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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0046300 |
| Transcript ID | LotjaGi3g1v0046300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squamosa promoter-binding-like protein; TAIR: AT1G53160.1 squamosa promoter binding protein-like 4; Swiss-Prot: sp|Q38740|SBP2_ANTMA Squamosa promoter-binding protein 2; TrEMBL-Plants: tr|A0A151RJ48|A0A151RJ48_CAJCA Squamosa promoter-binding protein 2; Found in the gene: LotjaGi3g1v0046300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:4941171..4943010) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTGTACCTTCTTTCTTGCCTTTCTGCTTCCTATAAACTCCCTCTTTCACTTCATTGCTCCCAAAAGGCCAGGTTCTA CCACTTCACTTGCTTCTCCATTATACTCTTCATCATTGTCATCTTCACCTCTTTGTCATACCTCACAATGGAGGCCAGGA GTATTGAGAGGAAGAGAACATTGATGATGGAGAAGGTGAGAAAGAACAAGACAGTTGAAGAAGACATGGAAAATGAAGTA GAAGAGGAAGATGAAACTGGTGGTGGTGATGTTATTTTCACAGAAGAAGAGAAGAAGAAAGGGAGAAGAGGATCAAGTGG TGGTGGAGGGGTTTCTCCACCTTCATGCCAAGCTGAGAGATGTGGTGCTGATTTGACTGATGCAAAGAGATACCATCGCC GCCATAAGGTGTGTGAGTTTCATTCCAAGGCACCAGTTGTGGTGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGT AGCAGGTGTTCATTCCTAATTCATATAGAGCATTTTCTATTAAAGTCAATTTGTGTTGTTTCTACCACTATATAATAAGT TGGTCTTCCTAGTCTATCATCTGTTTTTAGTCCATTTGTTCATGAAACTAATAATTATATTATTATAAGGGAAAAGCTAA CACTAGCACTAACACTTTCAACTGACAAGATGTTTGGATCCACTTTTAAGAGCATGTTTGGATTAGTTTCTGATAATCAA TTTTAACACCTATAAGCTACATACAGAAGATTCTTTCCAGAATTGATTCTGGCTTCATAATTAATTGTAGAAGAGTCTCA AGACATGCATTAAGAAATCCTTCTACAGTTGATTCTAAGACCAAAATCAATTCTAAGAAGAAACTTATGTGAGTAGCTTC GAAGTGCCAATTGATTATAGAGAAGTACAAGTTGATCCAAAGATGCTATAACTCTCCCGGATCACTTCAACCTAAAACTA CTCCTTGTAGCTTCTCCCAAAATTACTTCTTTCTCAAATGTGAAAATTTACCAGTTTTTCTAACACACACTGAGATCATG TCATGTTACAATCTACTCATATAAAAGATATGGTTTGATCTCTACCTCATGCCTATAAACAAGTTCTATACATTTAACAG AAACACTTTTTAAGAGCTTAGACCTTTTCACTTCTCTTTCCATGTTAGTTTTGCTGGGGAGAAGCAAAGTCAAATTTTCC AAGCTTTAAGCTAGTGTTTCCTTCCAATGTTCATTAGAAATTATGATGAGTCTTGTGTTGTGCAGGTTTCATGACCTGGC GGAGTTTGATGAAGCTAAGAGAAGCTGCCGGAGGCGGTTGGCCGGACACAACGAGCGACGCCGGAAAAGCAACCCGGAAG CCAGCAATGAGGGCAGCAAAGGCCATCTTCACCCTAAGGAAACAACACAGTGCAGGATTGCTGATGAGAGGGGAAGAGTT CAGATGAACCTGCCAGGGAGTTCTGGCTATAAGTCATTTAACATCCGATGAAGCCAAAGTGTTCAGCAAGCTCTCTCTCT TCTGTCACTCTCTGGTTTCTTACAAGCCAAGGCATAAAATAAAAGTAAAGACCCCTTTGTATGTTTACTAGAAAAAGAAT CTAATTTGACTCACAAAACTTCCAACATACAAAGGGGGTGTCTTATGAAATGTGAGCTAGTTTCCCTCGAGGTCTGTGTT TACTTGCTAATGAGTGCCTTTTGTTTCTGTTTTCCTTATAAGTACCCTTATTATAAAGTACCCATGGATGCTGCTGTAAC TTTATCTTCGACTGGATTAGAATAAAAAACAATTGCTTCTTTTGGGTATCTATTTATAGATTATAATTTGTTTAGAATTA
CDS sequence (LotjaGi3g1v0046300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCCAGGAGTATTGAGAGGAAGAGAACATTGATGATGGAGAAGGTGAGAAAGAACAAGACAGTTGAAGAAGACAT GGAAAATGAAGTAGAAGAGGAAGATGAAACTGGTGGTGGTGATGTTATTTTCACAGAAGAAGAGAAGAAGAAAGGGAGAA GAGGATCAAGTGGTGGTGGAGGGGTTTCTCCACCTTCATGCCAAGCTGAGAGATGTGGTGCTGATTTGACTGATGCAAAG AGATACCATCGCCGCCATAAGGTGTGTGAGTTTCATTCCAAGGCACCAGTTGTGGTGGTTGCAGGGCTGAGGCAGAGGTT TTGCCAGCAATGTAGCAGGTTTCATGACCTGGCGGAGTTTGATGAAGCTAAGAGAAGCTGCCGGAGGCGGTTGGCCGGAC ACAACGAGCGACGCCGGAAAAGCAACCCGGAAGCCAGCAATGAGGGCAGCAAAGGCCATCTTCACCCTAAGGAAACAACA CAGTGCAGGATTGCTGATGAGAGGGGAAGAGTTCAGATGAACCTGCCAGGGAGTTCTGGCTATAAGTCATTTAACATCCG ATGA
Protein sequence (LotjaGi3g1v0046300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEARSIERKRTLMMEKVRKNKTVEEDMENEVEEEDETGGGDVIFTEEEKKKGRRGSSGGGGVSPPSCQAERCGADLTDAK RYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSNPEASNEGSKGHLHPKETT QCRIADERGRVQMNLPGSSGYKSFNIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 70 | 70 | - | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| Coils | 13 | 34 | 22 | - | – | |
| MobiDBLite | 27 | 41 | 15 | - | – | |
| PANTHER | 48 | 155 | 108 | 2.1E-61 | – | |
| Gene3D | 56 | 128 | 73 | 1.1E-36 | ||
| ProSiteProfiles | 64 | 141 | 78 | 32.778 | ||
| SUPERFAMILY | 65 | 144 | 80 | 5.23E-40 | ||
| Pfam | 67 | 140 | 74 | 7.8E-32 | ||
| MobiDBLite | 131 | 187 | 57 | - | – | |
| MobiDBLite | 137 | 165 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi3g1v0046300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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