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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0038700 |
| Transcript ID | LotjaGi3g1v0038700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Light-regulated protein; TAIR: AT3G26740.1 CCR-like protein; Swiss-Prot: sp|Q03200|LIRP1_ORYSJ Light-regulated protein; TrEMBL-Plants: tr|A9PJH2|A9PJH2_9ROSI Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0038700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4171830..4178677) extracted from Lotus japonicus Gifu genome v1.2.
ATCTTCTGCCACCTCATCTTATCCCTTACAGATAAAGTGTGCGAAAATTTGACAATTCATCCATCTTTCTATCAAAGAGC TTCATTGTAAGAAAGAGTCAGTGATCACAAAATGCAGGCTGCTTCCTACATTACACCACAATCAAGAATCCCTTCTATGA CTTTTTCACCAACCGTATCCAGTTTTGCCTCTCTAAGGAACCATTATCATGTTCTATGTGTCCCAAAATTGGCTATAGTG AAGACTCCCAATTGTCTTCCCCTTAAAGGAGCAGCAACAAATGACACCTCAACAGTTGATTACAACTCCATCACCTCGTA AGCTACAATATGATTTCTTACACTATGATTTCTGATGTATTTTTAGTATCTAAACATTAATTAGTATAGTAATCGTGTTA GGACTAACTCTACCCATGTACCCAAAAGCTGAGTTTAGATGTGAGGATTGCAATACTTATATGAATTATCTAGCAAATTT CACTCTTTAGATGTCCAGCTATGAGCGTGAGGGGTCATGTTAAGGTCCCACAAGCACTAGACATATGATCAGTGATTGGG GATTCTAATCTCAATTCTAATGAATGGAAAAAACTTAATGGTCAGCCTCCTGCCGCTTAATGTGCCGACCGTGACTCGAG AGATTGATTTCACGACTAGTGGCGGTGGGATTATCGTGGTCAAGACCAATAAAATAAAGAATTATGTCTAACCCAACTTC TAATATTAATTAACAAGATTTTTTTTGGCAGTGTTTTTCCAGCTGAGGCCTGTGAGGTAACGGGAGGAGATGCATGTAAT GTTGAAATGTACCCTGAAGCGAAGCTTAAACCTGAAGGCAGGGACATCAAGGCCACAACTAGGGAGCTTGTGGATAGAGA GTACCTTGATTACAATGATCCCAAAACGTAATTTACCATATTCCCCTGTGGTTTAAGCATGACATAAAACTGTGAGCTAA ATCCATATTCTTTCTTTTTGTGTGTGTGTGAATTGCAGGGTGTTCATAGAAGAGGCTTGTGATGATCTTGGAGGAGAGTT TTGTGAACCTCAATACAAGTCAGGATTGTAAGTGGAACCCCCCAACTAGGAGGAGTTGAAGTAGAAGAAGTTGAAGACGA GGATTATAAATCTGTGTTTTCGTTAACTACCTAAGAAGTCATTAGTTTTTGTTTCTTCACCTTACATTAATAAACTCAAT ATTATGGTAGCAGAAGCCCATCAACAACTAGGCCCAAGCGTGACATTAAATGGCCCTCCAAATATAAAGACTATATTTAA AGCTGATCCAAAAAGAGAGAGAATTTTTATTGTTTTTTATTAATGAATGAAATCAAAGCTCCAATTGTTTAGGAGCCTAT CGTATGGGCCTGAGGCCAACAGTATTAAATAGGTTGTAATTGCAAGAAAGAGGGGGAGAAAAATTGGCAGTTGCCTAAAT TTTGTTTGTTTTCCCTTTATTTTCTTATTTTCCTTATTTCTAGCTCTGCTAGGGTTTGCTTGATAGGTTTCTTCCTATCA ATTGGTGCCTTCATTGATGACTTCTTCTCCTGCTCAAGATTTGACTCTCTTGGAGGCCATTGAGGACAAACTCTCCTCTG TCCTTCAACGTCAGGATTTCCAAGAAGCAAAAACTGATGCCTTTTCTGCCATCTTACAACACCTCTCACAGCACCTCATC TCCCTCTCTACCTCATCCACCAACCAGATCCCACCTCAACCCCCTCCTGTGGGTACCTTGGGTGCTCAACAAACTGTTCC TCCTGGGTTTCCAGCTTTTCCCTCGGGTTTCGCAGGACTCTCTGGAATCTCTACTGTTGCATCGCCCTCCATGGGTGTTA CCGGCAACACTGCTGCTTCTTTTATCCCTTCATCAAGTATTCCCTTAGCCTCCTCTTCAAACACATTCACAAAAACTCCC AAGCTACAACTTACAGCCTTTGATGGAGGAAACCCACTGGACTGGATCTTCAAGGCGGAGCAGTTCTTCAACTTCCATCA AACACCTCCTGCTCAACGCCTGGAAATGATAGCTTTCTACATGTCCGGCGACGCCCTCAGTTGGTTCAAATGGATGTTTA CGAACCAACAACTCACCACCTGGCCTGAGTTCACCCGAGCACTCACAATGCGATTTGGTCCTTCCTGTTATGAAAACCCA CAGCAAGAATTATTCAAGTTAAAGCAAATCACAACAGTCCAGGAATACCAATCAAGGTTTGAACGTTTATGCAATCAGGT CATTGGTTTATCTGCTGAAACAATTTTAAATTGTTTTATTTCTGGTTTAAGTCCTGCTATTAAGAGTGAACTAGCTATCT TGTGACCCTACTCAGTTTCTAATGCTATCGGTTTGGCCAAGTTAGTAGAAGCCAAGCTTAAAGACACCCTCACAACTCCT AAACCCTCTCCTTACAAATTTCCACGACCTGCAAACTCTTTTGCATCCCCACTTACCCCAAAACCGCCAACACTCACCAC CCCAACAGCTCAGCCAGCCCAAACACCAACAAACCAACCCAAACCATCATCCCAATACTCACTCAAACGCCTAACCCCAA CCCAAATGCAGGAGCGCAGAGCACTTGGCTTATGTTACAATTGTGATGAGAAATATGTTCTCGGCCACCGATGCCAAACA AAGCCATTTTTATTGTTACTAATAGATGAAGAGGTTGATAATGCAATACCAGATACTCAGCCAGATACACACTTACTTGA GGAGGTGGAAGTTCAAGTTCAAGAGGAGGAGCCCTTACATTTTCAGCTTTCTGATTGTGTGGTGCATGGTGTACCTTCTC CAAAAGCCCTGAAATTCAATGGCACTGTGTTAGGACACAACGTGCGTGTGCTGGTTGATACAGGCAGCACTCACAACGTG ATCCCCCCTCGTATTGCAGCGTTCTTACGCTTGCCGGTTCAGCCCATACCCAGTTTCTCAATCATGGTAGGCAATGGGGC TTACCTCACTTGTTCTGGCTTGGTTTCTGACATCCCATTAATGATTAAGGGACACATTTTTCGGGTGCCCTTTCATATCA TGGAGATCCAAGGAGCTGACCTTGTGTTGGGATTGGAGTGGTTGAGGACTTTGGGACCAACCACATCAGATTATGCAGTG CCCTATATGACCTTCCAGGTTGATGGCGCGCCATTCACCTTAACCGGGGAACCCTTCCAACCCCCTACAGCTGCATCTTT TAATCAATTGCAGCGCATGTTACAATCTGATGTAGTGGCTGAATGTTTGACTGTGGCTTTCACACCAACATCTACTGATG ACACAGCACAATTCCTTCAGCTCACCAACTTCACAGAGGCAAACCAAGATATGGATCCAACATTGTGGGACTTGCTTAAG GAATTTGAGTCTGTTTTCTCTACACCACAAGGACTACCTCCACCAAGGGAGCATGACCACCACATCACCTTGCTCCCTAA TTCCTCACCGGTGAATGTGCGCCCATATCGGTACCCCCACACACAAAAGGAAGCCATGGCTGCCTTGTTGTCCGATATGC TGAAGGAAGGGATTGTCAAGCCTAGCACGAGCTCTTTCTCATCTCCCGTGCTACTAATCAAGAAGAAGGATGGATCTTGG CGGTTTTGCGTGGACTACCGCAGCCTTAACTCCATCACCATAAAAGATAAGTTCCCAATCCCTACAATAGATGAATTGCT TGATGAGTTAGGAGGTTCAACAATATACACTAAGATTGATTTAAGATCTGGCTTTCACCAGATTAGAGTTGTACCTGAGG ACACTCATAAAACAGCGTTCCGGACGGTTGATGGTCACTACGAGTTCTTGGTTATGCCATTTGGGCTCACAAATGCCCCG TCAACGTTCCAACATGCAATGAATGATCTCCTCCGCCCTTTTCTGCGGCGTTTTGTATTGGTATTTTTTGACGACATCTT GATCTATAGTGCCACCTTCGCTGCTCATTTGGAACACCTCAGAACAGTGTTAAGAACTTTGTTGGCTAACAAATTTTATG CCAAACTCTCAAAATGTGACTTTGGTGTAAACACTGTGCATTATTTGGGGCATGTGATATCAGCTTCTGGAGTAGGTCCA GATCCCAACAAAATTCAAGCCATTCTAGACTGGCCAACACCAAAATCGGTCACAGCACTTCGGGGCTTTCTAGGGCTCAC CGGATTCTATCGGCGCTTCGTGCGACACTATGCCACACATGCTGCACCGCTCACTGACTTGCTCAAACAAGGGGTGTTTT CTTGGCCACCGGAGGCAGATATGGCATTTCAAACAATGAAATCCTTGGTCACACAAACGCCGGTTCTGGGCCTTCCTGAT TTCACTCAACCATTTGTGGTGGAAACTAACGCTTCAGGTATAGGAATTGGGGCAGTGCTCTCACAGCAAGGGCATCCTTT GGCATTTTTCAGCAAGAAATTAGGCCTGCAAATGCAACAACAATCCACCTATGTGAGGGAAATGTATGCCATTACTGAGG CTATTAAGAAATGGCGACAATATCTCATTAGTACTAAGTTCAAGGTATACACCGATCAACAAAGCCTCAAACACTTGCTA ACTCAGTCCATCCAAACACCAGAACAACAAAAATGGGCATCCAAGTTGATAGGTTTTGAATTTGACATTATGTACAAACC TGGGTCATCAAACAAAGTGGCTGATGCTCTTTCCAGGTGTCATTCTCCATAAGAACCCTTGCTGCTGGCCCTATCTTCAG CTGTACCACAGATTCTAGAAACCCTTCACAAATTCTACACCACCGAGGAAGGGAAGAAAGAAATATCTCAGAGTTTGTCT CAGACAGGGTTTCATATGCATCAGGGATTATTATATTACAAGCAAGCCTTATATGTACCAGATTTGCCTGAGCTATGAAC CAATCTGTTGCAGGAATATCACGCCACTCCTTTAGCAGGCCATTCCGGTCTACAACCGACCCTTGCACGGTTAGCAGCAT CATTCAGTTGGCCTGGAATGTATACCACAACAAAAGAATACATCAAAGAATGCAAGGAGTGTCAATATAACAAATATCAG CCAAAGAAAAAGCAGGGTTTGTTACAACCTTTGCCATGCCCTGACAAGGCCTGGGAGGATGTTAGCATGGATTTTATAAC TGGTCTGCCATCTTCTTCTGGTTATTCTTTCATTTGGGTGATAGTGGATAGGCTAACAAAGTATGCTCACTTTGTGGGAT TACCAACCAAGTTCACAGCACAAGCCTTAGCTAACAGGTTCTCCACAGAAATTTGCCGGCTCCACGGCATACCACGATCC ATTGTGTCTGATCGGGACAAGGTTTTCATTAGCAAATTCTGGAGAGAATTGTTCCGGGTCCATGGCACACGTTTGCGGTT TAGCACTTCCTATCATCCAGAGACGGATGGGCAAACAGAGGTAGTCAATCGAGGCCTTGAAACATACTTAAGGTGTTTTG CCGGAGAACAACCAAAATCCTGGTAGTATCTTCATCTTGCAAAACTCTGGTACAATACCGCATATCATTCCTCAGCTGGG ATGTCACCCTTCAAAGCCTTGTATGGTCGATCACCGCCAACCATGCTCGATTATGTTGCTGGTAGCACCTATCTGGAGCC TTTGAACTCTACCCTGCAACAACGAAATATAATCATGAGCATTTTGAAGGCCAATCTGCATAGAGCACAGCAGAGGATGA AGGCAGAGAAGGATAAACACCGTTTGGACACTACCTTTGAGCTCGGGGATTGGGTCCTCCTCCGCCTGCGGCCATATAGA CAGCAATCGTTGTACCAACGACAGTCACAGAAGCTCTCACGCAAGTTCTTTGGCCCCTTTTGCGTCATACACCGGATCGG CGCCGTAGCATACGAGCTGGAACTGCCACCCTCGAGCCGCTTACACCCGGTTTTCCATGTTTCTCTTCTGCGGAAGTTTC ATGGAGACCCACGTACAGCGTTTGTTCCTCTCCCTGAGCTTGCCACCGATCTTCTGGAAGAGACACCAGCCGCGGCCATA GCTCCGGCCGCCGTCCCTCAGGCCACCGCTGCAGCCCGCAACCCGCCGGCACCGGACCCTCCACCACCGAGCAAAGACGT TCCAACAAAGGAGGTAGCAAAAAAAAAAAAAAAGAGGTCGTAGAAGCATCAGAACCTGAAGGAAAAGACAAAGGAGCGTT GGAGAGCAATTTAATTGTTTCACCCACTGATTTAACACACGAGTCCCTTCCAAACGGGTCTCTTATGGGGAACTCAACTT CACGTGAAGCTTTGAATACTATGCCTGACAAAGCTTTTGCTTCTGCCAATGAGCAAACATGGGTGGATCAAGCTCCCCCT TTCGTTCCTTTCACGCGCGCCTTGGGACACGAAAAAGTCCAGCAGCTCCTGCCCAATCAATCACTTTTCCCCACAAAGGA GACAACCAAAATCCAGCCGTTCATCCCACCAACTTTGACTGATATCATGGCCAGCAAGGATACACGTGGGCCCCAACCAG CTGGTGATACACTTGGTTCAATTCAAAACCATGACCTTGAGGGCAAGGTCACTCTCTCACGGGAAGGTATTGGTAGCAGC AGCCCATCAACAACTAGGCCCAAGCGTGACATTAAATGGCCCTCCAAATATAAAGACTATATTTAAAGCTGATCCAAAAA GAGAGAGAATTTTTATTGTTTTTTATTAATGAATGAAATCAAAGCTCCAATTGTTTAGGAGCCTATCGTATGGGCCTGAG GCCAACAGTATTAAATAGGTTGTAATTGCAAGAAAGAGGGGGAGAAAAATTGGCAGTTGCCTAAATTTTGTTTGTTTTCC CTTTATTTTCTTATTTTCCTTATTTCTAGCTCTGCTAGGGTTTGCTTG
CDS sequence (LotjaGi3g1v0038700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGCTGCTTCCTACATTACACCACAATCAAGAATCCCTTCTATGACTTTTTCACCAACCGTATCCAGTTTTGCCTC TCTAAGGAACCATTATCATGTTCTATGTGTCCCAAAATTGGCTATAGTGAAGACTCCCAATTGTCTTCCCCTTAAAGGAG CAGCAACAAATGACACCTCAACAGTTGATTACAACTCCATCACCTCTGTTTTTCCAGCTGAGGCCTGTGAGGTAACGGGA GGAGATGCATGTAATGTTGAAATGTACCCTGAAGCGAAGCTTAAACCTGAAGGCAGGGACATCAAGGCCACAACTAGGGA GCTTGTGGATAGAGAGTACCTTGATTACAATGATCCCAAAACGGTGTTCATAGAAGAGGCTTGTGATGATCTTGGAGGAG AGTTTTGTGAACCTCAATACAAGTCAGGATTGTAA
Protein sequence (LotjaGi3g1v0038700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQAASYITPQSRIPSMTFSPTVSSFASLRNHYHVLCVPKLAIVKTPNCLPLKGAATNDTSTVDYNSITSVFPAEACEVTG GDACNVEMYPEAKLKPEGRDIKATTRELVDREYLDYNDPKTVFIEEACDDLGGEFCEPQYKSGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 143 | 123 | 2.1E-45 | – | |
| PANTHER | 21 | 143 | 123 | 2.1E-45 | ||
| Pfam | 33 | 137 | 105 | 4.0E-43 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Chloroplast | A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. |
Expression pattern of LotjaGi3g1v0038700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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