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LotjaGi3g1v0044000.1

Overview

Field Value
Gene ID LotjaGi3g1v0044000
Transcript ID LotjaGi3g1v0044000.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Homogentisate 1,2-dioxygenase; TAIR: AT5G54080.1 homogentisate 1,2-dioxygenase; Swiss-Prot: sp|Q9ZRA2|HGD_ARATH Homogentisate 1,2-dioxygenase; TrEMBL-Plants: tr|I1LSW3|I1LSW3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0044000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:4693373..4698343) extracted from Lotus japonicus Gifu genome v1.2.

CTCATGTTCATATCCTTTTGACGTGTCATTACTTGTATCTACCTTAATCACACACACTTCCGTGTCACAACAACTCCACT TTCCACAACCTTAAACCGATCACCCTCGTTTAACACGACACGACACTCTTCACTCTTCATCTCACAGTATCACCATTTTC TCGTTTCCTCAAAGTTCCAAAACACACGTTGTTTCTTGTCGTTTTCACTCTTCCCGTGAATCATGGAACATTCCACCGCC GGCGACGACTTCAACTACCTCTCCGGCTTCGGCAACCACTTCTCCTCCGAGGCCCTCGCCGGAGCTCTCCCGGAGGCCCA GAATAGCCCCCTTATCTGCCCCTATGGCCTCTACGCCGAGCAAATCTCCGGCACCTCATTCACTTCTCCTCGGAATCTCA ACCTCTTCAGGTTAATCACCAACCAAACCACTTTCATCATTCTTCACATCAAATTGGTCCTATGTTCGAAGCTGATTTTT TGTTTGTTTTTGGGTTGTGAATGTGTAGTTGGTTTTATCGGGTCAAACCATCGGTGACCCATGAACCGTTCAAGCCTCGG GTTCCTTGTAATGGAAGGATTTTGAGTGAGTTCAACCACTCCAACAGTTCTACTAACCCAACACAGCTTCGATGGAAACC GATGGATTCGCCTGATTCACCCACGGATTTCATTGATGGGTTATCTACGGTTTGTGGTTCTGGTAGCTCCTTCATGCGCC ATGGATATGCTATTCACATGTAATCAATTGATATCCTGTTATTAATTCAGTTGTTGACTTCTATTTTTGGGTGGTGCTTA TAGTCATGAGCTTAATTCACTTCAATTATGATGTATGCTCTATTCTTTGTTGGCTAAGAATTTTAGGATTTTTGATCTAT GGTGGAAGAGAGTTGATATCAATCATACACCTGAGTGACCTGACATTGGTGGGGTTAGGGAGTAGGGACATGTTTAAAGT GAGCACAAATGTGTTATTACATGTCAAGTTAGGAATGCTGATAGTTGATTTGGGTGGTCCTCAACTAGGACAAGATCTCT GTAGTTGGTGAGACTTTAAATGCTGATGCTGGAGGTGATATATATACACTGCATAGACATTGACCCTCTTGCAGTCATGC TATTTTTAGGGATATCTTTAGGAGTGAATTAAAAGGGGCGAAGATTAGTAACTAAGTGGCTAAAATCTTCTATTGGTGTT ACTTGAAGTGCAATAAATCTAAGATATTGCTCCCTGGCTATTTGGGATCTAGTTCTCTGTTACTAGGGGTTGAGTCATGA AGGGATTTTATCCCCTCTTTGCCTCTATCCAGAAATTGGGAGATGCTGTGAGGGATTTTAACCCCTCTTTGCCTGTATCC AGAAATTGGGAGATGCTGTTTAGTTATTAGGCTCATAAAAGCTGTGCCCCAGAGGCCTCATTTTAGTGGGTTTGCATCAT GTTTCCCTGGTCCTCCTGCACTAATTGTGTGGGTCACAGGCTGGGTTGGTGGGGTCCCAAGTTTCAGTCCAGAATAATTG TCATGGTCTAAGCGAGATGAGTGATGAGTAATCAAGTAATTGGACAAGTTGTTCTATGCTAAATGATTTGTTGACATAAA AGTTTATTTATGTTTGCCATAAGTAATGTTACTATGGATTGCTGCCATAAAAACGGTTTTGTTAGCGCGGACTGATTTTA AGGGTACAAATAGTGGAAAAAGAAATTAGAAAGGAAAGTATTTATTGCAATGGAAATAGATTTGGTATGGAAATTTTTTA AATTTTGAAGGTAACATTAGCTCTTTAATAAATGGGAAATGTTATATGACTTATAGGTACACTGCTAACAAATCAATGAA CAATTGTGCCTTTTGCAATGCTGATGGTGACTTCTTGATAGTTCCCCAGCAAGGAAGTAAGTAACTATAACAAGCTCCTT ATTTGTTCACTAGAAAGTTGTATTTTGGGTTTATTGCATTGTGCTTGAGTACTTGTGTTAGAAGTTAGAACTCTTTCTGT ACCCATATAATTTCTCTATTGATCGGCCGTCGGCCCTCAATGAACTCAGGGTCCTGTCTTTCCCTTTCTGCCAAAGTAAA GATAGTGTACATCTTCCTCTTGATACTTGAATGCAAAAGGAATTTCCTTGTGGAAGGATGCATTTAAATAATAAGTAATA TTTCTCAGAGGGCTGGTGTGAATGTCTTAATGAATGGGTTCGTTGGTTTTTATATTTTCCATGATTTCTTTCATTGGAGT TGTCTTTGGCTCTTTATGTAGAATCTTGTTACTAGATGGATTAATAATTCTCACCATTTTTTAATTCTTCCATGCATTGG TACCTGCTTTGCTGTTGGAGCTAATACCAGTTTCATGATTCTTAGAGTATGCTTTAATGCTTCCTGTGCGTCAGCTTTTG GAGAGAAATCTTATCCCATTTTATTTATCTTTCTGAACACCTTCTGCTGGATTTGCAGGACTCTTCATAACTACTGAATG TGGAAGATTGAAAGTTTCCCCAGGTGAAATTGCTATGCTACCCCAAGGTTTTCGTTTTACTGTCGATCTGCCTGATGGTC CATCACGTGGCTATGTTGCTGAAATTTTTGGTACTCATTTTCAACTTCCTGATCTGGGACCAATAGGTATCTTCTCTCTC TTGTAGTTAAGAAATTTAAGCAACCATATTTATTGCTTAAAAATTCATAATATGTATAATTAAAAAAGTTTTGTTTGCAT CTTAGGTGCTAATGGTCTCGCTGCCCCAAGGGATTTCCTTGTTCCTACAGCATGGTTTGAGGATAAATCTTATCCTGGGT ACACCATAGTACAGAAGTTTGGTGGTGAACTATTTTCTGCAGTACAAGATTTCTCTCCCTTCAATGTTGTTGCTTGGCGT GGTAATTATGTTCCGTATAAGGTATGGTTTTCTCATCTACACTGTTTAAAGAGAATGAATGAGTCTTAATTAAAATCCTC ATCATGTCATTTTCAATTTGTCAGGATCTGGGATAAGGTTCCTGTGAAAACTTTCATCTAATATGATTAATTTGGCTACT CTTCTTTTCACTTGCAGTATGATCTTAGCAAATTCTGCCCTTACAACACAGTTCTCTTTGATCACAGTGATCCATCAATC AACACTGGTATGCATTTTCCAAAAGAATTTTCCCTGAACCACTTTCTCTCGTCTTTTTCGGTTCAGTGAAATTCCTTGTT TAACAATTATTGCTCTTATATACAGTGTTGACAGCACCAACTGATAAGCCTGGAGTGGCATTGCTTGATTTCGTCATTTT CCCGCCCAGATGGCTGGTTGCTGAACACACTTTCCGGCCTCCATATTATCACCGCAACTGCATGAGTGAATTTATGGGTC TCATCCATGGTGGCTATGAGGTGCATTATATCAAAAATTGACTTTTAATCACTGTTTGTTGGAAGCATTATAAGGTTTAC ATTTTTGCTGGTCATTAGGCAAAAATTGTGTCTTCTCTAGCCTGTGCCTAATACATTTGTTTGGCTTCTTTTCAGGCGAA GGTTGATGGGTTTCTTCCGGGCGGTGCAAGTCTTCATAGCTGTATGACTCCCCACGGTCCTGATACGAAGTCATATGAGG TATGGTTTTTCTGAACAATCAAGAACACACTATAAGATCATTCTTGTACCATCTTTGTCTACATCCCTAAATCGAAAACC TTATTAGTTATATGTCATTTGCCGATAGCTTATTTGGATCACCTTCTCTTTTCTTATATTCAATTCTGGCATTCAGAAGC TAAGTTTCCCTCCAGAATTGATTTTCGTTTCAGAATTAATTGTATAAAGATTTCCAAACGTGCATTCAATCTTCTAATAA CCTTTGTATTTGGTGGACAGGCCACCATTGCGCGTGGGAATGATGTAGGACCTAACAAGATCACTGACACGATGGCTTTT ATGTTTGAGTCGTGTTTGATACCTCGCATTAGTCGATGGGCTCTCGAATCACCATTCTTGGACCATGATTATTACCAATG TTGGATTGGCCTGAGATCTCATTTCAATGTTACAGAGATATCTCCTAGAACCCCAACCTTGGATAGTGAAACGGTTGCTG GCGACACAAAATCCAGCTAGACAATGGAAGTCTTGAATTTCGTTGTACATAAGAATCCATCCAATGTAAGCAAAATGTTG TATGTAAAAATCAATAATGTAAAGTAAATAATGAGATTACTTCAAGAAAAAAATATAACGTTATATTAATGTTATATTAG ATGTTGAATAATGAAAGTTGCAATTGTGATTCTTTTTTTGGTGCATCAAAGCTGAAAAGCTAAGAAAGAAAGGCAAAAGA AGGTTAAGGTCTACAAAAGTGAAAGAGGTGTTCGCCTTGTTGCTCCTGCTAGTGCTGGAGAAAGAGGCAAGAGCGGTAGG AGGAGGAGCACTGAACCACAATTTGAGATCGACATTGGCGATGGTCTAAGATGTTAGGACGCGTGCAAGGCGCTGCACGG CAGCTTTGGCAGTCGTGTGGGGCAAAATGATGCCCATTCGTTTTATTGGGTTCATGAGAGGGAAGATTGAAGGTCGAAGG ATTTCTTCTTCATCTCCTCCTTATTGGAATTGTGGTTCGGGGTTGTGTTGTGGGTGGTTAATAGGGAAGAGGTGGTGGTT TAAATGGTTCTTTGCTTCTGGCTTCTGTTAGCAGACTTTATTGAAACCCCTCCTTCCCCTCCTTCTGTTTGAGATATGAG ATTGAGTTGGGCGTGGTTTGAGGGTGAAGAGGTGGGCAGGATTAAGGGTGAAGAGCTTGATGAAAATGAGGATTAGCATG AAGAACATGGTGAAGGTGAAGATGAATGGCCGATGACTAGTAAGAACTTGTTTTTTTATTTGATTTTCTTGTAATAACAT CTCAAAACTCCCAATAGTACTCCATTTAATTCATTGCACTATTTCAAGTCATTCAAATTCAAGTTTCGACTTCTTCAACC CTTTCATAATC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0044000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAACATTCCACCGCCGGCGACGACTTCAACTACCTCTCCGGCTTCGGCAACCACTTCTCCTCCGAGGCCCTCGCCGG AGCTCTCCCGGAGGCCCAGAATAGCCCCCTTATCTGCCCCTATGGCCTCTACGCCGAGCAAATCTCCGGCACCTCATTCA CTTCTCCTCGGAATCTCAACCTCTTCAGTTGGTTTTATCGGGTCAAACCATCGGTGACCCATGAACCGTTCAAGCCTCGG GTTCCTTGTAATGGAAGGATTTTGAGTGAGTTCAACCACTCCAACAGTTCTACTAACCCAACACAGCTTCGATGGAAACC GATGGATTCGCCTGATTCACCCACGGATTTCATTGATGGGTTATCTACGGTTTGTGGTTCTGGTAGCTCCTTCATGCGCC ATGGATATGCTATTCACATGTACACTGCTAACAAATCAATGAACAATTGTGCCTTTTGCAATGCTGATGGTGACTTCTTG ATAGTTCCCCAGCAAGGAAGACTCTTCATAACTACTGAATGTGGAAGATTGAAAGTTTCCCCAGGTGAAATTGCTATGCT ACCCCAAGGTTTTCGTTTTACTGTCGATCTGCCTGATGGTCCATCACGTGGCTATGTTGCTGAAATTTTTGGTACTCATT TTCAACTTCCTGATCTGGGACCAATAGGTGCTAATGGTCTCGCTGCCCCAAGGGATTTCCTTGTTCCTACAGCATGGTTT GAGGATAAATCTTATCCTGGGTACACCATAGTACAGAAGTTTGGTGGTGAACTATTTTCTGCAGTACAAGATTTCTCTCC CTTCAATGTTGTTGCTTGGCGTGGTAATTATGTTCCGTATAAGTATGATCTTAGCAAATTCTGCCCTTACAACACAGTTC TCTTTGATCACAGTGATCCATCAATCAACACTGTGTTGACAGCACCAACTGATAAGCCTGGAGTGGCATTGCTTGATTTC GTCATTTTCCCGCCCAGATGGCTGGTTGCTGAACACACTTTCCGGCCTCCATATTATCACCGCAACTGCATGAGTGAATT TATGGGTCTCATCCATGGTGGCTATGAGGCGAAGGTTGATGGGTTTCTTCCGGGCGGTGCAAGTCTTCATAGCTGTATGA CTCCCCACGGTCCTGATACGAAGTCATATGAGGCCACCATTGCGCGTGGGAATGATGTAGGACCTAACAAGATCACTGAC ACGATGGCTTTTATGTTTGAGTCGTGTTTGATACCTCGCATTAGTCGATGGGCTCTCGAATCACCATTCTTGGACCATGA TTATTACCAATGTTGGATTGGCCTGAGATCTCATTTCAATGTTACAGAGATATCTCCTAGAACCCCAACCTTGGATAGTG AAACGGTTGCTGGCGACACAAAATCCAGCTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0044000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEHSTAGDDFNYLSGFGNHFSSEALAGALPEAQNSPLICPYGLYAEQISGTSFTSPRNLNLFSWFYRVKPSVTHEPFKPR VPCNGRILSEFNHSNSSTNPTQLRWKPMDSPDSPTDFIDGLSTVCGSGSSFMRHGYAIHMYTANKSMNNCAFCNADGDFL IVPQQGRLFITTECGRLKVSPGEIAMLPQGFRFTVDLPDGPSRGYVAEIFGTHFQLPDLGPIGANGLAAPRDFLVPTAWF EDKSYPGYTIVQKFGGELFSAVQDFSPFNVVAWRGNYVPYKYDLSKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDF VIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIHGGYEAKVDGFLPGGASLHSCMTPHGPDTKSYEATIARGNDVGPNKITD TMAFMFESCLIPRISRWALESPFLDHDYYQCWIGLRSHFNVTEISPRTPTLDSETVAGDTKSS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11056:SF0
6 441 436 4.3E-230 –
PANTHER
PTHR11056
6 441 436 4.3E-230
IPR005708
SUPERFAMILY
SSF51182
9 440 432 1.42E-161
IPR011051
TIGRFAM
TIGR01015
10 439 430 7.8E-193
IPR005708
Pfam
PF04209
11 439 429 4.2E-210
IPR005708
Gene3D
G3DSA:2.60.120.10
272 410 139 3.3E-60
IPR014710

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004411
Molecular function Homogentisate 1,2-dioxygenase activity Catalysis of the reaction: homogentisate + O(2) = 4-maleylacetoacetate + H(+).
Subterm of
GO:0006559
Biological process L-phenylalanine catabolic process The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid.
Subterm of
GO:0006570
Biological process Tyrosine metabolic process The chemical reactions and pathways involving tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0044000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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