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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR008936
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We have found 44 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.648s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0002119.1
n.a. PREDICTED: rho GTPase-activating protein gacA-like isoform X2 [Cicer arietinum] gi|502145805|ref|XP_004506186.1| chr0 669520 676725 -
2 domain predictions
1 GO term
Lj0g3v0002119.2
n.a. PREDICTED: rho GTPase-activating protein gacA-like isoform X2 [Cicer arietinum] gi|502145805|ref|XP_004506186.1| chr0 669520 677708 -
2 domain predictions
1 GO term
Lj0g3v0002119.3
n.a. PREDICTED: rho GTPase-activating protein gacA-like isoform X2 [Cicer arietinum] gi|502145805|ref|XP_004506186.1| chr0 669520 677708 -
2 domain predictions
1 GO term
Lj0g3v0174019.1
n.a. rac GTPase activating protein 3 [Lotus japonicus] gi|3695063|gb|AAC62626.1| chr0 83860819 83865800 -
2 domain predictions
1 GO term
Lj0g3v0174029.1
n.a. rac GTPase activating protein 3 [Lotus japonicus] gi|3695063|gb|AAC62626.1| chr0 83862388 83865499 -
2 domain predictions
1 GO term
Lj0g3v0334489.1
n.a. Rac GTPase activating protein, partial [Medicago truncatula] gi|357514407|ref|XP_003627492.1| chr0 175089412 175093593 -
2 domain predictions
1 GO term
Lj1g3v1582540.1
n.a. PREDICTED: uro-adherence factor A-like isoform X1 [Cicer arietinum] gi|502133026|ref|XP_004501625.1| chr1 19010335 19012229 +
2 domain predictions
1 GO term
Lj1g3v1582550.1
n.a. Rho GTPase-activating protein [Medicago truncatula] gi|357465311|ref|XP_003602937.1| chr1 19012611 19014999 +
2 domain predictions
1 GO term
Lj1g3v4717450.1
n.a. rac GTPase activating protein 1 [Lotus japonicus] gi|3695059|gb|AAC62624.1| chr1 56306625 56310783 -
2 domain predictions
1 GO term
Lj1g3v4717460.1
n.a. n.a. chr1 56306699 56310919 -
2 domain predictions
1 GO term
Lj1g3v4764220.1
n.a. rac GTPase activating protein 3 [Lotus japonicus] gi|3695063|gb|AAC62626.1| chr1 57304079 57307181 +
2 domain predictions
1 GO term
Lj1g3v4764230.1
n.a. rac GTPase activating protein 3 [Lotus japonicus] gi|3695063|gb|AAC62626.1| chr1 57304380 57307491 +
2 domain predictions
1 GO term
Lj1g3v5060420.1
n.a. rac GTPase activating protein 2 [Lotus japonicus] gi|3695061|gb|AAC62625.1| chr1 61802787 61806720 +
2 domain predictions
1 GO term
Lj1g3v5060430.1
n.a. rac GTPase activating protein 2 [Lotus japonicus] gi|3695061|gb|AAC62625.1| chr1 61803376 61806901 +
2 domain predictions
1 GO term
Lj2g3v3022930.1
n.a. PREDICTED: platelet binding protein GspB-like isoform X1 [Cicer arietinum] gi|502098400|ref|XP_004491226.1| chr2 39102194 39115034 +
2 domain predictions
1 GO term
Lj2g3v3022930.2
n.a. PREDICTED: platelet binding protein GspB-like isoform X2 [Cicer arietinum] gi|502098404|ref|XP_004491227.1| chr2 39102194 39113823 +
2 domain predictions
1 GO term
Lj3g3v1182350.1
n.a. PREDICTED: rho GTPase-activating protein 24-like [Cicer arietinum] gi|502083538|ref|XP_004487490.1| chr3 15783696 15789109 +
2 domain predictions
1 GO term
Lj3g3v1182350.2
n.a. PREDICTED: rho GTPase-activating protein 24-like [Cicer arietinum] gi|502083538|ref|XP_004487490.1| chr3 15784729 15790162 +
2 domain predictions
1 GO term
Lj3g3v2993420.1
n.a. PREDICTED: rho GTPase-activating protein 24-like [Cicer arietinum] gi|502083538|ref|XP_004487490.1| chr3 37054384 37058983 -
2 domain predictions
1 GO term
Lj5g3v1681410.1
n.a. PREDICTED: rho GTPase-activating protein 19-like [Cicer arietinum] gi|502117904|ref|XP_004496003.1| chr5 23858063 23862230 -
2 domain predictions
1 GO term
LotjaGi1g1v0050600.1
n.a. Rho GTPase-activating protein; TAIR: AT5G19390.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|A0A1J7HR12|A0A1J7HR12_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050600 LjG1.1_chr1 7221625 7235220 -
3 domain predictions
1 GO term
LotjaGi1g1v0050600.2
n.a. Rho GTPase-activating protein; TAIR: AT5G19390.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|A0A1J7HR12|A0A1J7HR12_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050600 LjG1.1_chr1 7222791 7233711 -
3 domain predictions
1 GO term
LotjaGi1g1v0050600.3
n.a. Rho GTPase-activating protein; TAIR: AT5G19390.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|A0A1J7HR12|A0A1J7HR12_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050600 LjG1.1_chr1 7222791 7233711 -
3 domain predictions
1 GO term
LotjaGi1g1v0050600.4
n.a. Rho GTPase-activating protein; TAIR: AT5G19390.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|A0A1J7HR12|A0A1J7HR12_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050600 LjG1.1_chr1 7222791 7233768 -
3 domain predictions
1 GO term
LotjaGi1g1v0050600.5
n.a. Rho GTPase-activating protein; TAIR: AT5G19390.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|Q8RWQ4|RGAP7_ARATH Rho GTPase-activating protein 7; TrEMBL-Plants: tr|A0A1J7HR12|A0A1J7HR12_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0050600 LjG1.1_chr1 7222791 7233768 -
3 domain predictions
1 GO term
LotjaGi1g1v0348300.1
n.a. Rho GTPase-activating protein; TAIR: AT4G24580.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|F4JQZ3|REN1_ARATH Rho GTPase-activating protein REN1; TrEMBL-Plants: tr|K7KU55|K7KU55_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0348300 LjG1.1_chr1 81706471 81715769 -
3 domain predictions
1 GO term
LotjaGi1g1v0348300.2
n.a. Rho GTPase-activating protein; TAIR: AT4G24580.1 Rho GTPase activation protein (RhoGAP) with PH domain-containing protein; Swiss-Prot: sp|F4JQZ3|REN1_ARATH Rho GTPase-activating protein REN1; TrEMBL-Plants: tr|K7KU56|K7KU56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0348300 LjG1.1_chr1 81706534 81715886 -
3 domain predictions
1 GO term
LotjaGi1g1v0394400_LC.1
n.a. Rho GTPase-activating protein; TAIR: AT3G11490.1 rac GTPase activating protein; Swiss-Prot: sp|Q9CAX8|RGAP4_ARATH Rho GTPase-activating protein 4; TrEMBL-Plants: tr|W9QUM2|W9QUM2_9ROSA Rho GTPase-activating protein gacA; Found in the gene: LotjaGi1g1v0394400_LC LjG1.1_chr1 87895402 87899462 +
3 domain predictions
1 GO term
LotjaGi1g1v0394400_LC.2
n.a. Rho GTPase-activating protein; TAIR: AT5G22400.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q9FMR1|RGAP1_ARATH Rho GTPase-activating protein 1; TrEMBL-Plants: tr|W9QUM2|W9QUM2_9ROSA Rho GTPase-activating protein gacA; Found in the gene: LotjaGi1g1v0394400_LC LjG1.1_chr1 87895413 87899136 +
3 domain predictions
1 GO term
LotjaGi1g1v0394400_LC.3
n.a. Rho GTPase-activating protein; TAIR: AT3G11490.1 rac GTPase activating protein; Swiss-Prot: sp|Q9CAX8|RGAP4_ARATH Rho GTPase-activating protein 4; TrEMBL-Plants: tr|W9QUM2|W9QUM2_9ROSA Rho GTPase-activating protein gacA; Found in the gene: LotjaGi1g1v0394400_LC LjG1.1_chr1 87895425 87899084 +
3 domain predictions
1 GO term
LotjaGi1g1v0675100.1
n.a. Rho GTPase-activating protein; TAIR: AT5G22400.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q9FMR1|RGAP1_ARATH Rho GTPase-activating protein 1; TrEMBL-Plants: tr|O82458|O82458_LOTJA Rac GTPase activating protein 1; Found in the gene: LotjaGi1g1v0675100 LjG1.1_chr1 124226569 124231210 +
3 domain predictions
1 GO term
LotjaGi1g1v0743900.1
n.a. Rho GTPase-activating protein; TAIR: AT4G03100.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|F4JI46|RGAP2_ARATH Rho GTPase-activating protein 2; TrEMBL-Plants: tr|O82460|O82460_LOTJA Rac GTPase activating protein 3; Found in the gene: LotjaGi1g1v0743900 LjG1.1_chr1 131749147 131752806 +
3 domain predictions
1 GO term
LotjaGi1g1v0795800.1
n.a. Rho GTPase-activating protein; TAIR: AT2G46710.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q8GYY5|RGAP3_ARATH Rho GTPase-activating protein 3; TrEMBL-Plants: tr|O82459|O82459_LOTJA Rac GTPase activating protein 2; Found in the gene: LotjaGi1g1v0795800 LjG1.1_chr1 136659116 136664323 +
3 domain predictions
1 GO term
LotjaGi3g1v0055700.1
n.a. Rho gtpase-activating protein; TAIR: AT5G61530.1 small G protein family protein / RhoGAP family protein; Swiss-Prot: sp|Q3E875|RGAPX_ARATH Uncharacterized Rho GTPase-activating protein At5g61530; TrEMBL-Plants: tr|I1LVH2|I1LVH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0055700 LjG1.1_chr3 5853864 5861156 -
2 domain predictions
1 GO term
LotjaGi3g1v0055700.2
n.a. Rho gtpase-activating protein; TAIR: AT5G61530.1 small G protein family protein / RhoGAP family protein; Swiss-Prot: sp|Q3E875|RGAPX_ARATH Uncharacterized Rho GTPase-activating protein At5g61530; TrEMBL-Plants: tr|I1LVH2|I1LVH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0055700 LjG1.1_chr3 5854643 5860486 -
2 domain predictions
1 GO term
LotjaGi3g1v0055700.3
n.a. Rho gtpase-activating protein; TAIR: AT5G61530.1 small G protein family protein / RhoGAP family protein; Swiss-Prot: sp|Q3E875|RGAPX_ARATH Uncharacterized Rho GTPase-activating protein At5g61530; TrEMBL-Plants: tr|I1LVH2|I1LVH2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0055700 LjG1.1_chr3 5854643 5860486 -
2 domain predictions
1 GO term
LotjaGi3g1v0177500.1
n.a. Rho GTPase-activating protein; TAIR: AT5G22400.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q9FMR1|RGAP1_ARATH Rho GTPase-activating protein 1; TrEMBL-Plants: tr|G7ITU3|G7ITU3_MEDTR PAK-box/P21-Rho-binding domain Rho GTPase activating protein; Found in the gene: LotjaGi3g1v0177500 LjG1.1_chr3 24658931 24665968 +
3 domain predictions
1 GO term
LotjaGi3g1v0177500.2
n.a. Rho GTPase-activating protein; TAIR: AT5G22400.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q9FMR1|RGAP1_ARATH Rho GTPase-activating protein 1; TrEMBL-Plants: tr|G7ITU3|G7ITU3_MEDTR PAK-box/P21-Rho-binding domain Rho GTPase activating protein; Found in the gene: LotjaGi3g1v0177500 LjG1.1_chr3 24658963 24664590 +
3 domain predictions
1 GO term
LotjaGi3g1v0401300.1
n.a. Rho GTPase-activating protein; TAIR: AT2G46710.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q8GYY5|RGAP3_ARATH Rho GTPase-activating protein 3; TrEMBL-Plants: tr|G7L9Z1|G7L9Z1_MEDTR Rac GTPase activating protein; Found in the gene: LotjaGi3g1v0401300 LjG1.1_chr3 80353824 80358825 +
3 domain predictions
1 GO term
LotjaGi3g1v0476500.1
n.a. Rho GTPase-activating protein; TAIR: AT5G22400.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q9FMR1|RGAP1_ARATH Rho GTPase-activating protein 1; TrEMBL-Plants: tr|A0A0L9V664|A0A0L9V664_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0476500 LjG1.1_chr3 89312622 89317351 -
3 domain predictions
1 GO term
LotjaGi4g1v0178600_LC.1
n.a. Rho GTPase-activating protein; TAIR: AT5G22400.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q9FMR1|RGAP1_ARATH Rho GTPase-activating protein 1; TrEMBL-Plants: tr|W9QUM2|W9QUM2_9ROSA Rho GTPase-activating protein gacA; Found in the gene: LotjaGi4g1v0178600_LC LjG1.1_chr4 36524968 36531209 -
3 domain predictions
1 GO term
LotjaGi4g1v0178600_LC.2
n.a. Rho GTPase-activating protein; TAIR: AT5G22400.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q9FMR1|RGAP1_ARATH Rho GTPase-activating protein 1; TrEMBL-Plants: tr|W9QUM2|W9QUM2_9ROSA Rho GTPase-activating protein gacA; Found in the gene: LotjaGi4g1v0178600_LC LjG1.1_chr4 36524969 36531141 -
3 domain predictions
1 GO term
LotjaGi5g1v0261200.1
n.a. Rho GTPase-activating protein; TAIR: AT4G03100.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|F4JI46|RGAP2_ARATH Rho GTPase-activating protein 2; TrEMBL-Plants: tr|A0A0L9TWU4|A0A0L9TWU4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0261200 LjG1.1_chr5 56989750 56993045 +
3 domain predictions
1 GO term
LotjaGi5g1v0261200.2
n.a. Rho GTPase-activating protein; TAIR: AT4G03100.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|F4JI46|RGAP2_ARATH Rho GTPase-activating protein 2; TrEMBL-Plants: tr|K7K8H7|K7K8H7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0261200 LjG1.1_chr5 56991055 56992481 +
3 domain predictions
1 GO term