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LotjaGi3g1v0061000.4

Overview

Field Value
Gene ID LotjaGi3g1v0061000
Transcript ID LotjaGi3g1v0061000.4
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Cellulose synthase; TAIR: AT5G05170.1 Cellulose synthase family protein; Swiss-Prot: sp|Q941L0|CESA3_ARATH Cellulose synthase A catalytic subunit 3 [UDP]-forming]; TrEMBL-Plants: tr|A0A151TPT4|A0A151TPT4_CAJCA Cellulose synthase; Found in the gene: LotjaGi3g1v0061000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:6459056..6465426) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGTCAGAAGGGGAAGCTGGGGTGAGTAAAACAAGTTTTTTTTTTAATATTTGATTTCTTCAAATGTTAAATGATTC TATTGAGGTGGGGTTGGTTGATGTTTGGTGACACTTTTTTGATGCCATTTTTTGTTGCTCAGGCAAAGCCAATTACAACA TCGGGTGCCCAAGTGTGTCAGATCTGTAGTGATAATGTTGGGAAGACTGTGGATGGTGAAGCATTCATTGCTTGTGATGT TTGTGCTTTCCCTGTCTGCAGGCCTTGTTATGAGTATGAGAGGAAAGATGGGAATCAGTCTTGCCCTCAGTGCAAAACCC GGTACAAGAGGCACAAAGGTAAATAAATGAAGCTATAATGTTGTGATCTGTGGTGGTGAAGCTGCATATTAAGATTTCTA GATTTTAATATTCATGAATTGCGTAGCATGTGATTTGAAAATAGGCGTTAAGCTTTTCGTGACACACATTGGGGAGGATC ATTCTTTGTAATGAGATTCTTAATGATTTTTTTTTTTCATGAAAAAAATGTTAACATTGTAATACACTTGAAAAACATGA AATTCCCTTGGAAGCGATTTGACCTAAATAATGCACTTAAACCTTAATACACTTTAGGAGTGAACAAGCAAGGCAGTGAG CCCGTTTGGATGCGGACTAAAGAACAGTTATTAGAGCTTATCTACTAAACAAGAACACTAGATAAGCTCTAATAAGTGCT ATTTGGTTATCTACTAAAAAAAGCACTCGATAAGCACTGATAAGTGCTATTTGGTCAGCATCGGAACGGGCTTAGTGTTG GTTAGGTGTAGATCACTCGCTCTCTTTCTTTACTTCTCAGGGGTATTTCCAAATATTCCAAGTGGATAGATAGTTTATCG AATATTTCATTTGTAGTTTAGATATTTCCATCTGTAATCAAACTACTTAATTGATTCTAGGAAGTCCTGCAATTCTTGGA GACAGTGAAGAGGAGGGTGGTGCTGATGATGGTGCTAGTGACTTCAATTATGATTCAGAACATCAAAACCAAAAGCAGAA GATTTCGGAGCGTATGTTGGGCTGGCAATTAACATATGGGCGATCAGAGGAGGTTGGTGCTCCAAATTACGACAAGGAAG TTTCTCACAACCACATTCCTCGGCTGACCAGTGGACAAGAGGTCATTCAATTTGCTTCCTTCATGAAGTGTTCTCCACCT CCCTTTTTAAAAAGAGTGCAACTTTCTCCTTTAATTTTAGGTATCTGAACGAAATTTGGTAAAATCTTCAATTTCAGGTC TCTGGAGAGTTTTCTGCAGGCTCACCTGAGAGGCTCTCGATGGCATCTCCCACAGCTGGTGGCGGGAAGCGTGTCCATAA TCTTCCTTATTCATCTGATGTTAATCAATCTCGTAATTCTCTGATCCTTCTCACCATGCCCATTTTCATCAATTTTTCTT TATCTGATTGTGATTTGAGTTTTTTTGGTTATATTCCCGTGCAGCAAATATCAGGGTCGGGGATTCAGGAGGATTGGGCA ATGTAGCATGGAAAGAAAGGGTTGATGGCTGGAAGATGAAGCAAGAAAAGAATGTTGTTCCAATGAGCACTGGCCAGGCT GCTTCTGAAAGAGGAGCTGGAGATATTGATGCCAGTACTGATGTGCTTGTCGATGATTCTCTGTTGTGAGTATTTTTCTT TAGTGCGGCTCCATTTCTATTCGCAGCATCAAATGCCTATTTTTAGTGTCTGTGATTTATACCATATTTATTGTTATTTT GCTCTTCAGTAGTTAAGAATCTAATATGGTAATATATCATTACTAATACCAGGAAGATTTGGTAAATACCACTGTTGTAT ATAAGTTATTTATAGTTCTCAGTTGTTGAATAAGCATATTTGCTCAATTAAGTCTCTTGTTTGTGAACTCAAATTCTTTG TTATGCAGGAATGACGAAGCTCGACAACCTCTTTCCAGGAAGGTTTCCGTTCCGTCATCAAGAATAAATCCATATCGTAT GGTCATTATTCTGCGGCTGATTATCCTTTGCATCTTTTTGCATTATCGAATAACAAATCCAGTGCCCAACGCATATGCAT TGTGGTTGATATCTGTCATTTGTGAGATTTGGTTTGCCATATCATGGATATTGGATCAATTCCCTAAGTGGCTTCCTGTA AACCGTGAAACATATCTTGACAGGCTCGCGCTAAGGTAGGGAGTTTAAACTTTACTGTTCTTGTGGTCAAGAAATCATGA CATGTGGCATGTATTTTTTCTTTTTTCACCCTGACTTTCTTTTAATACAAAATCCTTGTGTGTTGCAGATATGATCGGGA AGGAGAACCGTCACAGCTTGCAGCTGTTGACATTTTTGTTAGTACGGTTGACCCATTAAAGGAGCCCCCACTTGTCACCG CCAATACCGTACTATCTATTCTTGCAGTTGACTACCCAGTGGATAAGGTCTCCTGCTATGTCTCTGATGATGGTGCTGCG ATGTTGACATTTGAAGCACTTGCTGAGACATCAGAGTTCGCAAGGAAATGGGTTCCTTTCGCCAAAAAGTATAGCATTGA ACCCCGTGCACCTGAGTGGTACTTTGCGCTGAAGATTGATTATTTGAAAGATAAGGTTCATCCATCATTTGTCAAGGATC GTAGAGCAATGAAGGTAACAGGTTGACTCACAACTGTGTTATTCAGTTGGGTTTGCATGCATTCGTTTTATTTGTATTAG TTTTGGATTCTGCAAGGGTATCTTTTAATTTCACTTCCCTATTATGTTTTAGAGAGAATATGAAGAATTTAAAATTCGTA TTAATGGACTGGTTGCGAAGGCATTGAAAGTTCCCGAAGAAGGGTGGGTGATGCAAGATGGTACCCCATGGCCGGGAAAT AACACCAGAGACCATCCAGGAATGATCCAGGTTGGTTGAATTCTCGTGATGATGATCACTTCTTACAACCTGTTATTCAT TTATTAGCTTTGAAGCCATCTCTCAAAGTTATTTTGTTCCTAGATAGAGTGCATGCCACATTTTTAGTGATGAAAACATT TGTATAGCAAACTGTTTTCACATGTTACTCTTGTGGACTCTATTTTGTTTGTGCGTGAATTTCTAACTTTCTGTAGCTAA TTACTTATTAATAAGCACTTATCTCCAGCATGTCATTTATCAATATTGCATTCTATTTCATCCGCAGGTCTTCTTGGGCC AAAGTGGTGGACTTGACTCTGATGGTAATGAACTTCCACGTTTAGTCTATGTTTCTCGTGAAAAGCGTCCAAGTTTCCAA CATCACAAGAAAGCCGGTGCCATGAATGCCCTTGTGAGTGTCATTTACAATTGAAAATGTGAATGTTACTTATCTCCCTC ATGTACATGGAAATATTTTTATAACTGGTGGTGACCCATATAACTTTTGCAGGTTCGAGTATCTGCAGTCCTTACCAATG GACCTTTTTTATTGAATCTTGATTGTGATCACTACATAAACAACAGCAAGGCCTTGAGAGAAGCAATGTGCTTTATGATG GATCCTAACCTTGGTAAAAATGTTTGCTATGTCCAGTTTCCGCAGAGGTTTGATGGTATTGATAGGAATGATCGATATGC CAATCGTAATACTGTTTTCTTTGATGTAAGTAACTAAGTTTCTTTAACCATACTCGTATTATCTGATTTTTGTTACTTTT TATTCTTGTTGCCCCATATGGGATTAAAACCTCTTTTTGATACTTACTCAATCTTGAAACTTCCTTAACAGATAAACTTG AGAGGTTTGGATGGCATTCAAGGTCCTGTTTATGTGGGTACTGGGTGTGTCTTCAACAGGACTGCTTTATATGGTTATGA ACCTCCTCTTAAACCCAAGCATAAAAAGCCTGGGTTGCTATCATCGCTATTTGGTGGAGATAGAAAGAAGAGCTCAAAAT CTAATAAGAAGGGATCAGACAAGAAAAAGTCTAGCAAGCATGTAGACCCAACCGTGCCAATCTTCAGTCTCGAGGATATA GAAGAAGGAGTAGAAGGTAGGCCCGTCAATGTTTTTAATTGGCTCCTCTTTAGATTGCTTTGATAGGTCTACCATTCAAT GCGTGTTTGGATTTCCATTGAACTCAACGTGGATCCTCGTTAAACTTACCGCGGTAAAATCTTGCTTCTCCGATCCACAT TGAATTCAATGTGGCAAATTCTATCTTCATTGATACCATGATATGTGAAATCACGTTTTCGTTCACACCAAAAGCATATA CTCAATCTATTTTTTTCACATTTAGTTTTGTTGTCATTTTGCATTGCTAAAATAGAGATCTGTGACTTGCTTTCCTGCTT CTGTGAGAGCTTCAAATCTGCTTCATATTTTTAATTGATCGTCACATGTTGAAAGTGTTTTTACCTGATCAGACATGTAC AAATTTTCCTGCTTTAACCTCTTGGGGTGGCATTACTGTTCTTTAGCAATTGACTAATTTGCTTTCACTAATTAGACTGT TTCTTCTCATACAACTTTTTCAGGGACTGGATTTGATGATGAGAAATCACTACTTATGTCACAAATGAGCCTTGAGAAAA GATTCGGTCAGTCTGCTGTTTTCGTAGCCTCTACGCTGATGGAGAATGGTGGTGTTCCTCAGTCTGCTACTCCAGAAATT CTTCTTAAGGAGGCTATTCATGTTATCAGCTGTGGATATGAGGATAAATCAGAATGGGGAACAGAGGTGTGGTTTTATCT TATGTTGAATAATATTTCATGTTTGATTTTGTTCCCATTCTTTCTAATTATTTGAATTGAGCATATTATTCCCAACAGGT TAGTGCATTCAGAGACCAACAGATTGTATCTCACTGTTTAGTTCAATAGATGTTTACACTGAATATTGGTGCTGCAATGA CTCGTTGATATTAAAAAATAGGATGCATTCATGTAATTATCTTGAAAGTTAAACTACTTTGTCTTCTGTTCTACAGATAG GATGGATTTATGGTTCTGTCACAGAAGATATTCTTACTGGATTCAAGATGCATGCCCGAGGTTGGCGGTCTATATACTGC ATGCCTAAGCGCCCAGCATTTAAAGGTTCTGCTCCTATCAATCTTTCGGATCGTCTAAACCAAGTACTTCGATGGGCTTT AGGATCTGTTGAAATTCTACTAAGCAGACATTGTCCCATCTGGTACGGTTATGGTGGAAGACTAAAGTGGCTCGAACGGT TTGCATATGTGAACACCACAATCTATCCAATCACTGCCATTCCCCTTCTCATGTATTGTACCTTGCCCGCTGTCTGCCTT CTGACCAACAAGTTCATCATTCCCCAGGTTTGTTATTTATTTCTCTATAAAACATACTTCAGTAACTAAACAAGTGATTA AAGACATTCATAAATGGTTAATATCAATTTTAATCAATCTTTCTCTTGGTTTCATCCAAAATTAGTAACACATTAACTAG GATCTCCAATATTGTAAAAGTCTCCCATGTTCTTTCCTGAAACTACCCCAAAAGCTAGCTTAGGGGTGAGAGTTGTCCTA CCATTTGAAAAACACTTATTTGGGATAAAGGCCAACATGTTGTAAAAATATCTCCCATGTTCTTTCAAGAAATTACCCTT ATTGAGATTCCACATCGACTAGAGATAAGACAATAGAGCTTATAAAGGCTTTGCCAATCTTGGCCTAGCCCGAATAGGCG AATACTAAGAACTCTCATGAACATGACCTTGTGAATTGAAAAAAAACACATTGTTTTCAACATGTTGCTTATGTAATGCA ATATCCAAACTTGTTTTTGTTTGCAGATCAGCAACATTGCAAGTATATGGTTTATCTCTCTCTTTCTTTCCATTTTTGCA ACTGGGATCCTTGAGATGAGGTGGAGTGGTGTTGGAATTGATGAGTGGTGGAGGAATGAACAATTCTGGGTTATTGGTGG TGTGTCAGCACATCTCTTTGCTGTGTTCCAAGGTCTACTCAAAGTGCTCGCTGGAATTGACACCAACTTCACTGTCACCT CCAAGGCATCAGATGAAGATGGCGACTCTGCAGAGCTCTACTTGTTTAAATGGACAACCCTTCTCATACCCCCCACAACC CTTCTCATAATAAACTTGGTTGGGGTTGTTGCTGGAATTTCCTATGCCATTAACAGTGGTTACCAGTCATGGGGTCCCCT CTTTGGTAAGCTTTTCTTTGCATTTTGGGTCATCATCCATCTCTACCCCTTCCTCAAAGGTCTCATGGGACGGCAGAACC GAACACCGACCATTGTGGTGGTCTGGTCCATTCTTCTTGCATCCATTTTCTCTCTGTTATGGGTACGAGTTGATCCGTTC ACCACAAGAGTCACCGGTCCTAAGGTTGAGGAGTGTGGAATTAACTGCTAG 

CDS sequence (LotjaGi3g1v0061000.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTCGGGGATTCAGGAGGATTGGGCAATGTAGCATGGAAAGAAAGGGTTGATGGCTGGAAGATGAAGCAAGAAAAGAA TGTTGTTCCAATGAGCACTGGCCAGGCTGCTTCTGAAAGAGGAGCTGGAGATATTGATGCCAGTACTGATGTGCTTGTCG ATGATTCTCTGTTGAATGACGAAGCTCGACAACCTCTTTCCAGGAAGGTTTCCGTTCCGTCATCAAGAATAAATCCATAT CGTATGGTCATTATTCTGCGGCTGATTATCCTTTGCATCTTTTTGCATTATCGAATAACAAATCCAGTGCCCAACGCATA TGCATTGTGGTTGATATCTGTCATTTGTGAGATTTGGTTTGCCATATCATGGATATTGGATCAATTCCCTAAGTGGCTTC CTGTAAACCGTGAAACATATCTTGACAGGCTCGCGCTAAGATATGATCGGGAAGGAGAACCGTCACAGCTTGCAGCTGTT GACATTTTTGTTAGTACGGTTGACCCATTAAAGGAGCCCCCACTTGTCACCGCCAATACCGTACTATCTATTCTTGCAGT TGACTACCCAGTGGATAAGGTCTCCTGCTATGTCTCTGATGATGGTGCTGCGATGTTGACATTTGAAGCACTTGCTGAGA CATCAGAGTTCGCAAGGAAATGGGTTCCTTTCGCCAAAAAGTATAGCATTGAACCCCGTGCACCTGAGTGGTACTTTGCG CTGAAGATTGATTATTTGAAAGATAAGGTTCATCCATCATTTGTCAAGGATCGTAGAGCAATGAAGATTCGTATTAATGG ACTGGTTGCGAAGGCATTGAAAGTTCCCGAAGAAGGGTGGGTGATGCAAGATGGTACCCCATGGCCGGGAAATAACACCA GAGACCATCCAGGAATGATCCAGGTCTTCTTGGGCCAAAGTGGTGGACTTGACTCTGATGGTAATGAACTTCCACGTTTA GTCTATGTTTCTCGTGAAAAGCGTCCAAGTTTCCAACATCACAAGAAAGCCGGTGCCATGAATGCCCTTGTTCGAGTATC TGCAGTCCTTACCAATGGACCTTTTTTATTGAATCTTGATTGTGATCACTACATAAACAACAGCAAGGCCTTGAGAGAAG CAATGTGCTTTATGATGGATCCTAACCTTGGTAAAAATGTTTGCTATGTCCAGTTTCCGCAGAGGTTTGATGGTATTGAT AGGAATGATCGATATGCCAATCGTAATACTGTTTTCTTTGATATAAACTTGAGAGGTTTGGATGGCATTCAAGGTCCTGT TTATGTGGGTACTGGGTGTGTCTTCAACAGGACTGCTTTATATGGTTATGAACCTCCTCTTAAACCCAAGCATAAAAAGC CTGGGTTGCTATCATCGCTATTTGGTGGAGATAGAAAGAAGAGCTCAAAATCTAATAAGAAGGGATCAGACAAGAAAAAG TCTAGCAAGCATGTAGACCCAACCGTGCCAATCTTCAGTCTCGAGGATATAGAAGAAGGAGTAGAAGGGACTGGATTTGA TGATGAGAAATCACTACTTATGTCACAAATGAGCCTTGAGAAAAGATTCGGTCAGTCTGCTGTTTTCGTAGCCTCTACGC TGATGGAGAATGGTGGTGTTCCTCAGTCTGCTACTCCAGAAATTCTTCTTAAGGAGGCTATTCATGTTATCAGCTGTGGA TATGAGGATAAATCAGAATGGGGAACAGAGATAGGATGGATTTATGGTTCTGTCACAGAAGATATTCTTACTGGATTCAA GATGCATGCCCGAGGTTGGCGGTCTATATACTGCATGCCTAAGCGCCCAGCATTTAAAGGTTCTGCTCCTATCAATCTTT CGGATCGTCTAAACCAAGTACTTCGATGGGCTTTAGGATCTGTTGAAATTCTACTAAGCAGACATTGTCCCATCTGGTAC GGTTATGGTGGAAGACTAAAGTGGCTCGAACGGTTTGCATATGTGAACACCACAATCTATCCAATCACTGCCATTCCCCT TCTCATGTATTGTACCTTGCCCGCTGTCTGCCTTCTGACCAACAAGTTCATCATTCCCCAGATCAGCAACATTGCAAGTA TATGGTTTATCTCTCTCTTTCTTTCCATTTTTGCAACTGGGATCCTTGAGATGAGGTGGAGTGGTGTTGGAATTGATGAG TGGTGGAGGAATGAACAATTCTGGGTTATTGGTGGTGTGTCAGCACATCTCTTTGCTGTGTTCCAAGGTCTACTCAAAGT GCTCGCTGGAATTGACACCAACTTCACTGTCACCTCCAAGGCATCAGATGAAGATGGCGACTCTGCAGAGCTCTACTTGT TTAAATGGACAACCCTTCTCATACCCCCCACAACCCTTCTCATAATAAACTTGGTTGGGGTTGTTGCTGGAATTTCCTAT GCCATTAACAGTGGTTACCAGTCATGGGGTCCCCTCTTTGGTAAGCTTTTCTTTGCATTTTGGGTCATCATCCATCTCTA CCCCTTCCTCAAAGGTCTCATGGGACGGCAGAACCGAACACCGACCATTGTGGTGGTCTGGTCCATTCTTCTTGCATCCA TTTTCTCTCTGTTATGGGTACGAGTTGATCCGTTCACCACAAGAGTCACCGGTCCTAAGGTTGAGGAGTGTGGAATTAAC TGCTAG 

Protein sequence (LotjaGi3g1v0061000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVGDSGGLGNVAWKERVDGWKMKQEKNVVPMSTGQAASERGAGDIDASTDVLVDDSLLNDEARQPLSRKVSVPSSRINPY RMVIILRLIILCIFLHYRITNPVPNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAV DIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALAETSEFARKWVPFAKKYSIEPRAPEWYFA LKIDYLKDKVHPSFVKDRRAMKIRINGLVAKALKVPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDSDGNELPRL VYVSREKRPSFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKNVCYVQFPQRFDGID RNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLLSSLFGGDRKKSSKSNKKGSDKKK SSKHVDPTVPIFSLEDIEEGVEGTGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPEILLKEAIHVISCG YEDKSEWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWY GYGGRLKWLERFAYVNTTIYPITAIPLLMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDE WWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDSAELYLFKWTTLLIPPTTLLIINLVGVVAGISY AINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPKVEECGIN C 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 79 79 -
PANTHER 5 879 875 0.0
PANTHER 5 879 875 0.0
TMHMM 77 99 23 -
Phobius 80 99 20 -
Phobius 100 105 6 -
Phobius 106 126 21 -
TMHMM 106 125 20 -
Phobius 127 658 532 -
Pfam 160 874 715 0.0
SUPERFAMILY 174 694 521 1.06E-10
Gene3D 271 443 173 1.8E-14
MobiDBLite 452 485 34 -
TMHMM 657 679 23 -
Phobius 659 679 21 -
Phobius 680 690 11 -
Phobius 691 709 19 -
TMHMM 691 713 23 -
Phobius 710 728 19 -
TMHMM 728 750 23 -
Phobius 729 751 23 -
Phobius 752 771 20 -
Phobius 772 800 29 -
TMHMM 776 798 23 -
Phobius 801 811 11 -
TMHMM 808 830 23 -
Phobius 812 830 19 -
Phobius 831 841 11 -
Phobius 842 862 21 -
TMHMM 843 862 20 -
Phobius 863 881 19 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Molecular function Cellulose synthase (UDP-forming) activity Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1).
Biological process Cellulose biosynthetic process The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0061000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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