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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0049400 |
| Transcript ID | LotjaGi3g1v0049400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Choline transporter-related family protein; TAIR: AT3G15380.1 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q8BY89|CTL2_MOUSE Choline transporter-like protein 2; TrEMBL-Plants: tr|I1KDY6|I1KDY6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0049400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5166154..5171775) extracted from Lotus japonicus Gifu genome v1.2.
CCTTTATTTGTTTCACACTGGTTTTCACTCTCCCCTAGCTAACACAACAACTAGCTTCTCCTCCACCACCACTCTGCTCT ACCCCTTCTTCCTTTTCCTCTTTCTGCATCTCTTCTTCTACCCTCTGAATGCTAAATTGAAGCCAAGTTTGTCACTTGGT GTAGAAACACTTTCAAAATACTATCTTCAAAATGAGGGGTTCTTTAGGTGCAGTAATAGGTGGAAGATACCCATCAAGTG ATGGAGTTACCCAAATGGGTGGAATCATAAGGCATGACAGGAAATGCAGAGACATCATTGTTCTTGTGATCTTTATAGCT TTTTGGATTGCAATGATTGTTAACTCCAGCTTTGGTTTCAACCAAGGAAACCCACTAAGGTAAAATCTTCAAGTTTCCAT CCTTTTTCTAACTTGAGCACTGTGTTATGTAATTAGTGGAATTTCTGCAATTGTTAAGTTATATAGTTTTGATTGAATGT AAATTTTAACTCAATGGAGTTCTTTTATAGGGAAATTGTAATTGATACATTTTTCTTCCTAGTGGTTCATGATTTTCAAC TTTCCTTTTTCTTTTTTCCTTCCTGAGCCTTTGATTAGAATGGTTCATTGAGAATATACAAAAAAGTAAAGAAGATTTTT TTTTTTTTTAGTAAATGGGTGTTCTGTGAACTTTCCCATGCTTCAAATTGCATGAAATCCTGATTTAAACAAGATTTGTA CTATTCAATTTTTTATTTTAGCAAATGTGTGCTTACTGGGCCTATCAACTATCACAATACTTTTTCAACTGGGGATTAAT CTTGTTATTTCTTTGGGTAATGGCTGCTGAGGAACTTAAAGCAGGAAGTGAAACTTGAATGTGTAGAAGCATGAAGCCTG CTACTTTTATTCTCATTTTGTTGTTTTCATTGTGTAATTTGTGATAATTGGCACTATTGCTTATCAGGCTTACTTATGGG CTTGACTACAAAGGGAATGTGTGTGGGGACAAGCATGCGCACCCTGGTCTTCGTAAATTGGAGCTTAGATATTGGCAAAA CCCTAATCAGGTTTATCAGAGTGGATTGAAGGATAGCCAATTTAAGCTTTCTGATGCCCGCAGTATATGCTTATCGGACT GCCCTGTGCCTGCGGATGATTCTCTTAACTGGGTGTGTGATTATCCTGAAGGAGATATTCGTCTTTCGATGGAAGATTGG ATTAAAAGGAACTATGATTATTATGAGTTCCTTACACCAGAAATGAGAAACTCCTCTCTTAAACTTCAGGGCCCATGTTA CCCTGTCATATTTCCGAGTGTAAATGGTGAGCAGACTATTCCATTTTTTATGCATTCATAAATTAATATTTTGCTGTATG TTTGCTAATGGTTATGTGGAGGCATTTCTTTGATTTTTTTTACCTTAGTTACAAGGTATCCTCCTATATATTATGTATCA TCTTTGTAATACCTGTAACTTAAAGCATATTTTTGTCTATAGTTTACTGGAGTTGCCAATTTATTGCTCGAGCATCAAAT GCGTCTCTAAATCACTGGCAGCTGATGGGTGGAGATAACATCAATAAAGACATTCTTATTGATAAGTCCATTCACAAGGC TATTAATTCTCGGTCGGCTGTCTTAAAGGTTAAAATTATTCAGCTTCCTAATTCTTTTATTGGAATTATCATTGTGATTT TGTCCCAAGGAAGCATAATCTCTCAACATCAACATTTTACAGTATTTAGTTGTATATTTGATATGTTGTGGTTAAAGAGA TAAGAAAACAAACGGAATGAAGTGCGGAAATCTGTGCTTAGACCTTACATATTCAGTTTCATATGAATTATGTGCTGTAG AATTACAATGTTTTATGTGTTATATTTGCAGAGGTACATGGCTGACATAGGAAAGGCGTGGCCTGTTCTGATTGTTTGTG GAGGGATTTTACCTCTTTTCCTGTCTGTGATTTGGTTGATGATGATTCGGCATTTTGTCGCTGCAATGCCATGGATAACA GTCGTGCTCTTTAATGTTCTAATGATATCAGTTACAATGTTCTACTATCTAAAAGGTTTGAACCTCTCTTGGGTTATTTA AGTACTTCTTGAATCAAATATTGGTGCTTTTATGGGAATATCATTATAAAGGTATCAAAACAAATTATCTATACTACTCT TCAACTAATGTGTTTTTTCCTATCTCCATCTATTTATTTTATTCTTTGTTCCTTACCTCCTGCATGGATTTTTTTTTGCC CTTTCTTTTCTTTTCCAGTCATTTACAAAATCACTTATGTAATGGATTTTGTGCCAAGACAGGAAAAATTATTGTTAAAC AATGAAGATCTTTTTGTTTTAAATCTTGCAGGAAAAAAGGATCCCTGGGTAAGGCCCAAGATACAGTTGTTCTAAATATG CTTTTGGTAAAAGATATAACTTCCAATCAAAATGAAAGGGGTCCATATATAAAAGAAAATTGTGATGTGTTTCTCATATA AAAATATTGGAGTTTCTAGATGATCTTGAGTTTTATTCTTGGAGATTTATTCTGATGGAAGTTATTGATGTTGATCTTAT CCTTTTCTTCCTATGCAAATGGGCATTGAAAACTAAAAAAAAATACTTAGTTGGTTATTCTAGTTAAAAACTATTCTTAT ATTACTATTGAATTGTTTATTTTAGCCAAATAATATTTTAGCTTTATCTGGATGTTGACAAACATCATTCCAACAATAAT GCCGAGTTAATTTGTCTTCCTAATTTTCAGCTGGATGGATCGGAAATGATGCTATTTCTCCCATCATTGGGGAGCATGAC CCTTATATTAATGTATTCGGGAGAGTAAGTAACATCCTAGTTGAGTTCCCCTTCCCTCTCTCTATTGATGATTTTTGTTT GTACATCTAATGAGACAATTTTACTTTCAGGAGCTGAGTCATCTACGTGTTGTCACTGTACTGATGACCTTTATCACAGT TGTTGCCATTCTTACTTCAATTGCTATTGTTCGACGCATCCTTATGGCAACATCTGTCCTGAAGGCAAGTATCACTACAT GATATGCAATTATCCAACTTCAATTAAACTGTAGAATGTTTCCCCGCATGTAATATCTTTAGTTTGCATATCTGGTTGTT ACAGTGTTAAACAATTTTTTGTCAAAATTGTTGAACATAGTAATGCAATGATAGAACCACTAGTATGTGTGAAATGATAT GCAATTTTTATTTCCTTACACGAGTCATTAATTTAATTAATTTAATGCAAATTTTGTTCACAGGTTGCTGCAAAAGTGAT AGGAGAAGTTCAAGCACTCATTATTTTCCCACTCATACCTTATGGTATCCTTGCTGTGTTTTACATGTTCTGGATTTCAG CTGCTCTCCATTTGTTCAGCTCTGGCCAGATTGTTCAGAATGACTGCAACTCTAACTGTTGCACATATGATCTCATGGCA AAACGGGTGAATTGTGATCGTTGCTGTGGATATAGCATTAAATACACACCTCATATCGGAGTTTCCATCCTTTTCCACTT ATTTGGGGGCTATTGGGCTACACAATTTTTCATAGCATCCTCCTCAACAGTGATTGCTGGATCTGTTGCCTGTTATTACT GGGCTCATGGTGAAACATCGGTGAGTCACAATGCATTGTCCAACATGAATAATGCAATTCAGAGGATTCAGTGAGGGTTT TCTGCAGTCAATATAACTCGAATTTTAATAGATTAAACAACATGTAATCCCAGCCTAAGCAGGGCCATAGTTTTTGGTTT GACTCAGAAAAGTAGTCATGAATCATGATATTATAAATTATCGAAATATTATTCATTCTATCAAAGAACAATATGTGTAA GAATAGGTTTTAACCAGATTCTTAAACTACTTGTTTCAACTTTCAAGGACCATAGTCCATAGGTGAATTTGCAGCTTCAT AATGTTGAAAATCGAATTCAGATCTAACTTGCAAACTGCTGGTGCTTGATTTGAATTCGATCTTCTATTAAGCATTTTGA CTTTGATACACTTAAAATTCTTTTATCCATGTTATTAAATATAATTCATTGTTCTTCTTGCAGCCAGAAGTTCCATTTCT TTCAGTCTTTTCCTCTATGAAGAGACTTATGCGTTACAGTCTTGGATCTGTGGCCCTTGGTTCTCTGATTGTGTCATTTG TAGAATCAATCCGCTTTCTGCTTGAATCTATGCGTCGCAAACTAAAAGTCTCTAGTCATGGGTATGGGAGTTGGATAGGC AATGCTCTATACCAATCATCTCAATGTTTTCTCAGGTGTATTGAGTGGACCATCAAATCAGTAAACCGAAATGCTTACAT CATGGTAAATTTTGTTAATCTACAGTAGCCATCATAAAGCATATTTTTATGCATGCACTAATGGCAAAAGTTTCTTTACA CTTTGAAAATTATTAACTTGTCTAATTTTAACTTCTTGAGCATCTTCTTGGTTCCTGCAGATTGCTATAACGGGCAAAAG TTTCTGCAGTGCTTCTTCTATTGCAACAGAATTGATCATGAATAACATTTTAAAGATAGGGCGCCTTAATGTAATTGGAG ATATCATTTTGTTCCTTGGAAAATTATGTGTAAGCCTCTCGAGCGCGGTGTTTGCGTTCCTCATGTTGGACACACACAAG TACAGTTCAGACCATAACAAGACCTCATCTCCACTCTTTCCTGTTGTGGTATGTTTTCTATAATCTAAAGAGAATGAAAA TGGTAATTCATTATTAAAAGTGTCAGATTATATATCCTTAAAAAGAGGGAAAGTCTTCCATTATGTTTTCTATTTCTGAA CTGCTACCTGAGTGAAACATAACCTTAATGGATATCCTACCTAAAAGGACCAATAAAGGGCAAACCGGGTGCTATAAAGC TCCCGCTATGCGCGAGGTCAAGAGAGGGGCCGGACCCACTTTGTGGATCTAATGCAGGCAAACCTTGCATTTTGCAAGAG ATTGATTTCATAGCTCGAACCTGTATCTGCAAAGTCATCTTAAACTTGACCTCTTACCGCTGCGTCGAGGCTCACCCTCT TACTAAAAGGACCAAGAGAAGGAAAAAATAGTAAAATGAAGTTTACTAATTCACCATTAAACTTGAATTTTGAAATTTTC AGAACCTTATTATATTTTTTTTGTTTAAAATGCAGATGTGCTGGGCTCTTGGATACATTGTTGCAACTCTCTTCTTTGCA GTTGTGGAGATGTCAATTGACACCATCGTTCTCTCATACTGCCAGGATTCTGAAGAACACCAAGGGACAGCTCAATATGC TCCACCCCTTCTCATCGAGACTCTTAGTGACCAAAATGAAATGCAGAGACTTACACAAGGACCCTAATGAGAAGTGTCCC ATGTATAATTTTGGGTGATGTTGGCAAGATTTAGATTTTTGTTTAGGTGCTTATTTTTGCCTCCATAGCTCTGTTATTAC TTCCCCTTGTATATATGTTTATGCACAAACAAGGGTGGGGACTGTAGGGTGTCCTTTTGCCGAATGGGATATGTAGCCAA TTGCCAGGGGCACAAATAGAAACATCTATTACCCTTTTCCTATATAATTATAACTTACTCAAAAGTACTTCTTCTATTGC AGAAACCCACATTTCAAACAAG
CDS sequence (LotjaGi3g1v0049400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGGTTCTTTAGGTGCAGTAATAGGTGGAAGATACCCATCAAGTGATGGAGTTACCCAAATGGGTGGAATCATAAG GCATGACAGGAAATGCAGAGACATCATTGTTCTTGTGATCTTTATAGCTTTTTGGATTGCAATGATTGTTAACTCCAGCT TTGGTTTCAACCAAGGAAACCCACTAAGGCTTACTTATGGGCTTGACTACAAAGGGAATGTGTGTGGGGACAAGCATGCG CACCCTGGTCTTCGTAAATTGGAGCTTAGATATTGGCAAAACCCTAATCAGGTTTATCAGAGTGGATTGAAGGATAGCCA ATTTAAGCTTTCTGATGCCCGCAGTATATGCTTATCGGACTGCCCTGTGCCTGCGGATGATTCTCTTAACTGGGTGTGTG ATTATCCTGAAGGAGATATTCGTCTTTCGATGGAAGATTGGATTAAAAGGAACTATGATTATTATGAGTTCCTTACACCA GAAATGAGAAACTCCTCTCTTAAACTTCAGGGCCCATGTTACCCTGTCATATTTCCGAGTGTAAATGTTTACTGGAGTTG CCAATTTATTGCTCGAGCATCAAATGCGTCTCTAAATCACTGGCAGCTGATGGGTGGAGATAACATCAATAAAGACATTC TTATTGATAAGTCCATTCACAAGGCTATTAATTCTCGGTCGGCTGTCTTAAAGAGGTACATGGCTGACATAGGAAAGGCG TGGCCTGTTCTGATTGTTTGTGGAGGGATTTTACCTCTTTTCCTGTCTGTGATTTGGTTGATGATGATTCGGCATTTTGT CGCTGCAATGCCATGGATAACAGTCGTGCTCTTTAATGTTCTAATGATATCAGTTACAATGTTCTACTATCTAAAAGCTG GATGGATCGGAAATGATGCTATTTCTCCCATCATTGGGGAGCATGACCCTTATATTAATGTATTCGGGAGAGAGCTGAGT CATCTACGTGTTGTCACTGTACTGATGACCTTTATCACAGTTGTTGCCATTCTTACTTCAATTGCTATTGTTCGACGCAT CCTTATGGCAACATCTGTCCTGAAGGTTGCTGCAAAAGTGATAGGAGAAGTTCAAGCACTCATTATTTTCCCACTCATAC CTTATGGTATCCTTGCTGTGTTTTACATGTTCTGGATTTCAGCTGCTCTCCATTTGTTCAGCTCTGGCCAGATTGTTCAG AATGACTGCAACTCTAACTGTTGCACATATGATCTCATGGCAAAACGGGTGAATTGTGATCGTTGCTGTGGATATAGCAT TAAATACACACCTCATATCGGAGTTTCCATCCTTTTCCACTTATTTGGGGGCTATTGGGCTACACAATTTTTCATAGCAT CCTCCTCAACAGTGATTGCTGGATCTGTTGCCTGTTATTACTGGGCTCATGGTGAAACATCGCCAGAAGTTCCATTTCTT TCAGTCTTTTCCTCTATGAAGAGACTTATGCGTTACAGTCTTGGATCTGTGGCCCTTGGTTCTCTGATTGTGTCATTTGT AGAATCAATCCGCTTTCTGCTTGAATCTATGCGTCGCAAACTAAAAGTCTCTAGTCATGGGTATGGGAGTTGGATAGGCA ATGCTCTATACCAATCATCTCAATGTTTTCTCAGGTGTATTGAGTGGACCATCAAATCAGTAAACCGAAATGCTTACATC ATGATTGCTATAACGGGCAAAAGTTTCTGCAGTGCTTCTTCTATTGCAACAGAATTGATCATGAATAACATTTTAAAGAT AGGGCGCCTTAATGTAATTGGAGATATCATTTTGTTCCTTGGAAAATTATGTGTAAGCCTCTCGAGCGCGGTGTTTGCGT TCCTCATGTTGGACACACACAAGTACAGTTCAGACCATAACAAGACCTCATCTCCACTCTTTCCTGTTGTGATGTGCTGG GCTCTTGGATACATTGTTGCAACTCTCTTCTTTGCAGTTGTGGAGATGTCAATTGACACCATCGTTCTCTCATACTGCCA GGATTCTGAAGAACACCAAGGGACAGCTCAATATGCTCCACCCCTTCTCATCGAGACTCTTAGTGACCAAAATGAAATGC AGAGACTTACACAAGGACCCTAA
Protein sequence (LotjaGi3g1v0049400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRGSLGAVIGGRYPSSDGVTQMGGIIRHDRKCRDIIVLVIFIAFWIAMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDKHA HPGLRKLELRYWQNPNQVYQSGLKDSQFKLSDARSICLSDCPVPADDSLNWVCDYPEGDIRLSMEDWIKRNYDYYEFLTP EMRNSSLKLQGPCYPVIFPSVNVYWSCQFIARASNASLNHWQLMGGDNINKDILIDKSIHKAINSRSAVLKRYMADIGKA WPVLIVCGGILPLFLSVIWLMMIRHFVAAMPWITVVLFNVLMISVTMFYYLKAGWIGNDAISPIIGEHDPYINVFGRELS HLRVVTVLMTFITVVAILTSIAIVRRILMATSVLKVAAKVIGEVQALIIFPLIPYGILAVFYMFWISAALHLFSSGQIVQ NDCNSNCCTYDLMAKRVNCDRCCGYSIKYTPHIGVSILFHLFGGYWATQFFIASSSTVIAGSVACYYWAHGETSPEVPFL SVFSSMKRLMRYSLGSVALGSLIVSFVESIRFLLESMRRKLKVSSHGYGSWIGNALYQSSQCFLRCIEWTIKSVNRNAYI MIAITGKSFCSASSIATELIMNNILKIGRLNVIGDIILFLGKLCVSLSSAVFAFLMLDTHKYSSDHNKTSSPLFPVVMCW ALGYIVATLFFAVVEMSIDTIVLSYCQDSEEHQGTAQYAPPLLIETLSDQNEMQRLTQGP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 34 | 34 | - | – | |
| PANTHER | 9 | 692 | 684 | 0.0 | ||
| PANTHER | 9 | 692 | 684 | 0.0 | – | |
| TMHMM | 35 | 57 | 23 | - | – | |
| Phobius | 35 | 56 | 22 | - | – | |
| Phobius | 57 | 239 | 183 | - | – | |
| Phobius | 240 | 263 | 24 | - | – | |
| TMHMM | 240 | 262 | 23 | - | – | |
| Phobius | 264 | 268 | 5 | - | – | |
| TMHMM | 269 | 291 | 23 | - | – | |
| Phobius | 269 | 291 | 23 | - | – | |
| Phobius | 292 | 323 | 32 | - | – | |
| TMHMM | 322 | 344 | 23 | - | – | |
| Phobius | 324 | 344 | 21 | - | – | |
| Pfam | 328 | 670 | 343 | 1.2E-80 | ||
| Phobius | 345 | 363 | 19 | - | – | |
| TMHMM | 364 | 386 | 23 | - | – | |
| Phobius | 364 | 385 | 22 | - | – | |
| Phobius | 386 | 449 | 64 | - | – | |
| Phobius | 450 | 469 | 20 | - | – | |
| Phobius | 470 | 488 | 19 | - | – | |
| Phobius | 489 | 514 | 26 | - | – | |
| TMHMM | 492 | 514 | 23 | - | – | |
| Phobius | 515 | 595 | 81 | - | – | |
| Phobius | 596 | 617 | 22 | - | – | |
| TMHMM | 596 | 617 | 22 | - | – | |
| Phobius | 618 | 632 | 15 | - | – | |
| TMHMM | 632 | 654 | 23 | - | – | |
| Phobius | 633 | 654 | 22 | - | – | |
| Phobius | 655 | 700 | 46 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0049400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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