGCCCGATACACCAGGGAGACTCGTTGGCAAGGGCGAGTTGATGCGACTGAAGTGCGTATGGGAGCAGTGG AAAACAGAGTGCACGAGCTCATTCAATCGATGACGGGTTTGCAACGGATTGTGGAGATGGAGAAGCAGAACAGACAGAAA ATAGGCCAATATAGTGGAATCATTAGGCCAATAAAAGTAAGATTTTTTACAAATTGAAGTAGGCTGAAAAGAAAAAGGAA AATAGGAATCTGGAAAGGATCTTTTGGCTGTTGAAGAGAATGGTCTGGACTGGAATGTCATATTTATGATTCCCCCCAAA ATATAAATACAAAACACAAAATCTAAAATGAAACTATCAAAGTAGACTCTCAAAGAGAGCTAATTGTGTGTTAAAGCTTG ATCATCAAAGTGTGTCAGGTAAGTAGAAAAGGAAACAACTTGGCCTTCTTAACCGGAATAGAGGTTTGAAATTGAAACTC ATCATCATCCCTGATGAAACTCCACCAAATGTAAGTTAGAGGAATAGTGGTGGCATGCCAAAAAGCATGTGCATCCAGAA TATGGAGGGATTTTTTTTAAGAAGCATTGCAAGACGACCGGGAGCAACAACCAGCCATAGCTGATACC
CDS sequence (LotjaGi3g1v0035300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACACACCTCGTTCGAAGAAGTTGCCGCCGCGCACGCATCTCCCCGACGAGCTGACTGCGGAGGTCCTATCATGGCT TCCGGTGAAATCCCTGATGCGACTGAGTTCCGTCTGCAAATCCTGGAACAAACTCATCACCTCCGATCAAACCTTCATCA AATCACACCTTGACCGATCGGCATTGCGCAACCCCCAACTCTTGTTAGAATGTGAAGACTCAAACCACCACCCCCACCGT GGTTTCTGTGTCACACAAGTGTCAGGTTTAGCTGGTGCTGACCCATGGATCTCGCTTGCCCATAACCCTCGCCACCGATT GAGGGAATATTTTGACAGCTACGACGTCGTCGGTTCTTGCAATGGGTTGATATGCTTGGAAGTTTTTCCTTATCGCGCTA GCGTTGGACATGGATGGGTACATATCTGGAACCCAGCCACAGGGTTAATGTCTGAAAGATTAGTGTCGTTTTGCTATGGA AGAAGATATTTCAGGTACAAGATGAACTTCTGTTATGATAATTCAACCAACACTTACAAGGTGGTGTACTTTAGAATTGA TAAAACAGATAGAGCTTCACATGTCCAAATCTTCACCTTGGGTGGTGGTTCTAATGGTTGGAGAGACATTCAAAATTTCC CACTGCTTCCATTTAGCTATGATGATTCGGGTGTAAATGATGGGGCGCATTTGAGTGGCACTATTAACTGGATGGCATCT CGTCGTGATGAATCCGCGCCTCATTATAATCCAGAGACTATTACTGTTGAACAACTTGTCATCCTTTCACTTGATCTTGG GACCGAGACGTACACCCTCTTGTTGCCGCCTAAGGGTTTAGATCAAGTGCCTTGTGTTCTGCCAAGGGTTTGGGTTTTCA TGGACTGTCTGTGTTTTTCTCATGACTCAAACAAAACTCATTTTGTTATATGGCAGATGAACAAGTTTGGGGATGCAGAG TCTTGGGTTCAAATTTTGAAAATTAGTTATCAGGATATTCCAATGCGTCGCCTTTCACCATTCACTCATCATAAAGAGTG TTTCCTTCATCCATTAAGTTATGCCTATCGATTATTTTACAATGGTGATACACTGGTATTGGCGGTTGGTCGTCAAGCAA TACTCTATAACAGGAGCTCCAACACATTTGAGCAACCTACAACTACAAATAGAGAATTTTGTCGGTACAAATTTTCTTGG TACTTAGCCTTGGATTATGTTGAAAGCTTGGTTTCGCTGTATTAA
Protein sequence (LotjaGi3g1v0035300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNTPRSKKLPPRTHLPDELTAEVLSWLPVKSLMRLSSVCKSWNKLITSDQTFIKSHLDRSALRNPQLLLECEDSNHHPHR GFCVTQVSGLAGADPWISLAHNPRHRLREYFDSYDVVGSCNGLICLEVFPYRASVGHGWVHIWNPATGLMSERLVSFCYG RRYFRYKMNFCYDNSTNTYKVVYFRIDKTDRASHVQIFTLGGGSNGWRDIQNFPLLPFSYDDSGVNDGAHLSGTINWMAS RRDESAPHYNPETITVEQLVILSLDLGTETYTLLLPPKGLDQVPCVLPRVWVFMDCLCFSHDSNKTHFVIWQMNKFGDAE SWVQILKISYQDIPMRRLSPFTHHKECFLHPLSYAYRLFYNGDTLVLAVGRQAILYNRSSNTFEQPTTTNREFCRYKFSW YLALDYVESLVSLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 109 | 107 | 6.8E-11 | – | |
| SUPERFAMILY | 8 | 80 | 73 | 1.57E-14 | ||
| ProSiteProfiles | 9 | 55 | 47 | 12.65 | ||
| Pfam | 14 | 55 | 42 | 7.6E-10 | ||
| SMART | 15 | 55 | 41 | 2.4E-10 | ||
| PANTHER | 20 | 354 | 335 | 2.0E-45 | – | |
| PANTHER | 20 | 354 | 335 | 2.0E-45 | – | |
| TIGRFAM | 118 | 354 | 237 | 1.0E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0035300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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