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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0035400 |
| Transcript ID | LotjaGi3g1v0035400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|A0A072U3C2|A0A072U3C2_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi3g1v0035400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3796296..3800010) extracted from Lotus japonicus Gifu genome v1.2.
ATCAACAAGTGAAAGCCACATAAACTTGAAAACCTTTTTGGATAGAAAGATATGTCATCGCCGCCGCCGCCGCCGCCGCG GCCGCAACTCCCCGACGACCTGATTGCGGAGGTCCTATCATGGCTTCCGGTGAAACATCTCATGCGACTCAGGTGCGTGT GCAAGTCCTGGAACACTCTCATCATCTCCGATCACACCTTCATCAAATTGCACCTTCACAGATCGGCACTGCACAAACCC CACCTCTTGTTAGAGTGGAATGACTCTATCTTCACCCGCAGTTTCTGCGTCACACACTTTTCCGGATCTCGTTTGGTTGA GAATCCATCGATCATCTCACTCCCCGATGTCACTCCGAAACGAGATGATATCTACACCGTCGTTGGTTCTTACAATGGGT TGGTGTGCTTGAACGGTTGTTGTGATTCTGCATACTCTGGGTTAGGACGAGAGGAATGGATCTGTTTCTGGAACCCGGCG ACGAGGTTAATGTCTGAAAAATTAGGGTCTTGTCGTGTTGATAACAATAGTTTTATAAAGTATAACTTTGGTTATGATCA TTCAACAAATTCTTACAAGGTTGTTAAGTTTGTTACCACCCATTTATCAAACAATGTGAGCATCAGGATTTACATCTTGG GTGATAATGTTTGGAGAGACATTCAAAATTTTCCCCTGCTTCCTTTACACTTAAATTGTATAGGTCTAAAGTTTTGGGTG CATTTGAGTGGCACTCTTAACTGGATCACATCTCGTAATGAATCCGCTAGTTGTTATAATCGAGAGACTATTACTGTTGA ACAACTTGCGATTCTTTCGCTTGGTCTTGGGACGGAGACGTGCACCCTCTTGTCACTGCCTAAGGGTTTTGATGAAGTGC CTTGTGTGCTGCCAAGTATTGGGGTTTTGATGGACTGTCTGTGCTTTTCTCATGACTTGAAGAAAACCCATTTTGTTATA TGGCAGATGAAGAAGTTTGGGGATGCAGAATCTTGGGTTCAATTACTCAAAATTAGTTATCAGGATCTTCAAAGGGAGCC CCTTGATGAAACCCCCTATACTCACTATCAATTAGTTCCATTGTACCTTTACAATGGTGATACGTTCATATTGGCCAGTT CTGGAGATGATGATGATGATGATCAAGCAATACTATATAGTAAGACAGCTAATACAGTACAGCGAACTGCACTTACAACT ACTACAACAGAAAAAATACTTTGGTTCCTTGCCTCCGAGTATGTTGAAAGCTTGGTTTCACCATTGAGAGTTGGATCTTC TACAACTGTTGCTTGACTAAATGTATGGTAAATCATGTTTTTTAAAATCCTTGTAATTTATAATAGATTGTTTAGTTATA CTATTTTTTGTTGGAGGATGAATTTGTTTTTATTTTGTGTTTTTTATAAGCTGGAAAATGAATGTTATTTTTCTGAGGTA GTTACCCTAAAAGATGATTCACCAATAAGGAAATTCATTCTGTCTTGAATATTCTTTACAGATGTTAATGCATGGAATAA ATTGATGATCATATTACCATGTTTGGAACTCAGTTATCTTTGTATACTATCAAGCGTAAAGATGACATTGCAAAATTTAT ATATATTGGATGTTCTTCTTGATCTGATTTTGTTTACCTGTTCAAGCACATCCAACTGATTTAGGTGGCAATAATTGGGG GTGTGTTTACTATTTCTGCACTTTATTATGATATTGGTATATAATCGATTTTTAGTAACACAGCCCTCGTGTCACCTAGG GTTCATGCTTTCTATTCATGGAATCCTAGTTGAAATCAATTTCTTTCTCTGTTTATAGAGAGGTTGGGTTGCATTTTGAG CATTATGCATTGATTTGTTAATTTTTTCTTTCATGTTTTGCTGTTTCATTCTCCACTCAAATTAATGTCTTTTTTAATGA TAGATCTTTATATGTAGTGTATTGTTGATTTTTTATGGTACATAGTGGGATGATAGGAAGAAAGTGAGAAAGGGGCTTAT TATTGTTGCAGTGCTTATTTGGTAGACATTCGTGGCTCTCTTGAGGTCTATCTTTTAGTTTCCTTCAGAAACATTTGTAG CAAGTTAGCAACATATTGTTTAATTAGTATTCTGTTATGCAACTCTACTTGTGTTTGTGTATTGCTATGTAAGCAACAAA ATCTCAACAGGCAACTTAAGTGCAGTTTTTGGTGGACCATTTGGGTACATTAGAAATATTGTTCTGGTTGCACAAGATTC ACTTGATAATCTATGGCTAGATCCTCCCTCCCTTCCTTTATTTTTTTACTTGTCATGAAGTGTTACATTTTACCTATCTG TAATTAGGGCACACCATGCACCTGCTTCATAATTAAGTTCAAATAATTCACGGGTGAATTACTTCTTTTAGTATTTTTTA CTGCCAAGTGCCATGCAACCACTCTACTGAATTGACTTAACTTTCATGACATGTTATTTTTCATAAACCAATTATCCTAA AAGTTTGAGTTGTTGAGTAAAGGACACATGAATTGTTTTATATTATATTTCTAACCTGTCCTTCACGCAAGAGCTCATTG GGCTTGAAACGTGGACAATGCACACGCGCACTTACCGTATGTCCTTTATATTTCTAACTTTTGTCGTTTCCAAAACTTCC AGTGTCGGGCTTCATTGATCTTTCATTTCGCTGCTGCCATTTTAGAGCCAGATGTCATACAATATGGGAACAATAATATC CCATTTGCAGCCATCAATTTCTGCCACATTTTGTATGAAAACAATTTCCCTCAGTGTTACCCATTTCACCTGAAGTGCAT TTGAGACCCTTGTGGTAATTGCCTTTGTAATAAGAAGCTCTGTGACCATGGTCTTGAATGCTGAAGTTGAAACTTAAAGC TTAAATTGAAAGCTGATATGCTTTCTAACTGAATAGGAAGTGTTTGGTAGCGGTATATCTTAAAAAATAAATCTCTTGAA GCTTATACTTTTCCTTTTTTCTATGTGTCTTGTTGTACTGCAGAGATGTTGATGTAGCAGAGAAGCTTGACTACTCATCT GCTGTGGTTCCTGTTGGATACTCCCTCATTTTATCCATCTTACGATCGTTCAATGTTAGGCTACCAGAGTTATGGTTTCT GCTCCATTGATTGCTTTTGTGATCACCCATGTCATGGACATCAATTTCTATAAACTAGATTACCGTATGTCCGGTCATGT AATCTTTATATTATTGCTGAGGCTGACTTGAATGTAAGATCCATGTTCTCTCTTCCAGAAAAAACTGCTTTGAGCTCTGT TAGTTTTCTATGCCATTCACTTCTGTAGTTTCTGCTTTCCATTGCAAGGTTATTGACAAGAATTTTATCATCTTTCTTTG AACCCATTCATGAGTATGCTTAAGTGGCAGCAGTAAGATCTGCTTTGTAGAAGTCTGTGGATTGGATTTGATTTGAAAAG ATACCGTCTTAGTTGTTACTTGTTAGAATTGCACAATTGATACAGTACATTAAGTAAGTGATTCAGATGATGTGATGAAT CACATTTGGTTTTGAATCATGTGATACATGTGTATGAGCCAGCGTGATTCCATAATTCAACAACGCTTGTTATTGTTCTT TGTTGTTATTTTGAAATAGAGGCTTTACACAATTATTCATTCACTCTATACTTCTACTGAGACAGTCATTTCATACAGTC ACTTTATGTGGCTCTCCTAAGGGAAAGAAGGGGAA
CDS sequence (LotjaGi3g1v0035400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCGCCGCCGCCGCCGCCGCCGCGGCCGCAACTCCCCGACGACCTGATTGCGGAGGTCCTATCATGGCTTCCGGT GAAACATCTCATGCGACTCAGGTGCGTGTGCAAGTCCTGGAACACTCTCATCATCTCCGATCACACCTTCATCAAATTGC ACCTTCACAGATCGGCACTGCACAAACCCCACCTCTTGTTAGAGTGGAATGACTCTATCTTCACCCGCAGTTTCTGCGTC ACACACTTTTCCGGATCTCGTTTGGTTGAGAATCCATCGATCATCTCACTCCCCGATGTCACTCCGAAACGAGATGATAT CTACACCGTCGTTGGTTCTTACAATGGGTTGGTGTGCTTGAACGGTTGTTGTGATTCTGCATACTCTGGGTTAGGACGAG AGGAATGGATCTGTTTCTGGAACCCGGCGACGAGGTTAATGTCTGAAAAATTAGGGTCTTGTCGTGTTGATAACAATAGT TTTATAAAGTATAACTTTGGTTATGATCATTCAACAAATTCTTACAAGGTTGTTAAGTTTGTTACCACCCATTTATCAAA CAATGTGAGCATCAGGATTTACATCTTGGGTGATAATGTTTGGAGAGACATTCAAAATTTTCCCCTGCTTCCTTTACACT TAAATTGTATAGGTCTAAAGTTTTGGGTGCATTTGAGTGGCACTCTTAACTGGATCACATCTCGTAATGAATCCGCTAGT TGTTATAATCGAGAGACTATTACTGTTGAACAACTTGCGATTCTTTCGCTTGGTCTTGGGACGGAGACGTGCACCCTCTT GTCACTGCCTAAGGGTTTTGATGAAGTGCCTTGTGTGCTGCCAAGTATTGGGGTTTTGATGGACTGTCTGTGCTTTTCTC ATGACTTGAAGAAAACCCATTTTGTTATATGGCAGATGAAGAAGTTTGGGGATGCAGAATCTTGGGTTCAATTACTCAAA ATTAGTTATCAGGATCTTCAAAGGGAGCCCCTTGATGAAACCCCCTATACTCACTATCAATTAGTTCCATTGTACCTTTA CAATGGTGATACGTTCATATTGGCCAGTTCTGGAGATGATGATGATGATGATCAAGCAATACTATATAGTAAGACAGCTA ATACAGTACAGCGAACTGCACTTACAACTACTACAACAGAAAAAATACTTTGGTTCCTTGCCTCCGAGTATGTTGAAAGC TTGGTTTCACCATTGAGAGTTGGATCTTCTACAACTGTTGCTTGA
Protein sequence (LotjaGi3g1v0035400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSPPPPPPRPQLPDDLIAEVLSWLPVKHLMRLRCVCKSWNTLIISDHTFIKLHLHRSALHKPHLLLEWNDSIFTRSFCV THFSGSRLVENPSIISLPDVTPKRDDIYTVVGSYNGLVCLNGCCDSAYSGLGREEWICFWNPATRLMSEKLGSCRVDNNS FIKYNFGYDHSTNSYKVVKFVTTHLSNNVSIRIYILGDNVWRDIQNFPLLPLHLNCIGLKFWVHLSGTLNWITSRNESAS CYNRETITVEQLAILSLGLGTETCTLLSLPKGFDEVPCVLPSIGVLMDCLCFSHDLKKTHFVIWQMKKFGDAESWVQLLK ISYQDLQREPLDETPYTHYQLVPLYLYNGDTFILASSGDDDDDDQAILYSKTANTVQRTALTTTTTEKILWFLASEYVES LVSPLRVGSSTTVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 3 | 78 | 76 | 7.33E-15 | ||
| ProSiteProfiles | 7 | 53 | 47 | 12.465 | ||
| Gene3D | 11 | 167 | 157 | 1.3E-9 | ||
| Pfam | 12 | 47 | 36 | 5.5E-10 | ||
| SMART | 13 | 53 | 41 | 8.7E-10 | ||
| PANTHER | 14 | 342 | 329 | 5.3E-47 | – | |
| PANTHER | 14 | 342 | 329 | 5.3E-47 | – | |
| TIGRFAM | 129 | 325 | 197 | 6.5E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0035400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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