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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0040100 |
| Transcript ID | LotjaGi3g1v0040100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT1G78710.1 TRICHOME BIREFRINGENCE-LIKE 42; Swiss-Prot: sp|Q9ZV89|TBL42_ARATH Protein trichome birefringence-like 42; TrEMBL-Plants: tr|I3SPC8|I3SPC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0040100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4333535..4339666) extracted from Lotus japonicus Gifu genome v1.2.
CGAAGCTAGTCTCTCTCTCTCTCTCTATAGCAACTCTCTCCTACACAAATGGCAAACATTCATGGTCGGAAAAGTTGCAA GACAAATTCAAAATGGCATTGAATTTCTGGTCACATCTTCTGCCACAGGCCTTTGCTGTTCTTTGTGCAGTGGCATCACC ATTGCACCAAGTGCAGGGAAATGCTTTCCAAATCAACCAATTAAACCAACAAAAAGGGTGTGATTTTTCTCTTGGGAGGT GGATTCATGATCATGCCTCCTACCCTCTCTATGATGCTACACGTGATTGCCCCTTCATTGTTCAGGGATTTGATTGTCTC AAAAATGGTAGACCTGATAAGGAATACCTCAAATATAGATGGAAGCCTTCAGGTTGTGATCTTCCAAGGTATAATTAATA AATTAATAAATTATCCTAAACTTTTTAATTTAAGATTTTTTTTAGATTAATCATAATCATAGATAACAAAAATCAATGAA TGAAAAATGTGTAGGAGAGAGCAGTAGAGAACTTCCGCTACAAAGAATCCAAATTTATTCGCTTTTTGTCTTGACATTTT GTCTAGTTTTAGATATTATATTGTTTATTTCATCACATGGGCATTTTTTTTTTCAATTGGAAGAGTCTATAGGTTTTTTT TCTTTCTTGTGATTTCTGGCTAGAAGATTGGCCTTTTGGATTGAGATCAATTTTCCATTTTTTCTATTTTCTCTTCACAT GGGATGCTTGTTAATTAACAGGTTTGATGGTGTGAAATTCTTGGAGAGATACAAAGGGAAGAAGATCGTGTTTATTGGGG ACTCCATAAGTGACAACATGTGGCAGTCACTTACTTGTTTGCTGCACATTGCAGTGCCAAAATCAAATTACACCTTAAGA AGACCAACAAAGTATCTTCATGTGTTCTCATTCCCGGTAGTCTTCTTAATTTTTCCATCTTTATAACATGTTTGTAAATT ATTTTATAATTGATTTAAAAGTCAAAATCAATTCTAAAAAAGCTTCATTGAGTAGATTCTCTACGAAATAATTGAAATGT CATATGTGATTAGAGAAACACATTGAAATATATTGCATAGTGAAATAGAACAACACTTTGGAAGTCATTTTGCTTCAGTC TCTTGCTTTGATTTCAGTCAAGTGACTAAGGCTTTCTCTGCATCTCACACTTCTTTTCACAGCTTTTAATGGGGCAAGCT GTGAAGTCGTGAAATCGTTTCTGACATGTGAATGCAGAAGGGACATAGTCATACTATTTATAACTCAAGACCATACCCAT CATGGACCCAAGAGTTAAGGCTCACACTTTAACCCACATCAATTAAGTTTACAAATACCTAGACTCAAATAAAATGGATC ACTAGTAACAAGTGAGACTACTTATGCACCACATCTGAATCATGAATTAACCTGTTTTTCTGAATGTCAAAATTGATTCT GACAAAAGAAAAATAAAGTGATAGTTTGCTATTAATTGCTGACACATTTTGAGCATTGATATAATTGTTTGATTAGCTAG CATAATATTCCATTTGGGATTATAGGAATACGAAGCTTCAATCTTGTGGTTGAAAGATGGGTACCTAGTGGATGTGATTC GTCATAAAGAACAAGGCAGAATTCTGAGACTGGACTCCATTACATCTGGGAACATGTGGAGAGGGGATGTTTTGATTTTC AACACCTACCATTGGTGGGTTCGTGAAGGAACATCTCAAACGTACTCAAATCATTTAACCTTATTTTTGCTGATTTTGGA TGAGTGACATTACTTAGGCTAATGCCTTCTTCACATTATTGTTTCACAGACACTTTCAAGTGGGTAATGAGATAATCAAG GACATGGATCCCTTGGAAGCTTACAAGATTGGGTTAACCACTTGGTCTAAGTGGATTGATTCTAACATTGATCCCTCAAA GACTACAGTTTTGTTCCAAGGAATTGCTGCTGCACATTCTGAGTAAGTTAAATTGACCATCCCACTCCAACTAAAGTTCA TCTAAAAAATCAGGGTTTTGATTCATTCACAGCTCACTTTCTCTTTCATCTCATTTCTACATTTTTCTCTTCCTTTCTCT CACTTCTATTTCTATCACATCACTCATCATATCTCACATTTCTCTCTTTTTTTCTTCATATATCTCTAGGTGTGAGTGTG CTTTGAGTGTGAACAAAACTTTATTGGAAAAATAGTTGGATATGTCCATGAGAGTGAGGTATAGTCCTCACTTTCTTGTT GAAAGTAGAAATCCTCCTCTTACTTGATGAAAGCATACTTGGTCTCAAGTACTTGCCCCCAATAAAATAATTACCAACGG AAACTACTCAGATTTTGTAAGTTTTTAAGGAAAATGAGAATATGAGCATGAAAATATCAATGAAGTTCAGGTATTTGGAT CCCCTTCATCCAAGTTGTTTCAATCCCCTCTCCACCTGAGATATATGCGGTGAGTTTTATATCTAATGACCTAAAATAGT TTGGAATTCGGACCATGAACTCGGATCCAGGGTTCGAAACCGGCACAAAGACAAGGAAGTTTGCTTTGTGTCATCTAAAC GTTTACGTATACTAGACTCAACTTTATTCAAAAATCACCTCCTTTTTTTGCCTGAATTTTGTAGGGGAAAGAGCTGTCTT GGACAAACTCAGCCAGAGCAGGGAGCAAAGCCACCTTATCCTGGTGTGGACATTGTGAGGAGCGTTTTGAGCAACATGAA AACTCCAGTTTATTTGCTTGACATTACTTTGCCTTCACAGCTGAGGATCGATGGCCACCCTTCTGTATATACAGGACGTG GCACTTCTTTTGAAGATTGCAGTCACTGGTGTCTTGCTGGTGTTCCTGATACATGGAATGAAATCTTGTATGCTGCTTTG CTTGGAAATTAGTATTTTTATCCTTTGTATCTCTAACATGGATCCTCTGTTATTTAGATAGTAGAAATAAGATCTGTTAG TGTTACTTTAGTGAAGTAGCATTCCTTGACGTTAGTACCCAGCAGGTATCTGCACTTGTGTTGGGGTATTGTAAATGGAA GTTGATCAGACTGTTCAAAGGCGATATCGTATCAAGTCACACAGTATCAATCTAATTGCAGTAGTTAAGATAAAAAAGAA AAATATATACTGTATCATATGAAAATAAAAGAAATGAGCCTTCTTTATGATATTACCAATAATCACCACAGGAACATGAT CCATCTTTAAAATGGTGGAATCTATTAATGTCTCTGACAATTATTTCCCTTGAAACAATTTTACATACAAATTTGAAAAA GGTGTGGCAATCAACACAGACTCTTAAATTCTTCTTCACCCTTATAGGGGCTCCAGGTGGTGTGGCAATTAATCCAAAAG CTACAGCTAGTTTCTCACTATGATGATATAAGAGTTGTTCCTTTTCACTTTGGTTCACATTATGTAGATCAGTCTCTATG ACGGGACTGTATCCAGCTTTACTTAGAAGTTCACTCAGCTGATCCAATTTAGCATAGATTTCATCACTTCTAGAATGACT TCTATCTCCAACAATGAAGGTAAATACCTTGTCTTTCATCTCAATCCAACTCATTCCAGGCTCTTTCTTCACCTTGCTCT CTTTCATGAGCTTTCTAGCCTTGGCAGCATTTTCCCACATTTCAGCTGATGAATAGATGTTTGCAAGGAGAATATGAGTT CCAGATTTGTCTGGCTCAAGAACCAAAAGCTTCTCTGCAGCTTTCTCTCCAAGTTCTATGTTCTTATGGAGTCTTGCAGC TCCAAGCAGTGCCCCCCAAACAGAGCCATCAGCCTCAAATGGCATGGAATCTACAAGCTTCACTGCTTCGTTTAATTTTC CGGATCGTCCAAGGAGATCAATCATGCAAGCATAATGCTCTTGTGTCGGTTTAATCCCGAATGTTTCCTCCATTGTTTCG AAATAATGTTTTCCCTCATTTACCAAACCAGCATGATTACATGCACAAAGAACACTGACTAAGGTAATGTGGTTTGGTGT CACACCATCTTTAAGCATTTGGTTGAACAACTGAAGAGCCTCTTTTCCATGGCCATGCTGAGCCAACCCTCCAATCATTG CAGACCATGAGACAATTCCCCTCTTAGGTATCTCAGAAAAGGCGCGATCAGCGTCCTCGATGCTTCCGCATTTTGCGTAC ATATTAACCAGAGAATTGCTGGCAAAAGTATCAGACATGAATCCAAACTTGATGGCATGGACATGTAATTGTTTCCCTTG TTCATATGCAGATAAATTTGCACAAGCATTTAAAAGAGAACTGCAGACAAATGGGTCTGACTTGATATCTGCACCTTGCA TTTGCAAATATAGCTTCAAAGCCTCCTCTCCATCCCCATATTGAGAATATGCTGTTATCATGGAGGTGTAAGCTACCAGA TCTTCCCAAGTGCGCTCTTCAAATATTTTTGAAGCTTCGTCTATATGGCTACATTTTCCATACGTGTCAAGAAGACTGTT TATAACATAGAAATCTGAATAAATTCCAGATTTGATGGAAAGTGTATGAATTTGCTTGCATAGCTTAATAGCCTGCAAAC TGGCGACGGATTTGAGAACTGTTGACAAAGTAGTTTGGTTGAAATCTACATTCTCATTGTGCATTTCAGAAAAAAGTGAG ACTGCCTCTAAGTCATCACCGCACTGTGAGTAACCAGAGATCAAAGCATTCCATGCGATGATATCCTTCTTTGGCATCAA CTCATATACTCTTCTTGCATCACTGAGCATTTCACACTTGGAATACATGTCGATCAATCCAACAGCTACAAAAAAATCGG AATCAGTATCAATCTTTATCAAACAAGAATGTAACTGTCTACCCAAGTCCTTGAACCCCACTGCAGCACAGGCCTTCAAA GCACTTGATATGGTAAACACATTGGGACAAGCTCCTGAGCTCTTCATCTCATTCAAAAGTGCCAAAGCCCAATCATTACA CTCATGCTGAACGCAACCAGCAATAACTGCATTCCAAGAAACAATATCAGGGTGGGTGATTTCTTCAAAAACAGCCACTG CATTTTCAATCCTCCCTCCTTTTGAATACATGTCAACTAAGGCATTTGCGGAAAATTGATCCAATCCATGTCCTAGTTTC AGCAAAAGCCCATGAACAGTCCCTCCAAGACTGCCATTCCGCAATCCAGCACAGGCATTCAATATAATGGAAAGGCTGAA TTCATTAGGCCTTATTCCACCCCGAACCATTTCTTTAAACAAATCCACTGCTTCAACACAGAAATCACTTTGCACATAAC AAGAGAACAAGGCATTCCACGAAACCACACTCGGCGCCACAATTGAGCCGAACAATTTCCTAGAATCACCAAGCTGCCCG CATTTCGCATACATAACAACCAAAGTATTAGCAACAAACCCATCAGAATCAAACCCTGTGACCACAGACATGCCATGAAC CTTCCTCCCCATATTCAAATCCTTCTTGATTGAGCACGCCTTGAGAACGCTCGGGAACGTGAACTCATTGCACTTAACAC CCAACATGCACATGTCATTAAATGCCAACAGAGCTTCCTTCCCAAACCCATTTTGCACATACCCAGATATCAAAGCAGAC CAAGAAACCACCACATCCGTTTCAGTACTTTGATCAACCAGCTTGCGTGCATACCCAAAACGGCCACACTTCGAATACAG AGATACCAAATGATTCCTGAAACTTGGGTCGTGGGAAAATCCAAACCTGATCAAGTGGGCATGGAGTTCCATGCCTAATG TCAGGGACTTGGAAGCAACACACTGTGACAAGAGGTTGGTGTAGGATATGGGGGGTTTTGTGAAGCTTTGGAAACATTGT GAGTTTGAAACAACGTTGGTTTGAGAATCTACGATGGTACGAGAAGTGGTGTGTATAGTTTGAGGTTTGAATGACAGGGA ATTTATGTAAGAAAATCTTAGAGTAGTTTTGTTCATTGACAAAGTGCTATGGCTACTCTGCACAAGTGCACTTCGTTCCT TAGCCGAATTTGAAAACAGACACTATTAGAATTAAGAATAGGGTCTGGTTCAATATAATATAAGTTCAAAACTGTTGATA TTTTCTCAGATTTTGATTAAGGCATGCATCAAGGCTGCTTTGTATCACTCTA
CDS sequence (LotjaGi3g1v0040100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTGAATTTCTGGTCACATCTTCTGCCACAGGCCTTTGCTGTTCTTTGTGCAGTGGCATCACCATTGCACCAAGT GCAGGGAAATGCTTTCCAAATCAACCAATTAAACCAACAAAAAGGGTGTGATTTTTCTCTTGGGAGGTGGATTCATGATC ATGCCTCCTACCCTCTCTATGATGCTACACGTGATTGCCCCTTCATTGTTCAGGGATTTGATTGTCTCAAAAATGGTAGA CCTGATAAGGAATACCTCAAATATAGATGGAAGCCTTCAGGTTGTGATCTTCCAAGGTTTGATGGTGTGAAATTCTTGGA GAGATACAAAGGGAAGAAGATCGTGTTTATTGGGGACTCCATAAGTGACAACATGTGGCAGTCACTTACTTGTTTGCTGC ACATTGCAGTGCCAAAATCAAATTACACCTTAAGAAGACCAACAAAGTATCTTCATGTGTTCTCATTCCCGGAATACGAA GCTTCAATCTTGTGGTTGAAAGATGGGTACCTAGTGGATGTGATTCGTCATAAAGAACAAGGCAGAATTCTGAGACTGGA CTCCATTACATCTGGGAACATGTGGAGAGGGGATGTTTTGATTTTCAACACCTACCATTGGTGGGTTCGTGAAGGAACAT CTCAAACACACTTTCAAGTGGGTAATGAGATAATCAAGGACATGGATCCCTTGGAAGCTTACAAGATTGGGTTAACCACT TGGTCTAAGTGGATTGATTCTAACATTGATCCCTCAAAGACTACAGTTTTGTTCCAAGGAATTGCTGCTGCACATTCTGA GGGAAAGAGCTGTCTTGGACAAACTCAGCCAGAGCAGGGAGCAAAGCCACCTTATCCTGGTGTGGACATTGTGAGGAGCG TTTTGAGCAACATGAAAACTCCAGTTTATTTGCTTGACATTACTTTGCCTTCACAGCTGAGGATCGATGGCCACCCTTCT GTATATACAGGACGTGGCACTTCTTTTGAAGATTGCAGTCACTGGTGTCTTGCTGGTGTTCCTGATACATGGAATGAAAT CTTGTATGCTGCTTTGCTTGGAAATTAG
Protein sequence (LotjaGi3g1v0040100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALNFWSHLLPQAFAVLCAVASPLHQVQGNAFQINQLNQQKGCDFSLGRWIHDHASYPLYDATRDCPFIVQGFDCLKNGR PDKEYLKYRWKPSGCDLPRFDGVKFLERYKGKKIVFIGDSISDNMWQSLTCLLHIAVPKSNYTLRRPTKYLHVFSFPEYE ASILWLKDGYLVDVIRHKEQGRILRLDSITSGNMWRGDVLIFNTYHWWVREGTSQTHFQVGNEIIKDMDPLEAYKIGLTT WSKWIDSNIDPSKTTVLFQGIAAAHSEGKSCLGQTQPEQGAKPPYPGVDIVRSVLSNMKTPVYLLDITLPSQLRIDGHPS VYTGRGTSFEDCSHWCLAGVPDTWNEILYAALLGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 354 | 354 | 1.3E-191 | ||
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| PANTHER | 1 | 354 | 354 | 1.3E-191 | – | |
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| Phobius | 21 | 29 | 9 | - | – | |
| Phobius | 30 | 355 | 326 | - | – | |
| Pfam | 42 | 96 | 55 | 7.4E-21 | ||
| Pfam | 97 | 350 | 254 | 6.7E-75 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0040100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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