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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0049600 |
| Transcript ID | LotjaGi3g1v0049600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Stem-specific protein TSJT1; TAIR: AT4G27450.1 aluminum induced protein with YGL and LRDR motifs; Swiss-Prot: sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1; TrEMBL-Plants: tr|I3STI1|I3STI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0049600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5184999..5186490) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGGCCATTTTTCACAAGGCTTTTGCTCATCCACCTGATGAGCTAAACAGTCCTGCATCCTACAAGGGTGCCAAGAA GCCTAAGGTTCCTGAGGAAACTCTAAGAGAGTTTCTATCCCATCATCCTGATAACACTTTTTCAATGAGTTTTGGTGAGG CTGCTGTTCTTGCTTATGTTCGCCCTGAGCGACATTTCTCCTTTCGTCCAAGGTGATTTTCATGTTTAGAAATCTTTCTA CAATTAATTCTAAAAAAAAAAATTAATTCTGGAGAGAAGCTTATTCGAACAGCTTCTAAGTATGCTGAGATTGTTGACTA TGAAGAAAAATAACATGCTATAATTATATAGTTACTTGTTCATTTCTTATATGAAAAATTGTGAAGGAAGTTAACAAAGT TGTTGTGTTCTTTTGGTTTTTCAGGCTGTTTTGTGCAATTGATGACATTTATTGTCTCTTTCTGGGGACCTTGAACAACC TGTGTTCACTCAATAAGCAATATGGTTTGACAAAGGGTACTGATGAAGCCATGTTTGTGATTGAAGCTTATAAGACGCTT CGCGACCGCGGTCCTTACCCTGCAGATCAAGTTGTCAAGGGTCTTGATGGAAGCTTTGCCTTTGTTGTCTATGACAGCAA GGTTGGCACTGTCTTTGCAGCTCTGGTAAGATAATTAAGTGCATGTTTCGAAATCCTTCTAACTAAATGTAGCTTCTGTG TTTCAAAATTGATTAAAGAACGAGAAGTTGATTTACTAGATATCAATCATGTTCATTTTGACATTGTCCAACATCTAGCA TTCTTATATCAACACAATCAATGTGTGATTTTTTTCCCACATATTGTTTAGTTTTCAAGTGGCTCTATTTCAATGTAAAA ATTGGTTTCAGGGTTCTGATGGTGGAGTGAAGCTATATTGGGGTATTGCAGCTGATGGATCTGTGGTAATCTCTGATGAT TTAGATGTTATAAAAGAGGGTTGTGCCAAATCCTTTGCTCCCTTTCCAACAGGTACCATTTGAACCACTATTAATTAGTC TTGTTAATTCATGGCACATCAGCTCATAGGTTACGATGAATTTAAAATGAGCTTTATAATAACATTATGGACTGCATATT TGAAAATCCTTTAATAATTGATTTTAAACTCAATCAATTCTGGTGAGTAACTTCTATTAATAGCTAGTTTCAGTTGAGAC ATATGTTTCATTGGGCAGATAGAAAAGGAACTATATGATTTCAATCTTTAATAGTATAGATCTATGCTAAGATCCATGAC AAGTTTGGTGTTGCAATGCAGGGTGTATGTTTCACAGTGAAGGAGGTTTGATGAGCTTTGAGCATCCAATGAACAAGTTG AAGGCAATGCCAAGGGTAGATAGTGAAGGGGTCATGTGTGGAGCTAACTTCAAGGTTGATAAGTATACAAGGGTCAATAG CATACCTCGAGTGGGAAGTCAAGCCAATTGGATGGAATGGGAACAGCATTAG
CDS sequence (LotjaGi3g1v0049600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGCCATTTTTCACAAGGCTTTTGCTCATCCACCTGATGAGCTAAACAGTCCTGCATCCTACAAGGGTGCCAAGAA GCCTAAGGTTCCTGAGGAAACTCTAAGAGAGTTTCTATCCCATCATCCTGATAACACTTTTTCAATGAGTTTTGGTGAGG CTGCTGTTCTTGCTTATGTTCGCCCTGAGCGACATTTCTCCTTTCGTCCAAGGCTGTTTTGTGCAATTGATGACATTTAT TGTCTCTTTCTGGGGACCTTGAACAACCTGTGTTCACTCAATAAGCAATATGGTTTGACAAAGGGTACTGATGAAGCCAT GTTTGTGATTGAAGCTTATAAGACGCTTCGCGACCGCGGTCCTTACCCTGCAGATCAAGTTGTCAAGGGTCTTGATGGAA GCTTTGCCTTTGTTGTCTATGACAGCAAGGTTGGCACTGGTTCTGATGGTGGAGTGAAGCTATATTGGGGTATTGCAGCT GATGGATCTGTGGTAATCTCTGATGATTTAGATGTTATAAAAGAGGGTTGTGCCAAATCCTTTGCTCCCTTTCCAACAGG GTGTATGTTTCACAGTGAAGGAGGTTTGATGAGCTTTGAGCATCCAATGAACAAGTTGAAGGCAATGCCAAGGGTAGATA GTGAAGGGGTCATGTGTGGAGCTAACTTCAAGGTTGATAAGTATACAAGGGTCAATAGCATACCTCGAGTGGGAAGTCAA GCCAATTGGATGGAATGGGAACAGCATTAG
Protein sequence (LotjaGi3g1v0049600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLAIFHKAFAHPPDELNSPASYKGAKKPKVPEETLREFLSHHPDNTFSMSFGEAAVLAYVRPERHFSFRPRLFCAIDDIY CLFLGTLNNLCSLNKQYGLTKGTDEAMFVIEAYKTLRDRGPYPADQVVKGLDGSFAFVVYDSKVGTGSDGGVKLYWGIAA DGSVVISDDLDVIKEGCAKSFAPFPTGCMFHSEGGLMSFEHPMNKLKAMPRVDSEGVMCGANFKVDKYTRVNSIPRVGSQ ANWMEWEQH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 247 | 247 | 1.1E-128 | – | |
| PANTHER | 1 | 247 | 247 | 1.1E-128 | – | |
| CDD | 2 | 225 | 224 | 3.89762E-138 | – | |
| SMART | 2 | 225 | 224 | 2.2E-151 | ||
| Pfam | 2 | 225 | 224 | 3.1E-106 | ||
| SUPERFAMILY | 76 | 193 | 118 | 1.47E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0049600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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