Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi3g1v0061400
Transcript ID	LotjaGi3g1v0061400.5
Related isoforms 4	LotjaGi3g1v0061400.1 LotjaGi3g1v0061400.2 LotjaGi3g1v0061400.3 LotjaGi3g1v0061400.4
Lotus japonicus genome version	Gifu v1.2
Description	Carotenoid cleavage dioxygenase; TAIR: AT3G63520.1 carotenoid cleavage dioxygenase 1; Swiss-Prot: sp\|Q8LP17\|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1; TrEMBL-Plants: tr\|B5BLW2\|B5BLW2_MEDTR Carotenoid cleavage dioxygenase; Found in the gene: LotjaGi3g1v0061400
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:6496787..6502792) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGGATGAGAAGAAGAACACCACTGGTACTGGTGCTGGAGGGTTGCCAGTGAAGGTGGAACCAAAACCCAGTAATGG TTTCACTTCAAAAGTGATTGATTTGTTGGAGAAGCTGGTTGTGAAATGCTTTTATGATTCTTCACTGCCCCATCATTGGC TTGCTGGTAATTTTGCTCCGGTTCATGATGAGACTCCTCCTACTAAGAATCTTCCTGTCAGAGGGTTCCTACCGGTTGGT ACCATTGCCTGTTAGATACCCATTTTAGGATATCTGATAATGTGTTATATTTCTCAATTGGAATATTTTGCTGTAACATA CCTTGTTATTAGACCCCTTGTTCATCACTTACTATTTGAAGTGTATTGTAGGATTGCTTCAATGGAGAGTTTGTCAGGGT GGGACCTAATCCGAAGTTTGCTCCTGTGGCTGGATATCACTGGTAAAAAATGATTCTTTTGTTGCTAAAAAATATTTGGT GGAAAATATATCTTAGTGATCCATATTACTTATCAGATTATTGGTTTTCTTTTGTCATATTAACACTTTTATGTGAAGGT TTGGTATTAACATGGAGCAGTTTTTGTTTATCTGAATTAAAAAAAAATGTGTTCTTAGTATGGAGTTTTATGCTTATGCC GTGCTTTCCCTATCTGTTTTTGCAGGTTTGATGGAGATGGGTGTGTGATTCTCTTCCATTCTTTAAAAATATATTTCTTT CATATTTCCTGCATTGTGCATCTTGACTATCCATTTTTTTTGACATGTGTAATATGTGAGCACAAGTCTAACATAATGAT AATGGCTTAGTGATCACAGTTTAATACATAAGTTTGAGCCCCTGTTCTGTTGGAACTGCACAGCCAGATCATATCATATA GGATGTAAATATTTGTTTTCTTTTGAATACCTTTTGAGGTTTCCCCATTCCTTTTTCCTTGCCTCTTCGCCTAATAGCCT AAGCTTTTGAGAGAGTTGGTTCATGATAATATGGTATCAAATCTTATACGACAAAGTGATTTTCAGTTCTTTCCACTTAT GTTCTTCTAATAAAAAGGTAAATTTCAGCACAAGATTTGTGGGCTACAGGCCTAGTACATTTTTCAAGCTTTAAACCCTC AAGCCTCTTCTGTGAGGGGTGTGTTGAGGATGTATCATTAAAAACCATCCATGTGTCTTTATCAAATAGCTTAAGCTTTT AAGAGAGTTAGTTCATGACAAAGTGCTAGCAACACTCACTTTAACACTCTTTCCAACAATGTGTCATTGATTGGTTGAAA TTCATGTGGAGTCTACTAAAAATATGGATCCCACTTTCAATTTAGTGGGACTCATAGAAAATTAAGTGTGCCCACACTCA AGTTAACCAACCACTACTTATTATATCTGTATTATGTTTTGAAATCGTAGTTCAGTAGAGCGCATGTTTTGAAATGATTT TGAGTTTAACATTTCAAATCCTCAAACTGATTATGCCTAATCTTTTCTCGTCTGAATTTTATATATGCATGATTATGACA TTGTTAAATTTAGTTTAACTTACTAATGATATATCCTTCAGAAGTTTCTCAGGGCTTGTTATATTAATTAATAGGTTAGT GCTGGGTGATAGGGGAGGATCACATGAAAGTATCAAGGAGGATTGGAAAATTAGCATTAGAGACAACTGTGTAACCTCCT GCCCATGTGGCAGGATGAGAGGGAAATCATGAAGGGGATCAGTTAAGTGGATAAGAGCGGAAATGGAGGAATAAAAAGAA GGAAGAGATAGAAGAGAGAATCAGGAAAGAAGTGAGTTAGGAAGGTGGGAGAGAACCTGGCATTTCGAATAACCTGGGCT GTTCGTATTATTTTGTTGAAAGAGAATTCATCTCAGTTAATGTACACATCTATCTCTGCTTTTAATATCAAGCTGAGAGC AGTGGTTGATTTATAGTAAATAATGTGTTTTTGGTCATTCTGCTCTAATTCGGTTTCAATCCTTATATTTTTACTCCATG TCTGTTGTAGTACTTATTTTTTCAATTTGTTCATTCTAATCTCTCACTGTACTTAATGTATCCTATTTGTCCTTATGTTA AGTAATCCTTCATTCAAGTTATGTTAATAAATGATATAAAATGGTTTTTTAAAGTAGTAGTTTAGATAGGAATAGGAAAG AATTTTGTATGCAACACGTTGTTCACTTAATATATAGTGAAAATATAGGTCTAAAATCTTAATAAAGCCTACATAATATG GTATTTCTGATAAAGAGTCTGCTGTACAGATGCCGGTTCACTTTAATTTTTTTCCTGAATTATACACCAGTTCCAATTAT GCTTCACTAACACTTTTGAATTTCAGCAGCTCATCATAGTGGAAATAATAATGTTCTTAAATTTTGGGTGGTCAATAACA TTCATAAAAAGTTCATAGTTTTGTTGTCTGGTCCTCTAATATGGTTAATTGCAGAATGATTCATGGTTTGCGAATCAAAG ATGGAAAAGCCTCATATGTTTCTCGTTTTGTGAGAACTTCTCGTCTTAAACAAGAAGAATACTTTGGAGGCTCTAAATTT ATGAAGGTAGGAACAGAAAGTGAAAATATATAAGCTTAGTGAAGAATTTATTACTCTTAGAACTTTTAGGTTCCCAAGAC AAGTGTAACTTCTTGGATCTCATTTTCAGATTGGAGATCTCAAGGGTCTATTTGGACTGCTAATGGTTAACATGCAAATG TTGAGAACTAAATTGAAAGTACTGGATGGTTCATATGGACATGGAACAGGTAACTCATGTTAACTCGTTTTGGTGAAGTC TTCGTGTGGTTATTTACTGGGACTATTATGCTATTGTATGTGACTGGAATAGCTGAAACTAACTTCTGCTCATACTCTCA TGTCTATCAGCTAATACAGCTCTTGTTTATCACCATGGGAAGCTTCTAGCACTCTCGGAAGGAGATAAACCTTGTGAGTA TTGTTCCTATTTCACTTTTATGAAAGATGTAAACTTGTTGATTATATCTGAATGCCATAAACTGAATAGAACAAAGGGGT TAAAATAGATTCATATGGTTCAGGGGTGTCCGTCAGCCATTATGATCTTGAGCATCAGTGGTTTTTTCATTTCTCATTTT GAAGTAGTCTCATTTTGAATTTTGCAGATGCTATTAAAGTTTTTGAAGATGGTGATTTGCAGACACTTGGCCTGCTAGAT TATGACAAGAGATTGGACCATTCCTTCACTGCTCATCCAAAAGTTGACCCATTTTCTGGTGAAGCCATCTTCAATAAATA GTGAAAAGTTGACTTATTTAATGTAATTATTTATTCCAACAAACAAATATCCTGTATGCAGGGGAGATGTTTACATTTGG TTATTCACATACACCGCCATATGTCACATACAGAGTAATTTCAAAGGATGGTTTTATGCATGACCCTGTACCTATAACAG TATCAGACCCCATCATGATGCATGATTTTGCCATCACAGAGAACTACGCCATCTTTATGGATCTTCCTCTGTACTTTAGA CCAAAGGTATTGCAGGTGTTTCTGTTAATGTAATCTTACAAAAGAGTAATTTCTTTATCATATCATTCAACTATACCAAG CTTGGTGTTAAAATGATCTTGTTTATTATGAGTAAAAATAATGCTTTGCTTTTATACTTGTTAGAAGTTAAAAACAAAAT CCTAATCCTGTCCTGCACCTAATAGTTCAATTTTTTGGATATTCTTAATATCATATCAGAGCCACCGTACCCTAACCAAG TGAATAGAATATCAATATTCTTCCCAATTCATAATTAAATGTGGCTCTATATTTTTTAAGGTTTTTAAGGGGGGGACATT TTATAGATAAACGCCAAGTCTGGGTTTGGATTTACTAGCTTCAGGTTTTGAGATTGTAGGTTCTTGATGCTACTTTCTTC CTTGTAGTGAAATATTTTTAAATGAAATGTTCATAATGTGAATTGTTACAGTGAATGTGGGCATGGACAATATGATTTCA TTTTCAAATGGGATAGGGTTAATTTAAGGATGGTTTAATGGTATACAGTCCGTTGACTTCATGCATCAGTTGATGGGAAC TAATGATCTAAGTTGTTGAATGAAATCCATATTTCAGGAAATGGTGAAAAATAAAACACTGATATTCTCCTTTGATTCAA CCAAGAAAGCTCGCTTTGGTGTCCTACCTCGGTATGCTAAGGATGATAAGCAAATTAGATGGTTTGAGCTACCAAACTGC TTCATATTCCACAATGGTGTGTTTGTTTGCTATTTTTTTCTCCTTCATAAATTGTTTATTAATATTCTGCAATGATCTCG TAAAGATTCTGTGATTCATAAAATTGAAGTGCATGATAACATAATTTGAGTGCAGTCCAGTATATTTACCCAGCCAACTT ATAAAAATAGTCTTTCTTTTTATAAATCATAGTAATGCCAAAGTTAGATAGGAACAATGTATTACGGATAAAAGTAAGAA CACAGATTCAAGCTTCAATCTGTGCCTTAAGCTCTTCAAACAGAAATGTCCATTGAAACTTTTATATGACCTTTTTTCTT CTGTTTTTCATTTAGCCAATGCTTGGGAGGAGGAGGATGAAGTTGTTTTGATCACATGTCGCCTTGAGAATCCAGAGTTG GACAATGTTGGCGGGGCTGTCAAGGAAAAGCTCGAAAGTTTCTCAAATGAGCTGTAAACCGATTCATTCTAATATGTAAA TTACGAAGCAAATTTTACTAGATGGTCGTTATTTATTTATGGATATTGAACTTTTTACAGGTATGAAATGAGGTTTAACA TGAAAACGGGTGAAGCTTCTCAACAGAAACTATCAGCATCTACAGTAGATTTTCCTAGGGTGAATGAAAGCTACACTGGC AGGTAAGTTTATTCTCTCCATGCTGAGAAAATTCAGGGTAGTTTGAAAATGAAACCCGTAAATCATCCTATCTTAATCAT ATGTAAATTCGATAGTTGTTATTTTCGTAGTCGCATTAATTTTTTTGTGTACTTATTTGAAAATGAATGACAGTTCTAGT GTGTGTGCTTTCCAAATTAAGTTTAAGATTGAGTCCGAACAGTAGTTAAGTTTATGCTTGTTTTCCATATCCTGCATTTA CCATTCGTATTTCATCAGGAAACAGCGATATGTATATGGAACTATATTAGACAGCATTGCAAAAGTTACCGGGGTTGTTA AATTTGATTTGCATGCCAAACCGGATTCTGGAAAAACAAAGCTTGAAGTTGGAGGAAATGTTCAGGGTCTCTATGACTTG GGACCAGGGAAGTTTGGATCTGAGGCTGTTTATGTCCCACGTGTCCCTGGCACCGATTCTGAAGAAGATGATGGATACTT GATCCTATTTGCACATGATGAGAATACCGGGTATCATTTTCCTCTGCACTTTTCATGCAGTGGCTTTTGCGAAATTGTTT ATATACGCATGGATTATAATCATAATTATGACTGTTATGAACTTATGAGTTATGATCAGTGTAATTCCTTAGGAATCAGA AACAGCTGTGTATGGAATATGGATCACTATGACATGACCTATTTTTAGTTTTTTTATCTCCTTTTTAATAGTATAAAATC TAACATGATTCTAAATAATAAAACTGCAGCAAATCATTCGTGCATGTCATCGATGCAAAAACAATGTCAGCAGATCCTAT TGCAGTTGTAGAATTGCCGCATAGAGTTCCATATGGTTTCCACGCCTTCTTTGTGACAGAGGTTTGTGTGACTTCATATT GATTATTTCTACATTGAATTTCATTATCTCACTCACATTACTCGGAATGTTTACTTTGTAACTGCTTTTGGGGGTATGAG TACATTTGACTTGAGTGCCTAAGTTTCATCTAGTATGAACTAATTTATAGAAAGATAAAACTAAATATAGCTCTAAGTTA TTAACTTAGCACAGTTTATCATCCTTGTTTATATTTAGTTTTTTTATGTTACTTATCAAAGAAGTTCTAAGCAATTGCTC ATATAG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0061400.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGATGAGAAGAAGAACACCACTGGTACTGGTGCTGGAGGGTTGCCAGTGAAGGTGGAACCAAAACCCAGTAATGG TTTCACTTCAAAAGTGATTGATTTGTTGGAGAAGCTGGTTGTGAAATGCTTTTATGATTCTTCACTGCCCCATCATTGGC TTGCTGGTAATTTTGCTCCGGTTCATGATGAGACTCCTCCTACTAAGAATCTTCCTGTCAGAGGGTTCCTACCGGATTGC TTCAATGGAGAGTTTGTCAGGGTGGGACCTAATCCGAAGTTTGCTCCTGTGGCTGGATATCACTGGTTTGATGGAGATGG AATGATTCATGGTTTGCGAATCAAAGATGGAAAAGCCTCATATGTTTCTCGTTTTGTGAGAACTTCTCGTCTTAAACAAG AAGAATACTTTGGAGGCTCTAAATTTATGAAGATTGGAGATCTCAAGGGTCTATTTGGACTGCTAATGGTTAACATGCAA ATGTTGAGAACTAAATTGAAAGTACTGGATGGTTCATATGGACATGGAACAGCTAATACAGCTCTTGTTTATCACCATGG GAAGCTTCTAGCACTCTCGGAAGGAGATAAACCTTATGCTATTAAAGTTTTTGAAGATGGTGATTTGCAGACACTTGGCC TGCTAGATTATGACAAGAGATTGGACCATTCCTTCACTGCTCATCCAAAAGTTGACCCATTTTCTGGGGAGATGTTTACA TTTGGTTATTCACATACACCGCCATATGTCACATACAGAGTAATTTCAAAGGATGGTTTTATGCATGACCCTGTACCTAT AACAGTATCAGACCCCATCATGATGCATGATTTTGCCATCACAGAGAACTACGCCATCTTTATGGATCTTCCTCTGTACT TTAGACCAAAGGAAATGGTGAAAAATAAAACACTGATATTCTCCTTTGATTCAACCAAGAAAGCTCGCTTTGGTGTCCTA CCTCGGTATGCTAAGGATGATAAGCAAATTAGATGGTTTGAGCTACCAAACTGCTTCATATTCCACAATGCCAATGCTTG GGAGGAGGAGGATGAAGTTGTTTTGATCACATGTCGCCTTGAGAATCCAGAGTTGGACAATGTTGGCGGGGCTGTCAAGG AAAAGCTCGAAAGTTTCTCAAATGAGCTGTATGAAATGAGGTTTAACATGAAAACGGGTGAAGCTTCTCAACAGAAACTA TCAGCATCTACAGTAGATTTTCCTAGGGTGAATGAAAGCTACACTGGCAGGAAACAGCGATATGTATATGGAACTATATT AGACAGCATTGCAAAAGTTACCGGGGTTGTTAAATTTGATTTGCATGCCAAACCGGATTCTGGAAAAACAAAGCTTGAAG TTGGAGGAAATGTTCAGGGTCTCTATGACTTGGGACCAGGGAAGTTTGGATCTGAGGCTGTTTATGTCCCACGTGTCCCT GGCACCGATTCTGAAGAAGATGATGGATACTTGATCCTATTTGCACATGATGAGAATACCGGCAAATCATTCGTGCATGT CATCGATGCAAAAACAATGTCAGCAGATCCTATTGCAGTTGTAGAATTGCCGCATAGAGTTCCATATGGTTTCCACGCCT TCTTTGTGACAGAGAAGTTCTAA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0061400.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEDEKKNTTGTGAGGLPVKVEPKPSNGFTSKVIDLLEKLVVKCFYDSSLPHHWLAGNFAPVHDETPPTKNLPVRGFLPDC FNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKASYVSRFVRTSRLKQEEYFGGSKFMKIGDLKGLFGLLMVNMQ MLRTKLKVLDGSYGHGTANTALVYHHGKLLALSEGDKPYAIKVFEDGDLQTLGLLDYDKRLDHSFTAHPKVDPFSGEMFT FGYSHTPPYVTYRVISKDGFMHDPVPITVSDPIMMHDFAITENYAIFMDLPLYFRPKEMVKNKTLIFSFDSTKKARFGVL PRYAKDDKQIRWFELPNCFIFHNANAWEEEDEVVLITCRLENPELDNVGGAVKEKLESFSNELYEMRFNMKTGEASQQKL SASTVDFPRVNESYTGRKQRYVYGTILDSIAKVTGVVKFDLHAKPDSGKTKLEVGGNVQGLYDLGPGKFGSEAVYVPRVP GTDSEEDDGYLILFAHDENTGKSFVHVIDAKTMSADPIAVVELPHRVPYGFHAFFVTEKF

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	21	21	-	–
PANTHER	PTHR10543:SF100 View details on PTHR10543:SF100 Search for proteins/transripts with this domain View external data on PTHR10543:SF100	18	539	522	1.4E-295	–
PANTHER	PTHR10543 View details on PTHR10543 Search for proteins/transripts with this domain View external data on PTHR10543	18	539	522	1.4E-295	IPR004294 Show description in modal box View details on IPR004294 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03055 View details on PF03055 Search for proteins/transripts with this domain View external data on PF03055	58	536	479	2.4E-127	IPR004294 Show description in modal box View details on IPR004294 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016702 View details of GO:0016702 AmiGO InterPro QuickGO	Molecular function	Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from one donor, and two oxygen atoms is incorporated into a donor.	Subterm of View details of GO:0016701 View details of GO:0051213
GO:0055114 View details of GO:0055114 AmiGO InterPro QuickGO	Biological process	Oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.	Subterm of View details of GO:0008152

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0061400.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi3g1v0061400.5