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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0057200 |
| Transcript ID | LotjaGi3g1v0057200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT3G19940.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9LT15|STP10_ARATH Sugar transport protein 10; TrEMBL-Plants: tr|I1LF83|I1LF83_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0057200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:5943458..5945440) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGGTGGAGCTTTAGTTTCTTCAGGAAATGGAAAGCAATTTGAGGGAAAGGTCACAGCATTTGTGTTGGTCACATG TTTTGTGGCAGCCATGGGAGGTCTGCTTTTCGGTTACGATCTCGGCATCACAGGAGGAGTGACTTCCATGGAACCATTCT TGATCAAATTCTTCCCCGGTGTTTACAAGCAAATGAAAGATGAATCAGGACATGAGAGCCAATATTGCAAATTTGATAAT GAGCTTCTTACTTTGTTCACATCTTCTTTATATCTCGCAGCTTTAGTAGCTTCTTTCTTTGCTTCCACCACCACAAGAAT GCTTGGAAGAAAGGCATCCATGTTTGCAGGTGGCTTGTTTTTCCTTGTTGGTGCATTGTTGAATGGTTTTGCTGCCAACA TTGAAATGCTCATCATTGGTCGCCTATTACTTGGTTTTGGTGTGGGATATTGTAACCAAGTAAGGATTTACATCATTATT ATACTTTCAAGTTTTATCATGTATATAGTTTCAGAAATACGTGATTTTGATCCTATAGTTTCAATTGCGAAAGTTAAGTC TATTTAGTTTCAACAGGCTTAATTTGAGCAATTGAAACCACACGAACTAAAATCACGCTTTCATGAAACTATAGCAACTA AAGTGTGGTTAAGCTTTTATTGTATGAATGTGAAGAAGGTTTCAAGATTGATTGGGTTTAAATGTTGTTTATTTCATCAA AACAGTCTGTTCCAGTATATTTGTCTGAAATGGCTCCAGCAAAGATTAGAGGTGCACTTAACATGGGCTTCCAAATGATG ATCACAATTGGAATCCTAGTAGCAAACCTTATCAACTATAAGACTGCCAATCTTGAAAGTGGATGGAGAATATCTTTGGG TATTGGAGCTGTTCCCGCTGTCATGTTGTGTGTTGGGTCATTTTTCCTAGGTGACACACCCAACTCCTTAATTGAAAGAG GCCAAACAGAAGCAGCCAAGACAATCCTGCAAAAGATTCGCGGCATCGACAACGTTGATGAGGAGTTCCAAGATATGATT GATGCATGTGAAGAAGCCAAGAAAGTAGAACACCCATGGAGGAACATCACGCAGCCAAAATACAGACCTCAACTCACTTT CTGTTCTTTAATTCCATTCTTCCAGCAACTCACCGGCATCAATGTCATCATGTTTTATGCACCTGTCCTGTTCAAGACTT TGGGATTCGGCAATGATGCGTCCCTCATGTCCGCGGTTATCACCGGAGGCGTCAATGTGCTTGCTACTTTTGTTTCCATC TTCACTGTGGACAAGGCTGGAAGAAGGATTTTGTTCCTTGAAGGTGGTGCACAAATGTTAATTTGTCAGGTAAAAAACTA TAATTTAACTAATGAGGAACAATTTATATTTAAAATGGTTGCATGTATCATTTCTATGCATGACTAATTTAAAGGTTTTA ATTGTTGCTTGTAGATTGCTGTTGGAAGCATGATTGCCATTAAGTTTGGTGAGAGTGGTGATGGATCATTCACCAAAGGA GAAGCCAATCTTCTATTGTTCTTTATATGTGCATATGTTGCAGCATTTGCATGGTCTTGGGGTCCATTGGGGTGGTTAGT TCCCAGTGAAGTTTGCTCTCTTGAGGTTCGATCTGCGGGTCAAGCTACCAATGTTGCTGTGAACATGTTGTTCACCTTTG CCATTGCTCAAGTTTTCCTCAGCATGTTATGCCACTTGAAGTTTGGCCTTTTCTTCTTCTTTGCTGGATTTGTGCTCATC ATGACCATTTTCATTGCCTTGTTTTTACCTGAGACGAAGAATGTCCCAATTGAAGAGATGAATCAAGTGTGGAAGTCACA TTGGTTTTGGAAAAAGTTCATCTCTGATGTTCCTACCGTTTAGAGTTGTATATTTTCATAATTTCATTTATCTCATTCTG GTTTCTCACGAAATCGCTTGTAGTTAAGCAATGTGTTTTATTCTTCTAACAACTAGATGTTGA
CDS sequence (LotjaGi3g1v0057200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGTGGAGCTTTAGTTTCTTCAGGAAATGGAAAGCAATTTGAGGGAAAGGTCACAGCATTTGTGTTGGTCACATG TTTTGTGGCAGCCATGGGAGGTCTGCTTTTCGGTTACGATCTCGGCATCACAGGAGGAGTGACTTCCATGGAACCATTCT TGATCAAATTCTTCCCCGGTGTTTACAAGCAAATGAAAGATGAATCAGGACATGAGAGCCAATATTGCAAATTTGATAAT GAGCTTCTTACTTTGTTCACATCTTCTTTATATCTCGCAGCTTTAGTAGCTTCTTTCTTTGCTTCCACCACCACAAGAAT GCTTGGAAGAAAGGCATCCATGTTTGCAGGTGGCTTGTTTTTCCTTGTTGGTGCATTGTTGAATGGTTTTGCTGCCAACA TTGAAATGCTCATCATTGGTCGCCTATTACTTGGTTTTGGTGTGGGATATTGTAACCAATCTGTTCCAGTATATTTGTCT GAAATGGCTCCAGCAAAGATTAGAGGTGCACTTAACATGGGCTTCCAAATGATGATCACAATTGGAATCCTAGTAGCAAA CCTTATCAACTATAAGACTGCCAATCTTGAAAGTGGATGGAGAATATCTTTGGGTATTGGAGCTGTTCCCGCTGTCATGT TGTGTGTTGGGTCATTTTTCCTAGGTGACACACCCAACTCCTTAATTGAAAGAGGCCAAACAGAAGCAGCCAAGACAATC CTGCAAAAGATTCGCGGCATCGACAACGTTGATGAGGAGTTCCAAGATATGATTGATGCATGTGAAGAAGCCAAGAAAGT AGAACACCCATGGAGGAACATCACGCAGCCAAAATACAGACCTCAACTCACTTTCTGTTCTTTAATTCCATTCTTCCAGC AACTCACCGGCATCAATGTCATCATGTTTTATGCACCTGTCCTGTTCAAGACTTTGGGATTCGGCAATGATGCGTCCCTC ATGTCCGCGGTTATCACCGGAGGCGTCAATGTGCTTGCTACTTTTGTTTCCATCTTCACTGTGGACAAGGCTGGAAGAAG GATTTTGTTCCTTGAAGGTGGTGCACAAATGTTAATTTGTCAGATTGCTGTTGGAAGCATGATTGCCATTAAGTTTGGTG AGAGTGGTGATGGATCATTCACCAAAGGAGAAGCCAATCTTCTATTGTTCTTTATATGTGCATATGTTGCAGCATTTGCA TGGTCTTGGGGTCCATTGGGGTGGTTAGTTCCCAGTGAAGTTTGCTCTCTTGAGGTTCGATCTGCGGGTCAAGCTACCAA TGTTGCTGTGAACATGTTGTTCACCTTTGCCATTGCTCAAGTTTTCCTCAGCATGTTATGCCACTTGAAGTTTGGCCTTT TCTTCTTCTTTGCTGGATTTGTGCTCATCATGACCATTTTCATTGCCTTGTTTTTACCTGAGACGAAGAATGTCCCAATT GAAGAGATGAATCAAGTGTGGAAGTCACATTGGTTTTGGAAAAAGTTCATCTCTGATTTAAGCAATGTGTTTTATTCTTC TAACAACTAG
Protein sequence (LotjaGi3g1v0057200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGGALVSSGNGKQFEGKVTAFVLVTCFVAAMGGLLFGYDLGITGGVTSMEPFLIKFFPGVYKQMKDESGHESQYCKFDN ELLTLFTSSLYLAALVASFFASTTTRMLGRKASMFAGGLFFLVGALLNGFAANIEMLIIGRLLLGFGVGYCNQSVPVYLS EMAPAKIRGALNMGFQMMITIGILVANLINYKTANLESGWRISLGIGAVPAVMLCVGSFFLGDTPNSLIERGQTEAAKTI LQKIRGIDNVDEEFQDMIDACEEAKKVEHPWRNITQPKYRPQLTFCSLIPFFQQLTGINVIMFYAPVLFKTLGFGNDASL MSAVITGGVNVLATFVSIFTVDKAGRRILFLEGGAQMLICQIAVGSMIAIKFGESGDGSFTKGEANLLLFFICAYVAAFA WSWGPLGWLVPSEVCSLEVRSAGQATNVAVNMLFTFAIAQVFLSMLCHLKFGLFFFFAGFVLIMTIFIALFLPETKNVPI EEMNQVWKSHWFWKKFISDLSNVFYSSNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 6 | 500 | 495 | 3.9E-252 | – | |
| PANTHER | 6 | 500 | 495 | 3.9E-252 | – | |
| Gene3D | 15 | 490 | 476 | 1.2E-123 | – | |
| TIGRFAM | 17 | 483 | 467 | 5.7E-120 | ||
| SUPERFAMILY | 21 | 483 | 463 | 1.57E-55 | ||
| Phobius | 21 | 39 | 19 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| ProSiteProfiles | 26 | 476 | 451 | 41.599 | ||
| Pfam | 27 | 487 | 461 | 9.5E-129 | ||
| CDD | 29 | 474 | 446 | 0.0 | – | |
| PRINTS | 34 | 44 | 11 | 2.4E-28 | ||
| Phobius | 40 | 81 | 42 | - | – | |
| Phobius | 82 | 101 | 20 | - | – | |
| TMHMM | 83 | 105 | 23 | - | – | |
| Phobius | 102 | 112 | 11 | - | – | |
| TMHMM | 112 | 134 | 23 | - | – | |
| Phobius | 113 | 132 | 20 | - | – | |
| Phobius | 133 | 137 | 5 | - | – | |
| TMHMM | 138 | 160 | 23 | - | – | |
| Phobius | 138 | 159 | 22 | - | – | |
| PRINTS | 138 | 157 | 20 | 2.4E-28 | ||
| ProSitePatterns | 143 | 168 | 26 | - | ||
| Phobius | 160 | 170 | 11 | - | – | |
| TMHMM | 167 | 189 | 23 | - | – | |
| Phobius | 171 | 190 | 20 | - | – | |
| Phobius | 191 | 201 | 11 | - | – | |
| TMHMM | 199 | 221 | 23 | - | – | |
| Phobius | 202 | 221 | 20 | - | – | |
| Phobius | 222 | 282 | 61 | - | – | |
| Phobius | 283 | 307 | 25 | - | – | |
| TMHMM | 287 | 309 | 23 | - | – | |
| PRINTS | 293 | 303 | 11 | 2.4E-28 | ||
| Phobius | 308 | 318 | 11 | - | – | |
| TMHMM | 319 | 341 | 23 | - | – | |
| Phobius | 319 | 341 | 23 | - | – | |
| ProSitePatterns | 337 | 354 | 18 | - | ||
| Phobius | 342 | 347 | 6 | - | – | |
| TMHMM | 348 | 370 | 23 | - | – | |
| Phobius | 348 | 368 | 21 | - | – | |
| Phobius | 369 | 387 | 19 | - | – | |
| TMHMM | 385 | 407 | 23 | - | – | |
| Phobius | 388 | 410 | 23 | - | – | |
| PRINTS | 389 | 410 | 22 | 2.4E-28 | ||
| Phobius | 411 | 421 | 11 | - | – | |
| PRINTS | 412 | 424 | 13 | 2.4E-28 | ||
| Phobius | 422 | 445 | 24 | - | – | |
| TMHMM | 427 | 446 | 20 | - | – | |
| Phobius | 446 | 450 | 5 | - | – | |
| Phobius | 451 | 472 | 22 | - | – | |
| TMHMM | 451 | 473 | 23 | - | – | |
| Phobius | 473 | 509 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0057200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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