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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0035500 |
| Transcript ID | LotjaGi3g1v0035500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Post-GPI attachment to proteins factor 3; TAIR: AT1G16560.1 Per1-like family protein; Swiss-Prot: sp|Q0VFE3|PGAP3_XENTR Post-GPI attachment to proteins factor 3; TrEMBL-Plants: tr|A0A151SVC9|A0A151SVC9_CAJCA Post-GPI attachment to proteins factor 3; Found in the gene: LotjaGi3g1v0035500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3804964..3812333) extracted from Lotus japonicus Gifu genome v1.2.
TTTACAAGTTAGAATTAATAAGGGCATCATTGGAAAAAAATAATTAATATAGCTCAAACTTTCATTTGGTTCTTATAAAA AGGACCAAGATTTTTCTTCTCTTTCATGCTTATAAATAGGACCGGAGGGAGTACATAATATATGTATATACATATATGAG AGAGAGGAGATTTGTGTTAGAGACTGGCTAATCAATAATGTTGTGGATTTTGAACCTACTTATTTGACATCTATGAATTA TTATTTTAAGTCAAATGAATTGATAAGAATCACATGAGATGCTTCAACCCATTGCAAAAAATCCAATTGCATAATCAACA TAAATTTAATTAAAAATTTGAAAAGTCTAATCTAACATATTTTCACCCCTAATGGTCATGCTCACACCACATATGGTTGA TAAGGGTTTGATGATTGCCTTCGTAGAGAGGTTGCATAGGAAGACGCAATCCTTCCACCTTCCATTTGAGGAGATGACAC TCACCTTAGATGATGTGTCATCTCAGCTCACCTTAGATGATGTGTCATCTCAGCTGCATATCTCTATTATTGTGGTGGTT TTCACACTTCCAATGCAACCAAGTGTCAATTTGTTTGATGTCTCTATTGTTGAGCCTTTCCTAGAGATGAACCAAACTAA GGGATGCATGTCTAATACACATTTACGAGAATAATACACATCAGCGATTGTAGCTAGGAGATTTGAAGTTGCAGTCATAG TCTTTCTTCTCCACCTTTTGGGCTACACCATTTTTAATTTGTTGACAAGAGGCGGCAGTCGTACATAGACGTCGCCTTTC ACTATTCGAGGATTTGGAGAGTGTTGGGACATAGGCATGGGGCACAATTGCCCTTGCACTTTTTCTTGACTAGCTTGGTG ATGACTGCTTGAAGGGTACTGAGCATATGACGGGTTACATGACTCTATTGCAGGTTTGATTCTCATTTGAAATTCACTAC TTAATTGCTATAATAATACCTTTTTGTCTTATACATGTGCGTGTTCATATTACAGGACTGGATCTATAAGCATATCCCAC AATTCACTTCTACAGAGGTGTTAACCTAACCCAAAGTACACAAAGGAGAAGCCTAGGTCGGTTTGGTGGATTTTCTTTTC GAGTGTTGGATTGGTATATAGAAGGCGACTTGATCTAGATGACATGGCTCCGACCACCATCACTTGGAAAACTATATGCT GATCGTAGAGCCCATCATCCATTCCAGAACATCGCTCAATACTCAAGGTACGACCTAATGATGCTCAGATAGTTTGGGCA CTTGCAAGGAATACCTCATGCGCCTCAGGTTATTAAAGGCACATGGCCACTTACAGCTAATGAGACAAATGAGAGTTAGG CCACATTCATCCTCTAAATAATTGACTGAAGGGTTCAAGCTGCGATTATGGGAGAGTTCATATTTGAGAGCCTTGAATGG TTTCTCCGAATCTCACATCTCCTTCTAATACCTTCGAGTCATAGAGAGCTTGATAATGTTTCGGTGGGGGTTAGTGTATT TTTGTACAACTTACTTTCAACTATCATGCTTTCATCCACCATCCTTCCATTCTTGTCTGATATGAAATTATGTTTTATTT ATGCTAGGAACCTACGAATCCAAGAGTGGCTCACCACGGTGCTAGAAGATGAACGTTGAGGACAACTTTTGCGAAAGTAA AAACTTATGTTCACACTTCAATCCTAGTTCCACCAAGAGATAAAAGAAGAAATAAGAGATATACTAGGCCATGTGATAGA AGAAAAAAAAAAAGAGATGAGAACAAAATGCGAGTGAAAATCAAATGAAAGAGAAATAAGAATACGAATAAATCAAAAGT CTTTGAGAATTGAATTTAATGTCATCACCTTGTCATCCATTTATGCACTTTAATTTTGTGTACCGCACTTATAAGTGAGT GAGGTAAAATTGGGTGGCGAGAAAACCACTAGGGGTGACACTAAAATTAATTCCCAAAGCCTTTATGAAATGAGTTATAA TATGTTCATATCTCATTTTATCATCATCTATCTCATTTTCACCTCATCTATCTTCTTTTTCAATCATATTAAATCCACCA TTTTCTCAATTTTCTTTCTTTTCTTCTTGTCTCTCGCAAATATCTAAGTGGAACACGTGAACAAAACACTTTTGTTAGGG AATTACAACTTGACGACTCTCGATTCGGAAAGAAAAAGAAAAGAAGAGAAAACTTGACATCTTGCACCATTACCTTGTCG AGCTCGAACTATTAGGCACAACAAAAGGTAAAAAAAAAAATCGATTTTTTCCCCTCCTCCCAACCTCTAAATGGAGTAGA ATCAACTGCAATTATCACTTGTATCTGCAAATTTTCTGCATATGGAATAATGGGTTTGCTTGATATATATATGAATTGAA AACCTTTTCTTTTTCTAGCTTCCGATCTATCACAACGGTAAAGATTCAATTTTTACGAGTTTTGAGATTTGGGTTTTCTT TTTTCTTTCTCATTACTATTCTTAGATACCCAAAATCCACTTTGGTAATCATGTTTTGATCATATTGCTGAAGATTTCAT TTATCTACATCTTAGATTGGTGAAAAATTTTGTTATTCTTTTTTTAGCAATCACTTGTTATTAACTTGTAATGGAAATTG TTTGAGCTTTTTGGCTTGATGATGTTCCTGTACCATTGGTAGGATTTGCATATTTTTGCTGATGTTGATGTGACTTTTGT GTGTTAAATGTAATGAAATCAGATGATAGGTGGCTATGTATTTGCTTTCCTTTTGGTGCTTTCATGGTCTGTGGAGGTGA TAGATGCAAGTGCTGGTGATGTTGATCCGCGTTATAGGTACTTAGCTACAATCTTTCCCTTTATTATTTCCTTTTGGAAG TTGTTCATCCTAATCTTATTATTATTATTATCTTGCTTATAGTTAGGGTTGGTTTGGTAAACAGAAATGCACATCGAGGT ATTTAGAGATAATATGTAATTTGATAAAGTGTTGCTTTGATCTGGCATTTAATATTACACCTCTAGTTAATGTGCCGCAT CCGCCATTCTGTGGCTGTTACACCTTATATTAGAAGAATTTGTGAACACCTAAACATAGATTTGAGAACTTGACATAATG AGGGACTACTTTGTGTAATAGATACTTCCAGGGAACAAGGCAACAGTACACAGGTTGCCACTTTCGAAGGACCAAGTTAT ATATTCAGGTTTTTATGTTTTGACTTGGATATTTCGGTCTTTAGCTTATGGCCTTTGCTGAATTCATGACCGGTTAAAGC TGAATACTGTAAAGGGAACTAAGATGCATTCCATGCTGGTTGCATAGATGTAGATTTGCTTTAGTTTCTTTAGGTTGTAT ATTGTCATGTTTAAACTTTTCTAAGTTTTTTGAGCTTTTATGTTTTTTAGCGCTGGCTGCTGATTGCTTGTAGCTACCCG AATACTTTAAATATTTGATATTAAAAGGTTAAATGGTCTATAACAACATGAACAGTAACAACCAGACCTTGTTTCTAGGT GGGGTGGGGTTGACCACATGGTTCAGTTCATGCCATTTGGTTCTATCAAAATCTAATATTTTGATGCAACCATTTTTTAA TTTCCCTTATTATAGCATCGAGGAAATCATCATTGCATTCAAATTCTATAAGTTACGACACCCTTTATGATTTAAGTTCC TTATTTTTGTTGGATTTCTCTGAACTCTATTTTCACTTCTTGTTTTGTTATGGATATCAGGGATTGTATAAGACAATGTC AGGAAACTGGATGTGTTGCACAAAGTTGCTTTCCACACTGTAAATTTCCATCAGATGGAGAACATTTTGATCGTCCATGG TACATGCAAGAACCACTCTATTTGCAATGGAAAAAATGGGATTGTCAAAATGACTGCCGATACCACTGTATGCTTGATAG AGAGAAAGAAAGAAAGTTACTTAACCTTGTTCCTGTCAAGTATCATGGTAAATGGCCATTCGCGCGTATTTATGGGATGC AGGTTTGTTAATGAAGAAGCTGTGCACCTTATGTTTTCATTGTCCTTAAAAACCTCTTGTTTTAAGAACTTGCCTGTATA TCCTTTTATGTAGGAGGCTGCTTCCGTGGCTTTCTCAGCTCTCAATCTTGCAATGCATTTTCATGGTTGGGTCTCCTTTT TCATTCTTTTGTACTATAAATTACCTCTAAAAGATGGAAAGGAGGCATATTATGAGTATGCTGGTTTGTGGCATATATAT GGGCTCCTATCACTCAACTCCTGGTTCTGGAGCGCTGTTTTCCATAGTAGGTAAGTTACATATGCAGATATTTTCAGCAT TTTGTACTGATTCTAAATATCTTAGTGTTGTTAGTGAAGTCATTTTGACTTTGATATTTCTAAGAATGAATACCTTGCTA TATGAGTTTTGACCTTAAAGAATGATTTGATTTTAGGTAGTGTCACTGTCAATCAAGCTGTCTTTGGTTGCTTGTTATTG AAGTGATACTTCTTAGTTCTTAAATTGAATCACAATGATGTGACTTAAATTGAATCACAATGTATACATATGAGATAATA ATTAGGAAGCTGTTTTTTTAGGGTTTGTTTGATTACTATTTTGTAAAAAAGTTTAGTTTTTGAAAAGTGAAAAAACATAA CTTGTTTGATATAAATTGTTTTCGAAAACAGTTCTTAAAATCCATTCTTATTTTCAGTTTTCCAAACTCAAAACTCAAAA TATCTCAGATGTTTTCTATTGTTGTTTTCAGTTTTCAAATCAAAGGTCTTTCAACTTTATAAAATATCTCATTCAAACTG TTCTATTCTTCTCTTCTTCTGAAAAACTGGTTTTAAAAATTGTTTCTGAATAGTGAAAATAGTTTTTAAATTCAGAAAAC TGAAAAGAGAACAAACAAGCCCTTAGTAGACATTTCTAATACTCCCCCTTTCTAAGACTCTTCAAAATTTATGAATTGCT GTTTTTTTTTGAAAATTAATAACCTTACTTAAAAATAATATTTAGTAATCCAAAATATATATAATTGGTTTAGTTAAAGC TAATGATGATAGTGTTCTGAATTATTCTTGTCCTCTATTGTTTTCATGAAATTGACTCACTCTAGTTTTAATGTCACACC TGAACTGTGTAAAGAAAAGAAACATGTTTCATTAGCTGCTGAGTATAGCAATATATATAAGTCTCTTAAAAGTTTCGTGT ACATCCTAATTTTTTTCTATATGTTCTGTTGTACTGCAGAGATGTGGATCTAACAGAGACACTAGACTACTCTTCTGCTG TGATTCTTCTTGGATACTCCCTCATTTTAGCCATCTTACGATCCTTCAATGTTAGGGATGAGGCTACCAGAGTTATGGTT TCTGCTCCATTGATTGCTTTTGTGATCACCCATGTTATGTACATCAACTTCTATAAACTAGATTATGGTATGTCCTGTCT TGTTGCCTTTATATTACTGCTGAGACCAAGAGCTGAATGTAGGATCCATGTCTTCTTTATTTCTCTTTTTATGAAAAACT TACTTTGAGCCATCTGTTAATTATCTATGTCATTCACTTCTGTAGTTTCTTCTTTTCATTGCAAGATGAGGAGGTCTAGC AAAAGACTTTCTAAAACACACTCTCCAACACACTTCATGTTATTGGTTTATTTTTTAAAAAGTGAACATATTTGCCTCAC TCTTTAAAACGTTTTCATTTTTGAAAAACACAAAACAATCACATGTAGTGTGTTTAAAAAATAGTTGATAGCATTCCTCT AGCAAAATTATCGACAAGATTTTTATCATTTTTCTTTCAACCCACTCTTTGTGCTTGCTGCAATAAGATCTGCTTTGGAG AAGTCTGTAGATTGGATTTGATTTGAGTAGCTACCGTCATAGTTTTTAGACATTAAGTAACTTACTCATATCATGTGATG TATCACATATGATTTTAATTATGCAATGCATGTATGAACAATGTGATTTAGTATCACCATCACGAACACATGATTCAACA ATTCTTCTTCTTCTTGTTGTTGTTAGTTTGAAACAGAAGCTTTACACAATTATTCATTCACTCTATAGTCTATACTTTTT CTGACTTCTGAGACAAAGACTTCATACGGCCCCTTTATGTGGCTCGTAAGGAAAAGAAGAAGGGGAAGGAAAGATGTTAC CTGCAGAACATTGCACTGTTTTGTATATCATTCAATGTCCGCATTATACATGGAAAGAACTACCATTTAGAAGGAGCACA CTATGAAACACGCGTTCACTTCATTGCTTGTGTGTTGTGGGTTTTTCATTTCAGCTTTTATATATGTTGATAGATGACTC AATTATGGCATGATTATAATTTTGTTTGTGATACTTATGATTAAGCTGTTTTGTCAATTCCTGGTTTAAAATTATGACAT TAAACACTATGAATCATTTATATGATATATTTCGAAGTTATTTTTAATTGTCTCTGAATTTTACAATTTGATACAATTTA CTGCTCATGATTTAAAAAGTTAGAAAGATAGTTTACAATTTTCATAGGAATTTGATACCTTAGCTTCTCTTTAGCAAAAT TGAAGTTATGGTTTATGTGCTCCTAATGTGAGACCTTTATGTGCACTTGAGAGAGAGAAGTTTTATGTTTAGCTATCATC ACTATGTCTGATTAACCCCTTTTCATTTTTCTCCTTTTGTGACTATTTTGATGGCGTTCTCAATTGAACTGTGCAGGATG GAATATGATAGTTTGTGTAGTGATGGCTGTGGTGCAACTTGTCATTTGGGCAGTTTGGGCTGGTCTTAGTGGCCATCCTT CACGATGGAAGCTATGGCTGGTTGTTATTGCTGGTGGCCTTGCAATGCTTCTAGAAATATATGATTTCCCTCCATATGAA GGACTTTTGGATGCACATGCTCTTTGGCATGCCACCACTATTCCTCTAACTTACATTTGGTGGAGTTTCATTAGGGATGA TGCTGAGTTTCGAACCTCCATTCGGGTTAAGAAGGCCAAGTAATTTCCTTTTCTACTTACTTGATAGGGACACACTTGGA TGATCGCTTTCACACACAACTTAGCTCTCTTTGATAGTCTACTTTTGCCAATGTTTATTTCTATGTAATCATTTTAGATT TTGATGCTGAGTTTTGTATTTATATTTTGGGGGAATCATGAACTAGACATTCTCTTCAATAGGCCAACAGATCGTTTCAA GAATCTCATTCATGTTTTCCCTTTTCTTTACGCCAATTTGTACAAAATCTTACTTTTATGGCCCTAATGATTTCACTATT ATTTCAAATTCAAGGTGTTACTTCCCTTGCATAATTGTAGTTTTGACACTTGAGTCTGAAAAACCAATCTAGTAACCAAA TTTAGTTGGG
CDS sequence (LotjaGi3g1v0035500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAGGTGGCTATGTATTTGCTTTCCTTTTGGTGCTTTCATGGTCTGTGGAGGTGATAGATGCAAGTGCTGGTGATGT TGATCCGCGTTATAGGGATTGTATAAGACAATGTCAGGAAACTGGATGTGTTGCACAAAGTTGCTTTCCACACTGTAAAT TTCCATCAGATGGAGAACATTTTGATCGTCCATGGTACATGCAAGAACCACTCTATTTGCAATGGAAAAAATGGGATTGT CAAAATGACTGCCGATACCACTGTATGCTTGATAGAGAGAAAGAAAGAAAGTTACTTAACCTTGTTCCTGTCAAGTATCA TGGTAAATGGCCATTCGCGCGTATTTATGGGATGCAGGAGGCTGCTTCCGTGGCTTTCTCAGCTCTCAATCTTGCAATGC ATTTTCATGGTTGGGTCTCCTTTTTCATTCTTTTGTACTATAAATTACCTCTAAAAGATGGAAAGGAGGCATATTATGAG TATGCTGGTTTGTGGCATATATATGGGCTCCTATCACTCAACTCCTGGTTCTGGAGCGCTGTTTTCCATAGTAGAGATGT GGATCTAACAGAGACACTAGACTACTCTTCTGCTGTGATTCTTCTTGGATACTCCCTCATTTTAGCCATCTTACGATCCT TCAATGTTAGGGATGAGGCTACCAGAGTTATGGTTTCTGCTCCATTGATTGCTTTTGTGATCACCCATGTTATGTACATC AACTTCTATAAACTAGATTATGGATGGAATATGATAGTTTGTGTAGTGATGGCTGTGGTGCAACTTGTCATTTGGGCAGT TTGGGCTGGTCTTAGTGGCCATCCTTCACGATGGAAGCTATGGCTGGTTGTTATTGCTGGTGGCCTTGCAATGCTTCTAG AAATATATGATTTCCCTCCATATGAAGGACTTTTGGATGCACATGCTCTTTGGCATGCCACCACTATTCCTCTAACTTAC ATTTGGTGGAGTTTCATTAGGGATGATGCTGAGTTTCGAACCTCCATTCGGGTTAAGAAGGCCAAGTAA
Protein sequence (LotjaGi3g1v0035500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGGYVFAFLLVLSWSVEVIDASAGDVDPRYRDCIRQCQETGCVAQSCFPHCKFPSDGEHFDRPWYMQEPLYLQWKKWDC QNDCRYHCMLDREKERKLLNLVPVKYHGKWPFARIYGMQEAASVAFSALNLAMHFHGWVSFFILLYYKLPLKDGKEAYYE YAGLWHIYGLLSLNSWFWSAVFHSRDVDLTETLDYSSAVILLGYSLILAILRSFNVRDEATRVMVSAPLIAFVITHVMYI NFYKLDYGWNMIVCVVMAVVQLVIWAVWAGLSGHPSRWKLWLVVIAGGLAMLLEIYDFPPYEGLLDAHALWHATTIPLTY IWWSFIRDDAEFRTSIRVKKAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 6 | 342 | 337 | 1.9E-178 | ||
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 6 | 342 | 337 | 1.9E-178 | – | |
| Phobius | 18 | 24 | 7 | - | – | |
| Phobius | 25 | 123 | 99 | - | – | |
| Pfam | 70 | 330 | 261 | 4.9E-87 | ||
| TMHMM | 124 | 146 | 23 | - | – | |
| Phobius | 124 | 147 | 24 | - | – | |
| Phobius | 148 | 158 | 11 | - | – | |
| TMHMM | 158 | 180 | 23 | - | – | |
| Phobius | 159 | 181 | 23 | - | – | |
| Phobius | 182 | 192 | 11 | - | – | |
| Phobius | 193 | 211 | 19 | - | – | |
| TMHMM | 195 | 216 | 22 | - | – | |
| Phobius | 212 | 222 | 11 | - | – | |
| TMHMM | 223 | 242 | 20 | - | – | |
| Phobius | 223 | 242 | 20 | - | – | |
| Phobius | 243 | 247 | 5 | - | – | |
| TMHMM | 247 | 269 | 23 | - | – | |
| Phobius | 248 | 271 | 24 | - | – | |
| Phobius | 272 | 277 | 6 | - | – | |
| Phobius | 278 | 296 | 19 | - | – | |
| TMHMM | 281 | 298 | 18 | - | – | |
| Phobius | 297 | 307 | 11 | - | – | |
| TMHMM | 308 | 326 | 19 | - | – | |
| Phobius | 308 | 326 | 19 | - | – | |
| Phobius | 327 | 342 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | GPI anchor biosynthetic process | The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage. |
Expression pattern of LotjaGi3g1v0035500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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