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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0055400 |
| Transcript ID | LotjaGi3g1v0055400.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Repetitive proline-rich cell wall protein; TAIR: AT3G22142.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q40375|PRP2_MEDTR Repetitive proline-rich cell wall protein 2; TrEMBL-Plants: tr|A0A1J7I059|A0A1J7I059_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0055400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5789258..5791455) extracted from Lotus japonicus Gifu genome v1.2.
AGCTAGTTCATGCAGATCCATAGATGGACCTTAGTTTCTAACAATGTATATACAAAAGTTAAATTAATCCGATCCTCAAC TTGGTGGGCCAAAATCTGCCTTTCATGAAGATAGGATCGAATAACAAACGGTAGGAATATTTGTTTAAATTGATTAAACT TCAGTAGTTGTGCATGAAAGCTGTAAAACACGTCAAGGAGATACATAAGATGTCGGTAGTTTGAAAAGTATTTGCATAAT GCAGATCTTGTCTAGTTTCACACATAATTTCCAACTTGACTACCATATGTGGACAAAATGAGTTATACCAGTGCTGAAAA CCCCACACCTACTATTGACTTTGTATACATGATTTGGGTACCAAATCTTCATATTGGAACCTGCTCCTTACCTATCAGTC GAGTCACTAAGTTAAGGGCCCCTCCTGAGTAGTATAAAAGGTGATCATGCTGGTGTGTTTTACTCCAACTCAAATGAGTG ACATGGCTACCTTACGCTCTCTAGTGCTGCTCCTTGTAGCTCTGGCTCTCACCCCTCAAGGGTTTGCCAACTATGAGAAA CCCCCTGAGTATACTCCTCCTATTTACAAGCCCCCAGTTGAGAAACCACCCGTCTACAAACCCCCGGTCGAAAAGCCACC GGTGTACAAGCCCCCAGTGGAGAAACCACCAGTGTACAAACCCCCAGTAGAGAAGCCTCCAGTGTACAAACCTCCTGTTG AGAAACCCCCAGTGTACAAGCCCCCAGTTGAGAAGCCCCCAGTTTACAAACCTCCGGTAGAGAAGCCACCAGTGTACAAA CCCCCGGTTGAGAAGCCCCCAGTTTACAAACCTCCGGTGGAGAAGCCACCAGTGTACAAGCCCCCAGTTGAGAAACCCCC AGTTTACAAGCCCCCGGTAGAGAAGCCCCCAGTTTACAAGCCCCCAGTTGAGAAACCACCAGTGTACAAGCCCCCAGTAG AGAAGCCACCGGTGTACAAGCCTCCAGTTGAGAAGCCACCCGTGTACAAGCCCCCAGTTGAGAAGCCACCTGTTTACAAA CCTCCGGTGGAGAAGCCACCAGTGTACAAGCCCCCAGTTGAGAAACCCCCAGTTTACAAGCCCCCGGCGGAGAAGCCCCC AGTTTACAAGCCCCCGGTTTACAAGCCACCGGTGTACAAGCCCCCAGTTGAGAAGCCACCAGTGTACAAGCCCCCAGTTG AGAAGCCACCTGTGTACAAGCCCCCAGTTGAGAAGCCACCAGTTTACAAGCCCCCAGTTGAAAAGCCACCAGTTTACAAG CCACCAGTTGAGAAGCCACCAGTGTACAAGCCCCCCGTAGAGAAGCCACCAGTTTACAAGCCTCCAGTTGAGAAGCCACC GGTTTACAAGCCCCCAGTTTACAAGCCACCGGTGTACAAGCCCCCAGTTTACAAGCCACCAGTGTACAAGCCCCCAGTAG AGAAGCCACCGGTTTATAAGCCCCCAGTTGAGAAACCTCCAGTTTACAAGCCTCCAGTTGAGAAGCCACCAGTTTACAAG CCTCCAGTTGAGAAGCCACCAATTTACAAGCCCCCAGTTGAGAAGCCGCCAGTTTACAAACCACCAGTAGAGAAGCCACC AGTATACAAGCCTCCTGTTGAGAATCCTCCATATGGGAAGCCACCATATGGTGGTCACCCAGGGTACCCTCCTGCAGGAA ACACTCATTTCTAAAACGCATAGCTTCTATATTCAGTTTCTGCTAAATAAGAGTTGAGTTAGCCTTGATACGGTCAATAA TGCAGTTTACATGTGCTGGCAATGATTACTTTTGGCTACTCATTTCAAACCTTTATTTACAATGCTATGGCCAAGAAAAG ATTGTATGAATGTAAAATGGAAAAACAGAATTTGGTGCTTTGATTGTACTCCAAATTATGAATGAAAGAATTTTATGATT TTGTACATTGTGGAAGTTCATTATATTTGTGTTTGGATATCAAATCCACTCAATATTAACAAATTCTCATTACAATATAC ACCTTTTGTATCAAAGTGAGCAAAATGAGTGCACAAATTAGACATCTGTTTGTACGAATAGCAACATGCTTATTGTCAAT ATGTATTTAAACCTAGCATATATCTTGAGACTAAATGCCTCCAAATGATAGTTCAGAGGTAAGAGCTGGAGATATATGAG TTGGGGAAGAAAAGGTCCAGGGATCAATTATTGGAGAG
CDS sequence (LotjaGi3g1v0055400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGGTGTGTTTTACTCCAACTCAAATGAGTGACATGGCTACCTTACGCTCTCTAGTGCTGCTCCTTGTAGCTCTGGC TCTCACCCCTCAAGGGTTTGCCAACTATGAGAAACCCCCTGAGTATACTCCTCCTATTTACAAGCCCCCAGTTGAGAAAC CACCCGTCTACAAACCCCCGGTCGAAAAGCCACCGGTGTACAAGCCCCCAGTGGAGAAACCACCAGTGTACAAACCCCCA GTAGAGAAGCCTCCAGTGTACAAACCTCCTGTTGAGAAACCCCCAGTGTACAAGCCCCCAGTTGAGAAGCCCCCAGTTTA CAAACCTCCGGTAGAGAAGCCACCAGTGTACAAACCCCCGGTTGAGAAGCCCCCAGTTTACAAACCTCCGGTGGAGAAGC CACCAGTGTACAAGCCCCCAGTTGAGAAACCCCCAGTTTACAAGCCCCCGGTAGAGAAGCCCCCAGTTTACAAGCCCCCA GTTGAGAAACCACCAGTGTACAAGCCCCCAGTAGAGAAGCCACCGGTGTACAAGCCTCCAGTTGAGAAGCCACCCGTGTA CAAGCCCCCAGTTGAGAAGCCACCTGTTTACAAACCTCCGGTGGAGAAGCCACCAGTGTACAAGCCCCCAGTTGAGAAAC CCCCACCCCCAGTTTACAAGCCCCCGGTTTACAAGCCACCGGTGTACAAGCCCCCAGTTGAGAAGCCACCAGTGTACAAG CCCCCAGTTGAGAAGCCACCTGTGTACAAGCCCCCAGTTGAGAAGCCACCAGTTTACAAGCCCCCAGTTGAAAAGCCACC AGTTTACAAGCCACCAGTTGAGAAGCCACCAGTGTACAAGCCCCCCGTAGAGAAGCCACCAGTTTACAAGCCTCCAGTTG AGAAGCCACCGGTTTACAAGCCCCCAGTTTACAAGCCACCGGTGTACAAGCCCCCAGTTTACAAGCCACCAGTGTACAAG CCCCCAGTAGAGAAGCCACCGGTTTATAAGCCCCCAGTTGAGAAACCTCCAGTTTACAAGCCTCCAGTTGAGAAGCCACC AGTTTACAAGCCTCCAGTTGAGAAGCCACCAATTTACAAGCCCCCAGTTGAGAAGCCGCCAGTTTACAAACCACCAGTAG AGAAGCCACCAGTATACAAGCCTCCTGTTGAGAATCCTCCATATGGGAAGCCACCATATGGTGGTCACCCAGGGTACCCT CCTGCAGGAAACACTCATTTCTAA
Protein sequence (LotjaGi3g1v0055400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVCFTPTQMSDMATLRSLVLLLVALALTPQGFANYEKPPEYTPPIYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPP VEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPP VEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPPPVYKPPVYKPPVYKPPVEKPPVYK PPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVYKPPVYKPPVYKPPVYK PPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPIYKPPVEKPPVYKPPVEKPPVYKPPVENPPYGKPPYGGHPGYP PAGNTHF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 34 | 34 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 36 | 36 | - | – | |
| SignalP_EUK | 1 | 34 | 34 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| PANTHER | 13 | 150 | 138 | 5.9E-93 | – | |
| Phobius | 18 | 29 | 12 | - | – | |
| Phobius | 30 | 34 | 5 | - | – | |
| Phobius | 35 | 407 | 373 | - | – | |
| Pfam | 44 | 53 | 10 | 0.18 | ||
| Pfam | 54 | 63 | 10 | 0.19 | ||
| Pfam | 64 | 73 | 10 | 0.19 | ||
| MobiDBLite | 64 | 89 | 26 | - | – | |
| Pfam | 74 | 83 | 10 | 0.19 | ||
| Pfam | 84 | 93 | 10 | 0.19 | ||
| Pfam | 94 | 103 | 10 | 0.19 | ||
| Pfam | 104 | 113 | 10 | 0.19 | ||
| PANTHER | 113 | 223 | 111 | 5.9E-93 | – | |
| Pfam | 114 | 123 | 10 | 0.19 | ||
| Pfam | 124 | 133 | 10 | 0.19 | ||
| MobiDBLite | 132 | 218 | 87 | - | – | |
| Pfam | 134 | 143 | 10 | 0.19 | ||
| Pfam | 144 | 153 | 10 | 0.19 | ||
| Pfam | 154 | 163 | 10 | 0.19 | ||
| Pfam | 164 | 173 | 10 | 0.19 | ||
| Pfam | 174 | 183 | 10 | 0.19 | ||
| Pfam | 184 | 193 | 10 | 0.19 | ||
| Pfam | 194 | 203 | 10 | 0.19 | ||
| PANTHER | 195 | 312 | 118 | 5.9E-93 | – | |
| Pfam | 204 | 213 | 10 | 0.19 | ||
| Pfam | 216 | 225 | 10 | 0.65 | ||
| PRINTS | 220 | 241 | 22 | 2.4E-5 | ||
| Pfam | 226 | 235 | 10 | 0.19 | ||
| Pfam | 236 | 245 | 10 | 0.19 | ||
| MobiDBLite | 239 | 307 | 69 | - | – | |
| Pfam | 246 | 255 | 10 | 0.19 | ||
| Pfam | 256 | 265 | 10 | 0.19 | ||
| PRINTS | 259 | 276 | 18 | 2.4E-5 | ||
| Pfam | 266 | 275 | 10 | 0.19 | ||
| Pfam | 276 | 285 | 10 | 0.19 | ||
| Pfam | 286 | 295 | 10 | 0.19 | ||
| PANTHER | 295 | 398 | 104 | 5.9E-93 | – | |
| Pfam | 296 | 305 | 10 | 0.65 | ||
| Pfam | 306 | 315 | 10 | 0.65 | ||
| PRINTS | 315 | 334 | 20 | 2.4E-5 | ||
| Pfam | 316 | 325 | 10 | 0.19 | ||
| Pfam | 326 | 335 | 10 | 0.19 | ||
| MobiDBLite | 329 | 398 | 70 | - | – | |
| MobiDBLite | 329 | 407 | 79 | - | – | |
| Pfam | 336 | 345 | 10 | 0.19 | ||
| Pfam | 346 | 355 | 10 | 0.19 | ||
| Pfam | 356 | 365 | 10 | 0.18 | ||
| Pfam | 366 | 375 | 10 | 0.19 | ||
| Pfam | 376 | 385 | 10 | 0.053 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of cell wall | The action of a molecule that contributes to the structural integrity of a cell wall. | ||
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. |
Expression pattern of LotjaGi3g1v0055400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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