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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0055700 |
| Transcript ID | LotjaGi3g1v0055700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rho gtpase-activating protein; TAIR: AT5G61530.1 small G protein family protein / RhoGAP family protein; Swiss-Prot: sp|Q3E875|RGAPX_ARATH Uncharacterized Rho GTPase-activating protein At5g61530; TrEMBL-Plants: tr|I1LVH2|I1LVH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0055700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5853864..5861156) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGACAAAAGGAGTGCCGTTATAGTCAGGTTGTAATTAGTTGAACCTAGGACTTGGTCAGAGCAGTCCCATTCTCATT CCCAATCCATATCTATGTGCTGCCGTCGTTTTTGAAAGCACACACTTCCAAAGTTCTCATCTTTCACAGAACCGAAGGTG AATTTTATATTTTTTATATCAGATTCTCTCTATTTTTTCCCAGAACATAGAGGATTTTTCAATAAAATATGGGTTTGTGT TATTTTCTTTTCCTTTTCATTAGATTGTGTCTTCTTTAATTTTTAATTCTGACTATAAAGTTTTAATTTTTCGTTTCTTT TGTTTCTGGGTTTTGTCCAGAATTGGATTTTGCTCTTTATTGCAGAAACTGTTGTGGGTGTGATTCTTTTTTAGCTAGTT TTGAGCTTGACCATGTTTTATGTAGAAATATAGAAGAAATTCTTATGGGTTTGATTCATGATTTTCAAGAAATTTATGAT TTTCCCTGATGACAAGCATCAAAGGCTGTGATTAGTCTTAAAAAGAATTAATTGGATTCTGTGTTTTAAGAGTTTTTGAT TGTATTCATGTCTAGAATTTTGTCAATTACTGTTGTTGACTTTTCTTTTATGATCCACTTCTATGCAGGATAGAGAGTGT TAACTGATTTTATTATTACATTCTGGTTCAATGCCTTCTATCACTTCACCTCAGTGGCAAGAGAAGGCTAGTGGTTTCTT TTCTTCCTCAGGTATCCCTCATTGAATCTGGTCACCTTTGTTTTTTGTTGTTCAGACTTCAGACAATGTTCTCTGATTGT TGAAAGATAATTTAAATGTAGGGGTGAAGCTTAAAGAAGCTAGGGAATCAGCGGGGACATTTGTTGGCGAGGTCACAAAG GATACGAAGAGTAATGTTGCTGAAGTGGCGGGACGAGTTGGATCGATTGTTAAAAGTCGGTGGACACTTCTTCAGCAGCC GTCCACAAGACATGCAGTACAGGATAAGTTGATATCAGCTGCTGCTACTACAGGTTCATTCCTAAGGAGAGGCATCTCAG GGACAAAAGAAAAGGTTGTTGTGGGGAAGTCCAAGGTTGAAGAGGTAATGTCATTTGAGTAAATGATTGGGATTGTGATG TGTAACTTCGCATTAAGGCATAAATGCATAATGACTAGGTTTAATTGCTTTTTAGCATTTTGTTTGCAAAATTTGAAAAC TGGTGGAAACAAAAAGAAAACTATATGGTATTTTTGTAAATATCAGTGAAAAATATGTCAACTTAAAATGAAATAAAAAG CAAACTAAGTACCTTATAATGGGGATTTTATTTTATTATTACCTACCTTCAGTACTTTACTTTGGTGTAAGCAAAATCTC TCTTCGGATTACATAATTCTGTCAATTGGATGTGGATAACTTTTGTCTTGGTTATAGATAGGATTGGTTTAAGGCTGCTA TGCTGGACATCGTACTAATCAAATGGATGTTTAAATTTTTCTCCATCTTGTCTTTCTTGCTTCTCTCTTTCCTTCTTCCT ATGACATTATTCACTTGATATACAGCAAGTTATCATTCACAATGCATTTTTTATGTGCCAATTTGACGCTGATTCTCTAC TTTCTTCTCTTTTTTTATTTGGCATCATGGTCATTTATTTCAGGTGGCAAAAATAACAGCACAAAAAAGTAAGACTATCT TGACAGACATTGAAAGATGGCAGAAGGTAAATAAACTCAGTCTAACTGTGGCACGTGTTTTCTAGTATACATCATTCTCA AATAGACAAATACCCTTACATTAATTTTCTCTTGCAGGGAGTTGCGAAGAATGATGGTAAATTTCTCAAGCTACATAACT GAGCAAGTGATCAGTTCTTTTCATGCATCATAATCTTTTGTTGACTATGTAGAACTAGTTCCATAGCATCTTGGAATGCA TTCCATTTTGACGCCTTTACCATAACACTTTTGATTACTGAAGTGTGAAGCTAGCAGTATAGCAGAATTTGTTTTCTTTA TAGATTTTTACTATATTTAAGAATTGTTGCCAGTCTGTATTATGGTAGTTAATTAGTCATCAACTTGACCCCAGTATTTG GAGTTCCTATTGAGGTTACTGTACAGAGGCAAGATTGCAGCAAGCCTATTCCTCAAATATTGGTCAACTGTGCAGATTAT CTTATTGTTTCAGGTAGCTGTTTCTAGAGTAAGGCTATACATCCATACATCGGTCTATTTTCTTTTGTTGTTTCTTTTTG TTGGAAGTTTTATTTCATACAATTGTAATTTCATTATTGCAATTTTATGTAGGATTGAACTCACCACATCTCTTCAAATC TGAAGGGGATAAAAAGGTTATTCAGCAGTTGGTTTCCCTATACAACCAAGGTATTTTCAATCTTCTTTCTGTAATGGGAG GGTTATATTATGATATTTGGATGGTGTTGTTTTTATTGGCTTCTGTAATGTTACAGATTCAACTGCTTCAGTGCCAGAAG GCACAAATCCTGTTGATGTAGCAGCTCTCACAAAATATTATCTTGCTAGCCTCCCTGAGCCGCTTACCACTTTGGAGCTT TATAATGAGATCAAAGGTGCTCGATCCAATATATATTCCATGAGAAACATACTGAAGAGGCTTTCAAGTGTTAACTACAT GACTCTGGAGTTTATAACAGCCCTTTTGCTCCGTGTTAGCCAGAAGTCACTTCTTAATAAGGTAGGATAATTCTGTAGGT TGGCATGCATATATTTGTTTGGTGGAAGCGGGGATGGGTATTAGGTTTCATATACAGAGTGAGGGCTTATGTTTATATAC TGTTCATTAAAATATGTATGGTGGAAATTTGTGGTTCATTTATGTTTATTATGCGATATATATTTTCTCTCCTATAAATA TGTCAGGTAATATACTTGCTTTGCTATGTAAAAGCGTATTGGTTAAGAGCATAAGAGGAGTACCATCCCTGCATGGTTGT ATTGTGTAATTGTAAAGATTGACTCTTCTCACTTCTCAAGTTTTTACTTGATGCACCCTCTATAAATATAGGGTACTAGG ATGATCATAAGAAGTCACACTCCCAAATGACGTGTGTTGGAGATATAGATTTTAACCTTCTTCTTTTTTGAATTTAAGTT GTCTTTTTTGAAGTTATTTAAAAATTAAATGAAAATTTTATAAAAAAACTTGTGTCGTACAGGTATCGTGTCTTATTCAA GTGTCTAAGTTGGGTCGGTTAAGTATCCTTGAGGTGTCTGCTAATTGTCCAATTGTTAAAAATTAAATTTAGTTGGAATC CTGATGAGGAATGTATGACACTTTTCATGAGTATCATACAGGAGCGTATTGGTTAAGACTTAAGAGCATAAGAGGAGTAC CATCCATGCATGGTTGTATTATAAAGACTAACTCCTCTCACTTCTCAAGTTTTTACTTGATGCACCCTCTCTCTGTATAT ATAGGGTACAAAGATGATCAGAAGAAGAAACATTCCCAAATGAAGTGTGTAGGACACCTAGGTTTTAACCCTTTTTTTTA ATTGAAGTTGACTTTTTTTGAAGTTATTTTAAGATCGAATGAAAATTTTCCAAAAAAATTGTGTCGTTCAAGTGTCATTG TCTTACTCGAGTGTCGGATAAGTGTCTAAACTGTGTCGGTTAAGTATCCTTGAAGTGTTGGCTAATTGTCCGAGTTGATA AAAATTTAATCAAGTCGGAATCCTGATGAGGTATGTCTGAAACTGTTCATACGAATGTCGTAATGGTTCGGAAAGGTGTC CAACACAACACCTCAAATAGAGTAAGTTCCCATGCTGCGCAGGGAGGGGATGCACATGTAAGCGAGTGAAAAGAGGAGAT TGGAGTGAGGGGAGGAGATTATTTATGGATTTTAGAATACTAAAGCTTTTTAGCTGGGGCAGTGTCCAAAATCTCTCTGA GGAGATTATCTATTTCCATTAAATAATACATATACCCATGGTTCTCTGTTGCTGGCCTCTGCCAGATATCTAGGATGCCT AGTTTTGGCTCTTTAGCTGTGCTATAGGGAGAGGAAGCAGTGCAATGCTATTTGGGAGTGTGCCTAATCAGCGTATATAT AATGTATTTGGCTAGAGCAAAATTCCAGTGTTTTCAATTAATGTATTTTGTCCCCTTATTTTTTATGATAGCATTAAGCA GTGCCTTACCAAGAAAATAGGATTCTGTTTACAAGGTGCATACACGGCGGAGTAAATGATATGGGGGTTAGTTTGTTAAA AGTCTGTTACAGGGGAAGTTAAGGGGTTAGGGATTAAATAAGAGGAACTGTACACTCATAAACTTGTAAGGCATTAGGGA ATAATCAATAGTAACTGAGCGCCTCAGTTGTAATAGGCAGCCCTTGTAAGGTGGTTTTTCCTCCTTGTTCTCTCTCTGTA GCAGAGATAACAGGGTTCATTTTTTTCTCTCATTTTATTTTCTTCTTTCATTCCTAACAGTTTCCTAGCTTATTCTTGGC ATTTGGCTGATGATTGTAAACTTGTATGTGAGGGGTTTCATTGTTTGATTTCGAGAGATCTAAGTCTCTAACAAGTTTAT CTAGCTTGATTCTTTCATGTTTTCGTACTTCTTGAAGGATTTGTTGTGGTTAATTACTTGTGTTTTCCTCCCCTTCTAAT TTATTTTATCTCATGGTAATATTGCTATTTTCCAAATTGCTCAACTTGCTTGCTTTATTCTTAATTAGCAGCCTTCTTCA TTCCCTGCAGGATGATCATCATCATGTTTTACTATTTTTGGTTGCTCATCAGTTGGTTGCATAAGAACAATCACACAGCT TTTACTTGTTTTAGTTTTGATTATGGTTCATTACTTGTGTTTTGCTCGTTAGTGTACTCAAGATTGCTGACTTTCTTCAG ATGGATGCTCGGAGCCTTGCAATGGAAATGGCACCTGTTATTATGTGGCAAATGGGACGGACACCTGAACATTATCGTCA ATATTGGAATCAGATGTCAAAAAGCCCTTCTAAAACGACCTTGGATCCACCACCTGGCTCATCCACTGCCTCGTACACGC TTTCTGGTAAGCAAATGATGCCAAAACATGTTAATTTTGGATGATAATTAAACTGACAGAAAATACTATTTATTAGTGGC TTTGCCCAATAGGATGATGACAAGGTAGGAATTTGCATGTAATAGTCATCTTTAGTCTCTAGTAATTTGGTTTTAGTCTA AGCTTTTTGCCCCCTTTGAGACATCACTAAATAAATTTTAAAACATAACAAAAAATGATTTGAAGTACCAAATATCTTAT CTAGATGTCATGACATGCCTAATGTTACTCTTCATATCCATCCCATTTAAAAATGATCTACATAGTTTCATAACTTCATT CATCTTTCATCTCAAATTACTATAAATTTATAATCTAACAAACTACGAACTATCTTTGTTCACTTAAGTATGATTAATAT ATATATCTATAATCAATTGTATTTCTGATAAATAAGTTTGTATGATGTTTTCATTAGTATATAGGAAATTAAATGTATAA GTAGGAGTGGTAGTTTGGTCTAGATTGGATTCAGTTCCCAAAAATAAAATCCAAAAGCCTTCAATTAAACAAAATTCAGT TTTAATGGTTTCCACTTTCCAGTTTGTTGGTTCGGTTTCTCTCTTTTTCTTTTGGATTGGTTTTTATTGGATTAGATTGG TTTATAAATAGGTCTAATGACATCATTTAATCCTTGTAATCAAACCCAAATGGTGGAAATGGCTTTTGTTGTCTTTGTTG TAAGCATGTACGTATAAGTGATAATACTCATTGCTGAAACTTCAAAAGCAGAAACAAAAAAAAAGGGGGCCCTACTGCTT AAATAATAAAATTCTAAAGTGATATCAGTGAAGTGCCGAACTTTTTAAAAGGGCTTTGAAGCAACCTTACTCCACTGAAC TGTTTAAAGGGCTTTGAGCTGTTCAACGTATTCTTGTAAGAATAATCACCTGAGTTGAAATGCATTCAGGACTCAGGAGT GTGGGTTCTGTTTTCTTGTAGTTTTATGACAGTGGGTAGTAAAATCAATATTATGGATGCAAGTAAAAATTTATTGATTT TAGCCTCTTCTTGGGAGTTGGGATCTTCTTTTTGACGAGTGCAGCTGAATATTTTAAAATCTGGTTGAAACTTGTACTTT TAAGTTGTGTATCTTTGTTATCAACGTTGCATTCTACTCACATGTCACTTGCAAAATATTTAGGAAGGATGCAGAAGTTA GTTTGACAAGAGATTGTTTTACTTGAACTTGAACTAAACTTGGTCTGCAGAAACTAATGCACAGAGCAAATAACTAGTGC TGATTGGAGATAACCATTTCTTTTCTTTTCTTGTTTCTTGTGCTGCAGATGATAGTGAAGTCATAGATGCATCCTCTCCT ATTCCTTTGGATGATGGCATGCCAGTTGACTTTGATGCGATTGAGGTTGTTCAGTTGCTTATAGAACATCATAATGCAGT TTTCACTGATGCAAATGAGACAGTTTGGAAATAAATTGCTTTACTCCTGATCCTGTGTTGAATTGTTTTGGACTTGGAAT AACTTCCTCCAATCTGGCCGTGAAGATCATATATTGCAGCTATCTTTGATGTTATGGACAACATCACGCTGTGAAAGATG TTGGAAACTGGTCCTGTTTTCGTGATAAGGGTATCTGATTTTTGAACTCTTCTGGGTTTAGGGATTGGCCCTATAACTTT ATATTTTTTTTGTACAGCCATTATCTGTAGCTTGCAGAAATTCTCATCACTATTGTGTTGTTTTATTGTGGTGTTTCGCT TGATTAATCATATGTGGCTCTGTTCATAGTTAACATGTGATGTTTGTATAAAGGTAATTTGGTGCTCCTACTAGTGTAAT GCATTATTAACATTTAAATCTTGTCTTGTCCCTGATTGTAAAGAATGTCGGGATAGGGCGTGGAGAAAAGTAAGCTTGAT TTGAAGAGCAGCTATGGATTTTTTTTAGAAAAGCTTGGATAGTTATTGTTTATTAGATTAGGACCTGGAATCCATAGTGT AGTTATAATATTGAGAATAAAATGTGAAGATTCTTAAGACTGTTCCATGTCCTGAGTAATTAATGAGGTTCGCTAATAGC TTTCATTGGCTATTTGTTTTAAGAACATTGCTATATCTCACAAGCAGAGAGACGCACACTACTGACACTAGCATTGACAT GTTAAATTCTGTTCAATTAATAACGAGTCATGTCTGTTGTAATTATAATAAATTAGAAAATTAATAAGCCCAAAACCCAA GCTGGTTGTGCGA
CDS sequence (LotjaGi3g1v0055700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTCTATCACTTCACCTCAGTGGCAAGAGAAGGCTAGTGGTTTCTTTTCTTCCTCAGGGGTGAAGCTTAAAGAAGC TAGGGAATCAGCGGGGACATTTGTTGGCGAGGTCACAAAGGATACGAAGAGTAATGTTGCTGAAGTGGCGGGACGAGTTG GATCGATTGTTAAAAGTCGGTGGACACTTCTTCAGCAGCCGTCCACAAGACATGCAGTACAGGATAAGTTGATATCAGCT GCTGCTACTACAGGTTCATTCCTAAGGAGAGGCATCTCAGGGACAAAAGAAAAGGTTGTTGTGGGGAAGTCCAAGGTTGA AGAGGTGGCAAAAATAACAGCACAAAAAAGTAAGACTATCTTGACAGACATTGAAAGATGGCAGAAGGGAGTTGCGAAGA ATGATGTATTTGGAGTTCCTATTGAGGTTACTGTACAGAGGCAAGATTGCAGCAAGCCTATTCCTCAAATATTGGTCAAC TGTGCAGATTATCTTATTGTTTCAGGATTGAACTCACCACATCTCTTCAAATCTGAAGGGGATAAAAAGGTTATTCAGCA GTTGGTTTCCCTATACAACCAAGATTCAACTGCTTCAGTGCCAGAAGGCACAAATCCTGTTGATGTAGCAGCTCTCACAA AATATTATCTTGCTAGCCTCCCTGAGCCGCTTACCACTTTGGAGCTTTATAATGAGATCAAAGGTGCTCGATCCAATATA TATTCCATGAGAAACATACTGAAGAGGCTTTCAAGTGTTAACTACATGACTCTGGAGTTTATAACAGCCCTTTTGCTCCG TGTTAGCCAGAAGTCACTTCTTAATAAGATGGATGCTCGGAGCCTTGCAATGGAAATGGCACCTGTTATTATGTGGCAAA TGGGACGGACACCTGAACATTATCGTCAATATTGGAATCAGATGTCAAAAAGCCCTTCTAAAACGACCTTGGATCCACCA CCTGGCTCATCCACTGCCTCGTACACGCTTTCTGATGATAGTGAAGTCATAGATGCATCCTCTCCTATTCCTTTGGATGA TGGCATGCCAGTTGACTTTGATGCGATTGAGGTTGTTCAGTTGCTTATAGAACATCATAATGCAGTTTTCACTGATGCAA ATGAGACAGTTTGGAAATAA
Protein sequence (LotjaGi3g1v0055700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSITSPQWQEKASGFFSSSGVKLKEARESAGTFVGEVTKDTKSNVAEVAGRVGSIVKSRWTLLQQPSTRHAVQDKLISA AATTGSFLRRGISGTKEKVVVGKSKVEEVAKITAQKSKTILTDIERWQKGVAKNDVFGVPIEVTVQRQDCSKPIPQILVN CADYLIVSGLNSPHLFKSEGDKKVIQQLVSLYNQDSTASVPEGTNPVDVAALTKYYLASLPEPLTTLELYNEIKGARSNI YSMRNILKRLSSVNYMTLEFITALLLRVSQKSLLNKMDARSLAMEMAPVIMWQMGRTPEHYRQYWNQMSKSPSKTTLDPP PGSSTASYTLSDDSEVIDASSPIPLDDGMPVDFDAIEVVQLLIEHHNAVFTDANETVWK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 379 | 379 | 1.0E-200 | – | |
| SUPERFAMILY | 133 | 370 | 238 | 2.35E-37 | ||
| ProSiteProfiles | 139 | 370 | 232 | 28.103 | ||
| SMART | 152 | 367 | 216 | 6.1E-25 | ||
| CDD | 155 | 292 | 138 | 2.31114E-34 | – | |
| Pfam | 155 | 293 | 139 | 1.7E-27 | ||
| MobiDBLite | 310 | 331 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi3g1v0055700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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