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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0039800 |
| Transcript ID | LotjaGi3g1v0039800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT1G53490.2 RING/U-box superfamily protein; Swiss-Prot: sp|F4HRI2|HEI10_ARATH E3 ubiquitin-protein ligase CCNB1IP1 homolog; TrEMBL-Plants: tr|K7MCP7|K7MCP7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0039800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4297569..4301420) extracted from Lotus japonicus Gifu genome v1.2.
CTCATGAACCACACCACAGTGTTCGTTTTTCATTTTCTTTCTACTCTCTGCACAGTGCAGCAAACAACGAAGCTTTCGCG CCCAAAATCAAACCTCGATTTCTCTCTCAAATTGCACGCTTCTCTTGTTCCTCCAATCCTCGATCTGCAGCATTCTTCTC CCTGTTAGGTACTGCATTCTTCAATCTCTTCCACTCGACGATGCTCTTGATTCTTGACGGAACAGAAATTTTACGAAATT TCAAACCGTTCTTTCTGGAATTTGAATTTTGTTTCTAGGTTTTTTTGTACGAAAGCACAGATTTCAGGTTCGAAAGAGGT GATTGAGTTCAAGTTCTGTGGATACAAGAAAGGAAACAAGCTACAAGCGTTTAGGTAAACGATTCTCATTAAATTCATGG CTTGAAGTTTTGAAAAACATAGGTGAATTTTGGTCATAGTTATCCATTCATGTTTGAAAGGAATTTAGTCAGTTTCAATG TATTTGAATTTTGATTCTTGGAGTAATGTGGCTGAATTTTTGTTTTTTTGGAGATGATCCTTGATTCCTTGTAGCCCTAG GTCAGTTAAATTCTGTTTTTCTCATTTCTATGATAAATTGATAATGGATGAAGGATTTGTTGAAGATATGAAGGTAGAGG GGTGGAAATTAATTGCATTTTTCGCCTTTTCTTGTCTTCTTTCAGTCACTCCAATCCTCAATTTTGGTGGTGGGGCACAA GCATGATGAAGTGTTTTTGCTTTGCTCTTTCCATTGAAGTTTTGATCTTGTTTGATGAAACTGGAATTAATTAAGTCATC ATTTACATATATAACTTTATTGGAAGTTCCCTGAGAAAGTGAGAGAAACTGTTAGCAATCAGAGTCTGAGTGGGTTAGAG TGAGTCAAACATGGAGGAAACTGGCTACGGTTCAGTAAGTTAGGAATTTGAACTGTGAATTAGTAGGCTATGTACAATCT TAATTATTAGGTGCCCGAGTCCAACTATGTTTCTGCAATTTTATACTAATAGGCTACGGTGATCCTGCGTTTGTCAGATC TTTGTTCAGATAAACATCATTGATAGTAAAATGTATTGATGTTTATATTGGCATTTTTTAATGAAAATGTGTTATTGCAA TTGTCCTATTTCATAATAGCACATTTCCAAATCCAATAACTAATCCGGTGCTTTAATATTTACCTACTCAGTCCATTTGT TTTTTTGTGTTCAACTTGTTATTTTAAGTTGGCTTCAGTAGTAGGACAATTGCATTGATTATCATTGTTATCATATTTCT TAGGTACATTATGCCTGTATTTGAGTGCAAATGCTAGCTCGTTTTCCTCTCTACCTTTGGAGTATAGCTACTCTAATTAA TCCATGAAGAATCCTGATGCATGGTTATCTTGCAGGTGTTTAGACCCATACACATGTAAAGTAAGTATCTGACAGCCAAA ATGAGATGCAATGCATGCTGGCGAGAAATAGAAGGGCGAGGGGTTTCCACAACATGTGGTCACCTATTGTGTATCCTGAA GATAGCAATTTTTTACCTTGAGCTACTACTTGTTTTTAATAGAATATAATCAAAATAGTTCATATTAAGTTAGGTTGATT TTCCTCAATTTTCTGTTATTGATGTGGTTGTTTTACATATATTGGGTTTACTTAACAAAGTTAAAAGGCACAGATGATGC TAATAAGATATTAAGTAATGATGGAGCATGCCCTGTTTGTGATCAAGTCCTTTCAAAGAGGTATGAATTCGACTGGAATC TTTTCATGATTACCTGACAAAATAAGAACACATGATTGTGTTATTCAACTGATACAATACTGATTAAGATGGTCATTCAA TGACACAAATCATTGGCATCAATTTGTAATTATATTTTCTCGTGTGATTCTATTATTTATTCTAAATGATCTGTTGTCAA TTTTGAGCCTCATGTATATGATACTTACTAAAATGGTCATTTGTTGGAACTAATATTCCCTTCGATTTATTATCTATACT TTGTAATATGAAGTTTCTGGCATCGTTATTAAATTTTCTGTTGTCAGTTTTTAGCCTCATGGGATGACTTGTTCTTGTCT AATTTATATGTTTCTCATCTTATCAGTCTCATGAAACCTGTGGATGTCAATCCCAATGATGAATGGATAAATGTAAGAAA GCATTCTCCTGTCTCTTACTAACTACATAGTACTCACATGGATATCTACTGTAATTTGATGGATATCATTCCCTGTTACT CTTGTTTTTCTTTATTGCCACTAGCTATGCTGTCAATTATTGTCTTGTTTTCTGTTGTAGATGGCCATGGCGGGAATATC TCCACAGATATGTATCCTTTATGCTCAGTGTTTAGAGGGAACGAAATAGAAAGCATAAAATTAGCTTATATTAAAAAAAG CATTAAATTAGTGTCATATGTTATAACCTCTATAGTAGCCAAAGGTCTGACTAAGGTAAATAAAATGCATCAATACACAA ATTTAAATAGGGTACAATGGACCATTTTTTTCCCTGACCAAATTTAGTGATGAAGAGCGCATATAGAAGCGTGATGTTTT ACATTGGGCAAAAAGAACTGGAGATGCAGTTTAAGATGAACAGGATTGTTGCTCAGTGCCGGCAGAAATGTGAGGTGATG CAAGAGAAGTTTACAGAAAAACTGGAGCAGGTGCATACTGCTTACCAAAAGATGGCCAAGAAGTGCCAGATGATGCAACA GGAAATCGAGAGGCTGAACAAGGACAATCAAGAACTTCAGGAGAAGTTTGCTGAAAAATCCCGGTAAGCGTTGATCAGTT TTCCAGCTTGTACAAATCAAATCTCAGTTGCTGATGTCTCAAACTTATTTCAATTTCAGGCAGAAGAGAAAATTAGATGA AATGTATGACCAGATGAGGAGTGAGTTTGAGTCGGCGAAGCGATCTGCCATTCAGCCTGCACACAGCTTTTATCCCAGAA ATGAACCTGATTTGTTCACTAACCCGCCTAACATAATGGATGAAAGAGAAACCGGCAGAAGAGGTAATACGTAGTACACT AATTTTTGCGGTATCAATATAATGTATCTATTACTCAAACAAAATAACCAACATTTCACTCTTTCTAATGCACAAAAGTA AATGAAACTCTCTCAAAATACTTATACTGAGTTTAACTAGTATCAAAACACAGGAAATCATGAACTTACGATATTGCTTC AGCTTATCTATTTCCAAAATTAGGTAACTTATTTGTTGCAGGTGGGCCGGTATTCACTCCTGACACTCCAGGACCAAGAG AGGATGTATGGCCAGCAAGACAGAAAAGCAATAACTCTGGTCCCTTTGACATCTCTGATGTCACACCAGCAATACAAACA GTCGTTACCGGGGATGCTGGAAACAGAAGGCTTGGTGGTTCATCTGTTTTTGGACCTGGTGCTACCAGTAACCCATCAAT GACTTTGAGAAACTTGATATTGTCTCCAATAAAGCGGCCTCAGCTCTCACGTAACCGCACCCAAATGTTCACATGAGGAA GAAACTCAAATCTGCTGGGCTACATTTCTGAACATTCATGTATTTTGGGTTTCCAGGTTGTAGGATTGAATTTGAAGGAA GATAACCTTCTCTGATATCAGTCAAGCTTTCTTTTCTTATAGATTAAGCTGCTTAAGGGAACAATGAATATATCATTTTC GTTTCCGAGCTTCAATCTGTAGATATATAATCCCAGAGTATTTTAAGGTGATTGGTGAAAAATCCAAAGTGCAGCTTTGA AAACTTATCAACTAAGAAGCCCCTGCAACATTTGGTTCTATGACTAAAAGATGCAAACTGGCGTTTTCTTGACCTTTGCT TTTTGCCTCCAG
CDS sequence (LotjaGi3g1v0039800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGATGCAATGCATGCTGGCGAGAAATAGAAGGGCGAGGGGTTTCCACAACATGTGGTCACCTATTGTGCACAGATGA TGCTAATAAGATATTAAGTAATGATGGAGCATGCCCTGTTTGTGATCAAGTCCTTTCAAAGAGTCTCATGAAACCTGTGG ATGTCAATCCCAATGATGAATGGATAAATATGGCCATGGCGGGAATATCTCCACAGATATTGATGAAGAGCGCATATAGA AGCGTGATGTTTTACATTGGGCAAAAAGAACTGGAGATGCAGTTTAAGATGAACAGGATTGTTGCTCAGTGCCGGCAGAA ATGTGAGGTGATGCAAGAGAAGTTTACAGAAAAACTGGAGCAGGTGCATACTGCTTACCAAAAGATGGCCAAGAAGTGCC AGATGATGCAACAGGAAATCGAGAGGCTGAACAAGGACAATCAAGAACTTCAGGAGAAGTTTGCTGAAAAATCCCGGCAG AAGAGAAAATTAGATGAAATGTATGACCAGATGAGGAGTGAGTTTGAGTCGGCGAAGCGATCTGCCATTCAGCCTGCACA CAGCTTTTATCCCAGAAATGAACCTGATTTGTTCACTAACCCGCCTAACATAATGGATGAAAGAGAAACCGGCAGAAGAG GACCAAGAGAGGATGTATGGCCAGCAAGACAGAAAAGCAATAACTCTGGTCCCTTTGACATCTCTGATGTCACACCAGCA ATACAAACAGTCGTTACCGGGGATGCTGGAAACAGAAGGCTTGGTGGTTCATCTGTTTTTGGACCTGGTGCTACCAGTAA CCCATCAATGACTTTGAGAAACTTGATATTGTCTCCAATAAAGCGGCCTCAGCTCTCACGTAACCGCACCCAAATGTTCA CATGA
Protein sequence (LotjaGi3g1v0039800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRCNACWREIEGRGVSTTCGHLLCTDDANKILSNDGACPVCDQVLSKSLMKPVDVNPNDEWINMAMAGISPQILMKSAYR SVMFYIGQKELEMQFKMNRIVAQCRQKCEVMQEKFTEKLEQVHTAYQKMAKKCQMMQQEIERLNKDNQELQEKFAEKSRQ KRKLDEMYDQMRSEFESAKRSAIQPAHSFYPRNEPDLFTNPPNIMDERETGRRGPREDVWPARQKSNNSGPFDISDVTPA IQTVVTGDAGNRRLGGSSVFGPGATSNPSMTLRNLILSPIKRPQLSRNRTQMFT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 294 | 294 | 1.8E-162 | – | |
| Gene3D | 1 | 53 | 53 | 2.4E-7 | ||
| SUPERFAMILY | 2 | 50 | 49 | 4.29E-7 | – | |
| Pfam | 2 | 43 | 42 | 8.6E-8 | ||
| Coils | 126 | 181 | 56 | - | – | |
| MobiDBLite | 179 | 235 | 57 | - | – | |
| MobiDBLite | 206 | 220 | 15 | - | – | |
| MobiDBLite | 248 | 270 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0039800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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