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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0045200 |
| Transcript ID | LotjaGi3g1v0045200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S20, putative; TAIR: AT3G15190.1 chloroplast 30S ribosomal protein S20; Swiss-Prot: sp|Q9ASV6|RR20_ARATH 30S ribosomal protein S20, chloroplastic; TrEMBL-Plants: tr|I3T346|I3T346_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0045200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4825328..4829989) extracted from Lotus japonicus Gifu genome v1.2.
GTGAATGATTGAACGCCTAAACTGAGTTCAATTACTACGAGCCGCAATTTTAGGTAAACTTTCGACCTTCATCACACTCA GGGGTTAGAAAAAAAAAACTTGAGTCTACAAAGAGTCAAAAGTAGTAACAACATTAAGAAACTAGAAGCCCAACAGACAA GCATGCCAAATAGCAAACATGTCATGTTGAAGGATTTCAGAGACCCCACCATTGCCCCCAAAACCCTTCTCCCACGCCAC CCAACCATGAGCCAAAGAAACCACCCCATGACCATGAGTACAGAAAGCTAACGTGCAATCTGCAACAACGTTGCTCACAG AGCAAAAGATAGAGCTACTATGTTGGGGGTGATAGAAAAACTAGTCTCACGACGACAACTCTTCCTGAGAACAAAAGCCT ATAACCTCAACCAATCTCTGAAAGCAAGAGACATAGCAGCAGTTTCGTGCTCATGGCTGACACTTCCCTCCAAAATCAAG GTCCTTTCTCTAGCTGATTCCTCTTCTTCTTCCTCCATCTCCAATCCTGCTTCTCTGAGTTTCTGCAGAAACATTTCTCA TACTGTCTTCTCACAAAGTACAATTCCTCTCTCTTTCTCTCTTCATGCCCTTTTGATGGTGTTTATCTTGTCTTCCATAT TTTCAGCTGAGGATGTAAACAAACACTAAAAGATTTGATTTTGCTGTAGTATTCAATTGTGGGTATGTGTGTGTTGAGTT TTGTTGCAGGTAGCATGTCATTGAGCTCGGTTGGCGTGGCAGCGTCAAAGGAGAAGGTAGATTCTGTTGTGAAGAGAGGT CGCCAGGCCAAGAATCGCCGCAATAACAACAGAGCCCGCAAATCATTGATAAAAACTCGCACCAAAAAGGTACATTTTTC ACAATTCTCTTCCAATACCTTAGAGTGGAAGACATGATTGTTCTAATTTCTTCCATTGTTGTAGCATTCAAGGTGAAGTA CTATAGCATAATGCAAGCTTTGTCTAGTTATAATAAGACTCATTGGTTAATTAGTGGGTGAGTTAGTGAGTGAGGCATGT TGCCTATAAATAGAGAGTGGCTGAGTATCACCAATTACTCAGCAACCTTTTACTTGTCACACTGTAAATGATGTTATGAT TGCAAGTGCTTCTGTTGAGTGCTCATGATCTTGCTCACAATATAAAATACTCTTGCAAGGCCAACTCAGTTTCTAGTTTG GTATGGTATTTGTTTTCGGATAGAATTTCATGACAGTCATCTAATCAATGGTCTTGCAGGCTTTGGAAGCTTTGGAATCG CTTAAGAATAAAAAAGATGCACAACCAGAAGAAATCCTTCCAATTGAGAAACTAATTAGAGAGGCTTACTCGGTAATCGA TAAGGCAGTGAGAGTGGGCACAATGCACAGGAACACGGGAGAACGTCGAAAGTCTAGGCTTGCCAGAAGTAAGAAGCTTG TGGAGATCCACCATGGCTGGTATACCCCAGGTTCTGAAGGCAGTGTCTGAAGCAATCCCCTTCACTAGTTCACATGGATT AAAAATGAGGTGCTACTGAAGACTTATGCAGATTATTTTCACTTTGTTCAAACATTGTATTTGGTCTTTTTTGGTGTTGG TTCAAATTAGTATACTGTTCAATGTAATCATCATGTTGAGCCTTTGTTTTAAACTGCATCTTCACTGTACTTTTTCCTCA TTGTGGTATATAACTTGATCCTTGTTCTCATGATTGCAGTTGCAGGCATAAGTCACTAGCAACTGTCTCTAACCGCTTAA TAGTTGCAACACTTTCTTGAGCTTGAGAATTTGCTGGTTAAGATTTCTAATTTCTTCACCTATAGCGCCATAGCGAATAA GGCAAGTTTTTCTCTGAGGATAATGCTAGTAGAGTAAAGATAATCAACATAGTAAATTTACATGCTCTTACAAATATTGG CATATAAGTCATTGGGTAATATAATTGAACCCTAACTGTTCTTTTTCCAAGTATTTTTTTTTACCTCAATTTTGGCTCTC AGAACTGCTACACCTTCCATTGAAAACCTCAAGCTAGCAGAGAAAAATGGTCCTTATGTTCTGTGATTGGGCCTCCTTAG TATCCACTGGCCTTTTCAAAACTGCTAACATGTTTGACACTGTCAAGATTGGTGTATAATTGTTTATTATTTACTTATTA TTTACCTTAGTTTACATATTCAACCAAACAAATTTTAAAGAACTGCTTGGTTGACAGTGTAACGTTTTTTTTTACATATT CCTTTCTTAAGCCATCTAAAACAGCTGTAACATGTGCAACTTCAGTCACATGTGATCAAGCAGCAACTAGAGCATCAACA ATCTTCTTGATTTGCAGAAGATATCCAGGTGTTGGGACATCTTTCTATGTTCTTTTCAACTGGTTTTTCAATTTTCAATC TTGGAAATAATTTGAGAAGCAGAGGAAGTTTCAAGACTGAACCACACTGGATAAGAAAAATTACAACCAACCATTTGGTT TAACAAAGAACTCGACATTGATGCCATGAAAGAAACATGGAATCTTACTTCTCCCAAAGTTCATACTTTACTATGCAAAT GTCTTCAATCCCATATTCCTCAGAGGCATATTTCTCTAGAATCCATTCTTGCTTGAAGTGGCTTTGGAGCTTGAATCCTT TCACAGCTGTAAGAACATGATGGTGCCAAAGTAAGAAATTATCCTTATCGATTTACTGAAACTATGTTTGCACAACATCA TGAAGTTTGTTCTAATATATCTAAGGAAGAGGAAATGGAGAACTTTTAATGGACCAGAAAATTCCGAGTTGATGACTTAT ATACGATTGAATTACATGTAACTCTAGCAATAACTTCACAACTGAGTAATAGAATGCACATGCGCAATCTCAACTGCTCT AGCTGACTTCTAATTAGCCTGTTATTTCTACAATATTATAGGAGAATATATTAGAAATATATTTTGAAAAGGATGAATAT TTAAACATGAATCTAAGCATGGTGTAATTACATTTTGCTGCCAAATACACTTTTGTCACATTTGGAAATAAGTGGTCTAT GGTATTTTCTTCAATGCAAACCACAGCTTTCATGCACGTTCGTGAATGGCTATCCACGTTACTGGAAAAACCAATTTTAA CTAAGAAGTTTCTGTGTTGAGTTCTCTTTCAGTTAAACATGATAGAGTTATATATATCTAATTAAATTTAGAGTTTAATT TTGATGCACTATTAGTGTAAAATTTCTTCAAACACAACATTCAATCATTTAATCAAAAACAGTTAAATTATTTTTTATTT TAATTAAATGCTTATTTTCTGATATGATGTTCAATTTTTGGATGTCTGTGTAAAGAAATTATACACTAACAATACATACA AATTATAACCTTGCAGGAGTGTTTTTTTTATTGACATAGCACAATAATATTGGTGGGATAGGAAGTGAGACACCATTTGG AGAAGGAGGATCACAATCATGTTCTGACATGTTCGCTTCCATTAATAAGCATCACCTAACTTTAAGTAAGATACAAGTCA ATATTTAAATGGAAGGAGCATGTAGTACCAAATTAAGACAAGAGGGAGTGAACATTGTGATTAGTGTGAATCCAAGTGAA TCCACGCCATATATGATCAAATGCTCAAAAGGAGCTTAACTTCTTTCACTCGCTCACACACACTACATCAGGGTTATAAA CTATTATTGTACCCGAATGTTAACTCAAGTGGTAAGAGTTAGGAGACATAAGGGTTGAGTGAGATGAAAGGTGTAGGGTC CAGGGTTTGAATCCTGATGAGAGACTAATTTACTAACATTACTAACAACTAACATTTTCCAATAAAAAAACTTTTAAAAT TATTATATATTTAATTATATCCATAATTAAAAATTAGCCGTCTTTTTATAAATTTAGTGCTAATATATTCAGTTTTGATT TATTCACACCAAATTTTCTCTTCAACAATCTTCTTCATTTGATTGATGCCTAGAGGAGATGATTTTTACTGTTGCTGAGC ATTTATTTGAGTACTGGTGCTGCTGTTCTAGAGGGCTGGCTCATACAAACTAAAATGTGTTGTTGCTGTTGGGTGCTTCT ATGAGGATGCTGTTATGGAAATTGTTGTTGATTTTATGTTTGTGGCTTTGCTGATGTGCTTTTTATTGCTGCTGAATATC ATTTAAGGTGCTGGTGCTGTTGGTTCACACAAAACAAATTGGTGTTGCTGCAAATTGCAATTATAAGTTGCGGGTGTGCA AAATGGTGGAGGATCTTATTCTTGTATTTGTTAGCAACAAGTGTTATAGGATATGTGCATACTACCTTGATGTTGGTCAT TTGTATGTAATTTTGGGACCATGATAGCTGCTACTAGATTATAAATTTGTATTCAGATGCAGAATGGCTTTCCCAGGATT GTGTACTTTTTTTCCTTGCTAGGTTTTTTTCCCATTGGGTTTTGCCTAGCAAGGTTTTACTGAGGCTCTTTCTTGGGAAC TATCCATAGTCATTTTGTGGGTTGGTGGTGGGTTTATTTTCTTTAGGGCAGAGTGAAGCTTGGTCGCCTTGTTTCAGGTT CAGCTCGTATTGTACACTGTTTCTTGTCTGCAGTTGCTTTTGGCTCAGACTCCTTATATTAATAATATTCATTACTTTTT CTAAAAAAAAATAATATCTTTC
CDS sequence (LotjaGi3g1v0045200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGACACTTCCCTCCAAAATCAAGGTAGCATGTCATTGAGCTCGGTTGGCGTGGCAGCGTCAAAGGAGAAGGTAGA TTCTGTTGTGAAGAGAGGTCGCCAGGCCAAGAATCGCCGCAATAACAACAGAGCCCGCAAATCATTGATAAAAACTCGCA CCAAAAAGGCTTTGGAAGCTTTGGAATCGCTTAAGAATAAAAAAGATGCACAACCAGAAGAAATCCTTCCAATTGAGAAA CTAATTAGAGAGGCTTACTCGGTAATCGATAAGGCAGTGAGAGTGGGCACAATGCACAGGAACACGGGAGAACGTCGAAA GTCTAGGCTTGCCAGAAGTAAGAAGCTTGTGGAGATCCACCATGGCTGGTATACCCCAGGTTCTGAAGGCAGTGTCTGA
Protein sequence (LotjaGi3g1v0045200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADTSLQNQGSMSLSSVGVAASKEKVDSVVKRGRQAKNRRNNNRARKSLIKTRTKKALEALESLKNKKDAQPEEILPIEK LIREAYSVIDKAVRVGTMHRNTGERRKSRLARSKKLVEIHHGWYTPGSEGSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 18 | 18 | - | – | |
| MobiDBLite | 1 | 51 | 51 | - | – | |
| Hamap | 1 | 116 | 116 | 14.027 | ||
| PANTHER | 15 | 127 | 113 | 8.0E-48 | – | |
| PANTHER | 15 | 127 | 113 | 8.0E-48 | ||
| Gene3D | 20 | 127 | 108 | 1.0E-24 | ||
| SUPERFAMILY | 27 | 129 | 103 | 4.05E-21 | ||
| Pfam | 28 | 112 | 85 | 1.6E-18 | ||
| MobiDBLite | 35 | 51 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi3g1v0045200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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