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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0040600 |
| Transcript ID | LotjaGi3g1v0040600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NHL repeat protein; TAIR: AT3G14860.1 NHL domain-containing protein; Swiss-Prot: sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2; TrEMBL-Plants: tr|K7M265|K7M265_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0040600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4388573..4393491) extracted from Lotus japonicus Gifu genome v1.2.
GAGAAATTGATTGAGTCGGTGAAAGTGAACAACACTGAAACAACAACAACTGAACAAGTGAAGTACCCACTTCATCAAGT TGAAGCTTAGGTTCTGTGCTGTTCATTCCCAACACGTCCCTTCTTCACTTCCATAGCTACTGAGAAATCACCATCTCTTG GATCACTCACATTCACATAGCTATGAGAAATCACCTTCTCTTCTGTGCTTTCCTAGCACTTGCTCTTACATGCTCTCTTC ATTTTCAAGCTCAAGCTGCTCCTTCAGGTGAACAATATCTCAAATTAGAAAGTCAATCTCCTTTTTGCTAATCTATTAAA AAAATTGATTTTTCTTTTCATGGGCATGCTAAAGTTTGATCCTTTTTTTCGATTTTACTAATTGGGTCATGCACATTGAA GAACCATTTCTGGGTTATTTTCCTTTTTTTTTTTGTTGTTTCTGTTCTTTCTCTCCAAATTTGTTATGCTTAATTCTGCT GAATCTCAATGAGCTTTAATATGTTATCATTTTTGTGTTATTTTACTATGCCCTTAATTAAAAAACGAAATTATATGATG TGTTAACCAGTTTAGTTTTTTCATCTTTCTCTTATATTTTAGCTCACTTGAACTAGTTACTGTTAATTTATCAGGATCAT TGATCAAGCATCTGTCTTCAATTGTCAAATGGACAAGGTCTAACTCTAAGACCCCTCAGTCAGGTTGGATGTGTGCTCTT GCAATTGTTTTGATTCTGTGATGATTAATAAGTTTAATGCATTGTGAATGGGACAGTATGTTCATGGTGTGGTTAATAAA ATGCAATTTTATTGTTGCTTCACAGATGGGAATGTTCTTCAATTTGAGGATGGTTATGCAGTTGAGACTATTGCGCAAGG AAACGATATTGGGGTCGTTCCTTATGGGATCCGTGTCAACAAGGAGGACGGTGAACTCTTTGCGGTTGATGCAATGAATA GCAACATTGTTCGAATCACCCCACCAATTTCCCAGTGTATGCTCACTTGAGTTCTCTATACCTGTTTTCAAATTTGATTC CTCGGTACATGACAGATTTGTCGTGCATTCTTTGAATGTCCTTATATTCCCTTATTTTAAATTGGTTCTTATGCTTTGCA GGTAAAACATACAATTATGAACGATTATTTGAAAAAAATGAATATGTGCTTTAGTCTTTGTCAGGTTCAACTTAAGCAGG CATTGATAGTTTCCCACGCAAAAATAAGTTTCACACACGAAAAAGAAAATTGGAAGAACCGAAGCCTAGGCCTTATTGCT TTATGGATTTCTCATAGTGGCATGCTAGGATCTGCAATTCTAATTAATGAACCAGACTTTTGAACCTCCATTTTATTCCC TCTGTTTCCTCTTTACATTATTGCAGATAGTAGAGGAAGATTAGTAGCAGGGTCTTTTCAGGGATACACAGGCCATGTGG ATGGAAAACCAAGTGATGCTCGTTTTAATCATCCCAGAGGCATAGCCCTGGATGATAAAGGGAATGTTTATGTTGCTGAT ACTGAGAATCTGGCCATCAGAAAAATTGGAGATGCTGGTATGTGTTAACCGAGTTACAAGAATGCTAGAGTTCAGGATCT AGTCTGAGCTGATGTAGACTAGTAGTGTCTGACAATTTCTAAATTGAGTTTTCTAATACATAGATGTGTTTGTTTATTAG TCATGAGATTTGGGAAAAAGGAAGTTCCATATAGATGTGTTAGTTTACTAGTCATGAGAATTGGGAAAAAGGATACTTTT ACTGATCTTTGTTAGTATTTTTTAGGTGTAACAACCATTGCTGGAGGAAAGTCAAATGTTGCAGGGTACAGGGATGGGCC CAGTGAGGATGCTAAGTTCTCGAATGATTTTGATTTGGTATATGTTCGGCCAACCTGTTCCTTGTTGGTCATTGATAGAG GAAATGCGGCTCTTCGGCAGATCTTTCTCAACCAGGAGGACTGTGATTACCAATCTAGTTCAATTTCCATGATAGGTTTA AATCCTTAATTTGTTTGACATGTTTGGTTATTAATATAATCACCATATCTGTTGATATATGATAAGATGATAACAATCTG CTGTTTTTTCTTTGACCTTCCAAACATGAGTACTAAATAGGTTTGAATGACTCATTCTGAATGAGTCATTCAAACCTATG ACAAAAAAATTCTTGTCTTTGCATCATGTGATTCTGATGTTAAATTTCTGGTTCTGAAATCTGGAAATCACCCATACACA GACACAGAAAAGAAAGAAGAAATAAAGGGCATACAGATATAAGTTGGGAAGAAAGAACCGTAGAAAATATGTGTGCTGAT TGTATGACCTCAGTCTTTTAACAAACCACAGCCAACATCAGTTGCTGCATAATTTCTTATGCCATTTGTTTGCATCTCTC TTATGGCATATTTTAGATAAATTGTTGATGGGGGCTTTGTTAGCCATATCTTGATATGATATGGTAGCTTTGTATGATTT GGTTCCACCTTCAAATTTAAGGGAACAGTTGAGAACTAGCTTTCTGGTAGATACAATAAAATATGTCTGGCTGGTGAAAT TACTTGGCGCTTGGTCTTAATGTGATGCACAAATGGATTGGAAAATTCCAGTCAGACAAGTGAAATTTAACTTCATTGTG TTGTTCTTGGTTAGTCTGACTTATTCTTTGTCGAAATATTGTCCATGAAGTGTGTCCTGGTGAGAGATGTAAAATTGCTG CTGTAATGAGTAGTGAAGTGAAAAAAAAGGGGGAAATGTATATTCTAACACAACATATATTTGTGTGGATGCACCGGTTT ATTTAGTCCATTAAATGCTATCTATGACCGTTTAACTCAATCATTTGTTTTGAAATTGCATTGTTCTTGGTGGTTTTCTG CAGATATCCTCACAGTTGTTGGTGCTGTCATAGTAGGATATGCTGTATGCATGCTTCAGCAGGGTTCTGGTTCCTCTTTC TTCTCACAAACAGTATGTCTATCATGATGTGTTAAGAGCAATATGACATTTTGCATGCTGCAACCTCAAATTATTATTAT GTGAAAGTCCAAACCTCAATCTAACCTCTTGCTCATTTTCCAATGTGAAATAACTTATTTATTATCATTTTGGTTGGGAT AGGATTTTTCTCCCATTCATTTCCTATCATCCCTAACCTGAAAATTTTCAATTTTCTTTATGCCTTTGTATGTCATAATG TCTGAGACCTAATACATGAATTGTCATGTCATGCTGTTTTTTTTTTTTTTTTTTTTCTGAAAATTCATCCTTGCTGTTTA GCTAATTACACTACATGAATTGTCATGAATGTTGCAGCAACCATCAGAAAAAGAATTCAAAGACCAAGCAAGCAGCGAGA AACCTAAGGAGAGTCATAAAGAGGAGCCAGGATGGCCATCTTTCAGACAACTTGTTGCCGATCTTTCTAAGCTCTCTATT GATGCATTGAATAGTTCGTTCTTTCAATTCATACCCGCACGTTTCAGATCAGACGCCACCAAGAGAGGCCTCACGCCGCT GAAAGATCGTCTTAGGATGCCTGAAGATGAAGTGGAGCCACCATTGGTCAGCAGGCACAGGCAGAGTGCTCCAGCTCCTC TTACTGAAAATATGCAGGTCCATACTCCAAGCACAACAGCTGAGAAATATTCAGAAATGAAGCCCCCTAAGATAAAATCA AGCACTTCAAAGGATCCTTCTTTGTCAAGCAAGCACCGTTCCTCAAAAAGACAAGAGTATGCTGAATTCTACGGATTCGG TGAGATTCCACCTCAGACTAAATCTAAGACTCAGAAACAAAGGTCAAGACTTCGGCAACGAGAGAAGAGTGGGGAAGTTG GATCCGAGCAAAAGCCAGTTGAGATCAGGGGTGTTGATTATGGTAGTTCGAAGTTTGAGCATTACAATATGAGGACTAAG TATGTACCAGAGGAGTCCTTGCGTTTCAATACTCGTTAGCAGGTTTTACATGATTTTTCATGTTCACCAGTGTCCTGTTG TCCTTTTACATTGAATATGTTCATCTACATTGGTTAGGAGTTAGTCTGTAACTGAAGCTGAAGCTACATTCGAAGTAAGA TTCTGCGTTTAGCATAGCATGATATGGGGTGTAACTAATTTCTGACCAAACACTCAGAACTTTTGATGAATTAGCATCCC ACATACAAAGGTGCTCATTTCAAAGAGATTACTATGTCTAGATTGCTTAACTATCCTAAAGTCTATCACAAGTGTGCTGG TCGATTAAATGATTGGGTTAGATATGGTTTCTGTTGGGAATTCAAGTGAGTTTTGGAATTTTACACTGGTTATTGATGGG TTGGATAAAGATATTGAGAACAAACGGTTGAAAGAAAATAAGTCCCAGACGGAATAGACTAAGGGCACTACAATAGTTTT ATATAGCCTTGGGTGTAATAGTTCCAGTTTCTCTAAGGTTTTTTGGATCACAAAGCACCCTATAATAAGTCCATCACACA CCTTAAATGAGAAAACATTATGGATATGCGCTTCCACATGAGAGTCCAAATAGCCCATGATCCAAAAAGAAATATGGAGC CTGCAACAAGTTAAAAAAAGAAAAGAAAATGGGTTCAATGACAAAAAAAGTTAACATAACAATGAGCTCCTAAGCCTCAA GTTCAACTCAACGGGAGCACAAGCTCGCACAGGGTCTTTAAGGTTCCGAGTCTTAAAAAAAAAGAATACAAACCCACACA AAGGAGCCTGAAAAAAATTACAAAAAAGAGAATGAGCTCAATTGCAAAATAAAAAACTATCATGACAATGAGCCTCTAAG ACTCAAGTTTAAGATAGAAAGAACACACAACTGACACATGTGACCTTTGAGGTTCTGCTTGAGTATGAGCCTGAACAAAA GAAAGTATAACTCAACTAGTTCACTTAAACTTGAGGGGG
CDS sequence (LotjaGi3g1v0040600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAATCACCTTCTCTTCTGTGCTTTCCTAGCACTTGCTCTTACATGCTCTCTTCATTTTCAAGCTCAAGCTGCTCC TTCAGGATCATTGATCAAGCATCTGTCTTCAATTGTCAAATGGACAAGGTCTAACTCTAAGACCCCTCAGTCAGATGGGA ATGTTCTTCAATTTGAGGATGGTTATGCAGTTGAGACTATTGCGCAAGGAAACGATATTGGGGTCGTTCCTTATGGGATC CGTGTCAACAAGGAGGACGGTGAACTCTTTGCGGTTGATGCAATGAATAGCAACATTGTTCGAATCACCCCACCAATTTC CCAGTATAGTAGAGGAAGATTAGTAGCAGGGTCTTTTCAGGGATACACAGGCCATGTGGATGGAAAACCAAGTGATGCTC GTTTTAATCATCCCAGAGGCATAGCCCTGGATGATAAAGGGAATGTTTATGTTGCTGATACTGAGAATCTGGCCATCAGA AAAATTGGAGATGCTGGTGTAACAACCATTGCTGGAGGAAAGTCAAATGTTGCAGGGTACAGGGATGGGCCCAGTGAGGA TGCTAAGTTCTCGAATGATTTTGATTTGGTATATGTTCGGCCAACCTGTTCCTTGTTGGTCATTGATAGAGGAAATGCGG CTCTTCGGCAGATCTTTCTCAACCAGGAGGACTGTGATTACCAATCTAGTTCAATTTCCATGATAGATATCCTCACAGTT GTTGGTGCTGTCATAGTAGGATATGCTGTATGCATGCTTCAGCAGGGTTCTGGTTCCTCTTTCTTCTCACAAACACAACC ATCAGAAAAAGAATTCAAAGACCAAGCAAGCAGCGAGAAACCTAAGGAGAGTCATAAAGAGGAGCCAGGATGGCCATCTT TCAGACAACTTGTTGCCGATCTTTCTAAGCTCTCTATTGATGCATTGAATAGTTCGTTCTTTCAATTCATACCCGCACGT TTCAGATCAGACGCCACCAAGAGAGGCCTCACGCCGCTGAAAGATCGTCTTAGGATGCCTGAAGATGAAGTGGAGCCACC ATTGGTCAGCAGGCACAGGCAGAGTGCTCCAGCTCCTCTTACTGAAAATATGCAGGTCCATACTCCAAGCACAACAGCTG AGAAATATTCAGAAATGAAGCCCCCTAAGATAAAATCAAGCACTTCAAAGGATCCTTCTTTGTCAAGCAAGCACCGTTCC TCAAAAAGACAAGAGTATGCTGAATTCTACGGATTCGGTGAGATTCCACCTCAGACTAAATCTAAGACTCAGAAACAAAG GTCAAGACTTCGGCAACGAGAGAAGAGTGGGGAAGTTGGATCCGAGCAAAAGCCAGTTGAGATCAGGGGTGTTGATTATG GTAGTTCGAAGTTTGAGCATTACAATATGAGGACTAAGTATGTACCAGAGGAGTCCTTGCGTTTCAATACTCGTTAG
Protein sequence (LotjaGi3g1v0040600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRNHLLFCAFLALALTCSLHFQAQAAPSGSLIKHLSSIVKWTRSNSKTPQSDGNVLQFEDGYAVETIAQGNDIGVVPYGI RVNKEDGELFAVDAMNSNIVRITPPISQYSRGRLVAGSFQGYTGHVDGKPSDARFNHPRGIALDDKGNVYVADTENLAIR KIGDAGVTTIAGGKSNVAGYRDGPSEDAKFSNDFDLVYVRPTCSLLVIDRGNAALRQIFLNQEDCDYQSSSISMIDILTV VGAVIVGYAVCMLQQGSGSSFFSQTQPSEKEFKDQASSEKPKESHKEEPGWPSFRQLVADLSKLSIDALNSSFFQFIPAR FRSDATKRGLTPLKDRLRMPEDEVEPPLVSRHRQSAPAPLTENMQVHTPSTTAEKYSEMKPPKIKSSTSKDPSLSSKHRS SKRQEYAEFYGFGEIPPQTKSKTQKQRSRLRQREKSGEVGSEQKPVEIRGVDYGSSKFEHYNMRTKYVPEESLRFNTR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| PANTHER | 5 | 475 | 471 | 1.8E-225 | – | |
| Phobius | 5 | 17 | 13 | - | – | |
| PANTHER | 5 | 475 | 471 | 1.8E-225 | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| Phobius | 26 | 478 | 453 | - | – | |
| Gene3D | 35 | 219 | 185 | 1.3E-31 | ||
| SUPERFAMILY | 51 | 175 | 125 | 9.81E-9 | – | |
| Pfam | 135 | 161 | 27 | 5.7E-7 | ||
| MobiDBLite | 261 | 291 | 31 | - | – | |
| MobiDBLite | 272 | 290 | 19 | - | – | |
| MobiDBLite | 332 | 450 | 119 | - | – | |
| MobiDBLite | 332 | 349 | 18 | - | – | |
| MobiDBLite | 356 | 375 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0040600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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