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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0055400 |
| Transcript ID | LotjaGi3g1v0055400.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Repetitive proline-rich cell wall protein; TAIR: AT3G22142.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q40375|PRP2_MEDTR Repetitive proline-rich cell wall protein 2; TrEMBL-Plants: tr|A0A1J7I059|A0A1J7I059_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0055400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5789232..5791322) extracted from Lotus japonicus Gifu genome v1.2.
GGAATATTTGTTTAAATTGATTAAACTTCAGTAGTTGTGCATGAAAGCTGTAAAACACGTCAAGGAGATACATAAGATGT CGGTAGTTTGAAAAGTATTTGCATAATGCAGATCTTGTCTAGTTTCACACATAATTTCCAACTTGACTACCATATGTGGA CAAAATGAGTTATACCAGTGCTGAAAACCCCACACCTACTATTGACTTTGTATACATGATTTGGGTACCAAATCTTCATA TTGGAACCTGCTCCTTACCTATCAGTCGAGTCACTAAGTTAAGGGCCCCTCCTGAGTAGTATAAAAGGTGATCATGCTGG TGTGTTTTACTCCAACTCAAATGAGTGACATGGCTACCTTACGCTCTCTAGTGCTGCTCCTTGTAGCTCTGGCTCTCACC CCTCAAGGGTTTGCCAACTATGAGAAACCCCCTGAGTATACTCCTCCTATTTACAAGCCCCCAGTTGAGAAACCACCCGT CTACAAACCCCCGGTCGAAAAGCCACCGGTGTACAAGCCCCCAGTGGAGAAACCACCAGTGTACAAACCCCCAGTAGAGA AGCCTCCAGTGTACAAACCTCCTGTTGAGAAACCCCCAGTGTACAAGCCCCCAGTTGAGAAGCCCCCAGTTTACAAACCT CCGGTAGAGAAGCCACCAGTGTACAAACCCCCGGTTGAGAAGCCCCCAGTTTACAAACCTCCGGTGGAGAAGCCACCAGT GTACAAGCCCCCAGTTGAGAAACCCCCAGTTTACAAGCCCCCGGTAGAGAAGCCCCCAGTTTACAAGCCCCCAGTTGAGA AACCACCAGTGTACAAGCCCCCAGTAGAGAAGCCACCGGTGTACAAGCCTCCAGTTGAGAAGCCACCCGTGTACAAGCCC CCAGTTGAGAAGCCACCTGTTTACAAACCTCCGGTGGAGAAGCCACCAGTGTACAAGCCCCCAGTTGAGAAACCCCCAGT TTACAAGCCCCCGGCGGAGAAGCCCCCAGTTTACAAGCCCCCGGTTTACAAGCCACCGGTGTACAAGCCCCCAGTTGAGA AGCCACCAGTGTACAAGCCCCCAGTTGAGAAGCCACCTGTGTACAAGCCCCCAGTTGAGAAGCCACCAGTTTACAAGCCC CCAGTTGAAAAGCCACCAGTTTACAAGCCACCAGTTGAGAAGCCACCAGTGTACAAGCCCCCCGTAGAGAAGCCACCAGT TTACAAGCCTCCAGTTGAGAAGCCACCGGTTTACAAGCCCCCAGTTTACAAGCCACCGGTGTACAAGCCCCCAGTTTACA AGCCACCAGTGTACAAGCCCCCAGTAGAGAAGCCACCGGTTTATAAGCCCCCAGTTGAGAAACCTCCAGTTTACAAGCCT CCAGTTGAGAAGCCACCAGTTTACAAGCCTCCAGTTGAGAAGCCACCAATTTACAAGCCCCCAGTTGAGAAGCCGCCAGT TTACAAACCACCAGTAGAGAAGCCACCAGTATACAAGCCTCCTGTTGAGAATCCTCCATATGGGAAGCCACCATATGGTG GTCACCCAGGGTACCCTCCTGCAGGAAACACTCATTTCTAAAACGCATAGCTTCTATATTCAGTTTCTGCTAAATAAGAG TTGAGTTAGCCTTGATACGGTCAATAATGCAGTTTACATGTGCTGGCAATGATTACTTTTGGCTACTCATTTCAAACCTT TATTTACAATGCTATGGCCAAGAAAAGATTGTATGAATGTAAAATGGAAAAACAGAATTTGGTGCTTTGATTGTACTCCA AATTATGAATGAAAGAATTTTATGATTTTGTACATTGTGGAAGTTCATTATATTTGTGTTTGGATATCAAATCCACTCAA TATTAACAAATTCTCATTACAATATACACCTTTTGTATCAAAGTGAGCAAAATGAGTGCACAAATTAGACATCTGTTTGT ACGAATAGCAACATGCTTATTGTCAATATGTATTTAAACCTAGCATATATCTTGAGACTAAATGCCTCCAAATGATAGTT CAGAGGTAAGAGCTGGAGATATATGAGTTGGGGAAGAAAAGGTCCAGGGATCAATTATTGGAGAGTGCAATTTATCTTTA TGATATTTTGA
CDS sequence (LotjaGi3g1v0055400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGTGTGTTTTACTCCAACTCAAATGAGTGACATGGCTACCTTACGCTCTCTAGTGCTGCTCCTTGTAGCTCTGGC TCTCACCCCTCAAGGGTTTGCCAACTATGAGAAACCCCCTGAGTATACTCCTCCTATTTACAAGCCCCCAGTTGAGAAAC CACCCGTCTACAAACCCCCGGTCGAAAAGCCACCGGTGTACAAGCCCCCAGTGGAGAAACCACCAGTGTACAAACCCCCA GTAGAGAAGCCTCCAGTGTACAAACCTCCTGTTGAGAAACCCCCAGTGTACAAGCCCCCAGTTGAGAAGCCCCCAGTTTA CAAACCTCCGGTAGAGAAGCCACCAGTGTACAAACCCCCGGTTGAGAAGCCCCCAGTTTACAAACCTCCGGTGGAGAAGC CACCAGTGTACAAGCCCCCAGTTGAGAAACCCCCAGTTTACAAGCCCCCGGTAGAGAAGCCCCCAGTTTACAAGCCCCCA GTTGAGAAACCACCAGTGTACAAGCCCCCAGTAGAGAAGCCACCGGTGTACAAGCCTCCAGTTGAGAAGCCACCCGTGTA CAAGCCCCCAGTTGAGAAGCCACCTGTTTACAAACCTCCGGTGGAGAAGCCACCAGTGTACAAGCCCCCAGTTGAGAAAC CCCCAGTTTACAAGCCCCCGGCGGAGAAGCCCCCAGTTTACAAGCCCCCGGTTTACAAGCCACCGGTGTACAAGCCCCCA GTTGAGAAGCCACCAGTGTACAAGCCCCCAGTTGAGAAGCCACCTGTGTACAAGCCCCCAGTTGAGAAGCCACCAGTTTA CAAGCCCCCAGTTGAAAAGCCACCAGTTTACAAGCCACCAGTTGAGAAGCCACCAGTGTACAAGCCCCCCGTAGAGAAGC CACCAGTTTACAAGCCTCCAGTTGAGAAGCCACCGGTTTACAAGCCCCCAGTTTACAAGCCACCGGTGTACAAGCCCCCA GTTTACAAGCCACCAGTGTACAAGCCCCCAGTAGAGAAGCCACCGGTTTATAAGCCCCCAGTTGAGAAACCTCCATTTAC AAGCCTCCAGTTGAGAAGCCACCAATTTACAAGCCCCCAGTTGAGAAGCCGCCAGTTTACAAACCACCAGTAG
Protein sequence (LotjaGi3g1v0055400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVCFTPTQMSDMATLRSLVLLLVALALTPQGFANYEKPPEYTPPIYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPP VEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPP VEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPAEKPPVYKPPVYKPPVYKPP VEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVYKPPVYKPP VYKPPVYKPPVEKPPVYKPPVEKPPFTSLQLRSHQFTSPQLRSRQFTNHQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 36 | 36 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| SignalP_EUK | 1 | 34 | 34 | - | – | |
| Phobius | 1 | 34 | 34 | - | – | |
| PANTHER | 13 | 150 | 138 | 2.1E-84 | – | |
| Phobius | 18 | 29 | 12 | - | – | |
| Phobius | 30 | 34 | 5 | - | – | |
| Phobius | 35 | 370 | 336 | - | – | |
| Pfam | 44 | 53 | 10 | 0.16 | ||
| Pfam | 54 | 63 | 10 | 0.17 | ||
| MobiDBLite | 64 | 229 | 166 | - | – | |
| Pfam | 64 | 73 | 10 | 0.17 | ||
| Pfam | 74 | 83 | 10 | 0.17 | ||
| Pfam | 84 | 93 | 10 | 0.17 | ||
| Pfam | 94 | 103 | 10 | 0.17 | ||
| Pfam | 104 | 113 | 10 | 0.17 | ||
| PANTHER | 114 | 251 | 138 | 2.1E-84 | – | |
| Pfam | 114 | 123 | 10 | 0.17 | ||
| Pfam | 124 | 133 | 10 | 0.17 | ||
| Pfam | 134 | 143 | 10 | 0.17 | ||
| Pfam | 144 | 153 | 10 | 0.17 | ||
| Pfam | 154 | 163 | 10 | 0.17 | ||
| PRINTS | 158 | 179 | 22 | 1.5E-5 | ||
| Pfam | 164 | 173 | 10 | 0.17 | ||
| Pfam | 174 | 183 | 10 | 0.17 | ||
| Pfam | 184 | 193 | 10 | 0.17 | ||
| Pfam | 194 | 203 | 10 | 0.17 | ||
| Pfam | 204 | 213 | 10 | 0.17 | ||
| PANTHER | 213 | 347 | 135 | 2.1E-84 | – | |
| Pfam | 214 | 223 | 10 | 0.63 | ||
| PRINTS | 217 | 234 | 18 | 1.5E-5 | ||
| Pfam | 224 | 233 | 10 | 0.58 | ||
| Pfam | 234 | 243 | 10 | 0.17 | ||
| PRINTS | 243 | 262 | 20 | 1.5E-5 | ||
| Pfam | 244 | 253 | 10 | 0.17 | ||
| MobiDBLite | 246 | 315 | 70 | - | – | |
| Pfam | 254 | 263 | 10 | 0.17 | ||
| Pfam | 264 | 273 | 10 | 0.17 | ||
| Pfam | 274 | 283 | 10 | 0.17 | ||
| Pfam | 284 | 293 | 10 | 0.17 | ||
| Pfam | 294 | 303 | 10 | 0.17 | ||
| Pfam | 304 | 313 | 10 | 0.58 | ||
| Pfam | 314 | 323 | 10 | 0.58 | ||
| Pfam | 324 | 333 | 10 | 0.17 | ||
| Pfam | 334 | 343 | 10 | 0.17 | ||
| MobiDBLite | 338 | 370 | 33 | - | – | |
| MobiDBLite | 348 | 370 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of cell wall | The action of a molecule that contributes to the structural integrity of a cell wall. | ||
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
Expression pattern of LotjaGi3g1v0055400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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