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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0063000 |
| Transcript ID | LotjaGi3g1v0063000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squamosa promoter-binding-like protein; TAIR: AT1G02065.1 squamosa promoter binding protein-like 8; Swiss-Prot: sp|Q8GXL3|SPL8_ARATH Squamosa promoter-binding-like protein 8; TrEMBL-Plants: tr|V7ALZ4|V7ALZ4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0063000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:6663391..6667099) extracted from Lotus japonicus Gifu genome v1.2.
TACCCACTGTCTGCACAAGCCGCCTCATAAACTCAGTTTCCCTCAAACCCACACTCACAGTCGCAAACCACACACACTCT CACTCAAACACTCACTCAGTCACCTAGAGAGAGAGAGAATTAAGTATAGCAAAAAAGAGTAACTTTTATTGCTAGAGAGA GAGAAATGGGGAAGGGGACAAAAGGGTTCAGCTTTTTGAAGGTGAAAGTGAGATCTTTTAAGCGCACATCCATTTAACAG AGGAAAGAGTAGACTCTGAGACACACAACAAGCATTCATTCAGAGAAGAAAGAGAGAGAAAAAAAAGACTTAATCAACAC GCCATTAGAGTGTGGTCTGTGAAAAGAAGCAAGTAGCCATAGCTAGTGGATACAAACACAGAGTGAGAGAGAACCATATC TTCTTCCTTCATCATATCATACTAGGGCTTTCTGTATTTGCAATCAAATTCCATGAGTTTGAGACTTCTCCAAAAACCCT TCAAAACCCACAACAGTAATCACCTCAAAAACCATAAAATTTACATTTTCTTTACTTTTCTTCTCTATTTTTCTTACTAA CTCACTCGTGTGTAACTTGATTTTCTTACAGGTACTGTGCACTTGCAAGATATAGAAAGTGACAGAGACATGTTGGACTA TGAGTGGGGAAACCCATCATCCATAATGCTCACCGGTGGAAATGAAGACGGCGGCGGCACCACCGCTGTCTCCGATCAAG CCCACCGACAAATGTTCGACCACTACGCCTCTCACACCCTTCTCACCGACCACTTCCTCCACGGGCCTGGCCCCACAAAC ACACCTGATTTCACTCACCAGAACCACCACCTCCAGTTCAACTCATCACAAGCCCAAGCCCAGCACCACCATGTCTCTCA CTCTCACACCTTCTTCGACCCACGCGCCTTCCACGGCGGCGCGTCCTCCACCTCCTATCCTCCGCCTCAGCCACCCCCTA TGCTCTCCCTTGACCCTCTTCCGCCTCACGCTGGACATGGACCGGGGTACGTCCTCATGCCGAAGTCTGAGGACGTCGGC CGGCCCATAGACTTCGTGGGGTCGCGAATTGGGCTCAATCTCGGCGGCCGGACTTACTTCTCGTCGTCTGAGGATGACCT TGTAAGCCGCCTCTACCGCCGGTCTAGACCGGGCGAACCTGGCTCGACCATGTCTTCCAACAACTCGCCCAGGTGCCAGG CTGAGGGATGCAATGCTGATCTGTCTCAGGCCAAGCACTACCACCGCCGCCACAAGGTTTGCGAGTTTCACTCCAAGGCC GCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGTCAACAATGCAGCAGGTTGTTGTTGTTCATAATTACATGAAT GCCCCTTCAGAACTCAATCATTGACTCTACATCCTCCTAGCTGCCCTTCACCCCAAGGGCAATTTCGTCCTTCTCCCAAC CTTCCTCTTCGCCTTAAGTTCAATTTCATATATAAAAACAAGTTTAGTTTAACTAATTATCCGAAAGGTTTAGCACAGAT GATAGATAGTTGTTGTCCTTAACCATGTTCAGGAATCAATTCATGAACGATGCAAATAGAGCTTCAGGACTAGTCTCATA ACTTTCGGCTATGAGATATGCTTAGAAAAAAAAAGTTTAGTTTGATTAATTTGAGTTTAGTCAAATGAAAATGTTTTTGA AATAGTGGGAAGATTCTTGATATTTGGATGTGGATTTGGGGCTTCAAGTTTCAACAACCCTTGTGCAACATGGGCAAGCG TGCATTAAGCACAACAAAAACAGCGTTGTTCTCCGCGTAGTGAACACTGAACAGAGTGATTATTTCTTCACAGAAACCTT GGAGGCAATGAAGGTCGGGGATGAAAGGACGAAATTGCCCTTGGGGGATTGTTGATAATGATTGAGTTGATCGTACATGG GGAAATCCCGAGGGCATTTGCGTCCCTTCAGTGTTTCTTTGTTCACTCTTACTCCACTTGCAGTTTTTTTCTACTTACGT GCTGCATTGTTTTGCTCTTTTTAGTTAGTACCATTAAAATACAACAGCAGCTGCATATATATTCTGTCAAGAAATTATTA ATTGTTGATTTTTTAATTTTATTTTGACATGCAGGTTTCATCTACTTTCTGAGTTTGATAATGGAAAACGTAGCTGCAGG AAGAGACTAGCTGATCACAATCGTCGCAGAAGAAAAACTCAGCAGTCAACTCAAGAAATTCAGAAATCTACTACTGCTCT GGATAACATTGCAAGTACTGACCCCTTCTCTTAAATATAAATTATTTTCTATTCATCTAAGTCTCAGTATATTAAAGTAT TAATTTTTAGTTTCAAAAAAAAAAGTATTAATTTTCATTATATATCACTGATAACCATACAGCGAAATGGAAAGAAAAAA ATCTTAAATTATATCTTATCAACTGAAAATAAAGTGGTTAGCTTTCAATTGGCAAAGGGAGCTATTACTTATACTCTATT CCTTTCAAAATAGTTTTCTTAATATCAATATATGGAATTAACTTTGTTAGCTTTTTAAAATATGTTTTTAATTTTCTAAT TTTACCTTTTAAAGTGTATTTTATCTTCTCTCATTTATTTTTCTTATATGGACATTCTATGGAAAAAAAAAATTAATTAA TGCTCATGAAGATTTGAAACGGCCTGAGTAAACCTCTAAGTAAACAGTTAATTTGAAACGGCGTGAGTAAATCATAAAGA TTTTTATGATATATATTTTTTGTTTATAGAAGAAAAAAATTCTCTTTAATTTTTCATTATTTGCAGAGAAAAATTGTTCC TTTAATTTCTTGCAGGGTCCCCTGCTGACTCCGGAACTCAACCATCATCATCGGTGACTGTGGCAGTGTCACCGCCGGAT TATTTTCGGCCGAGGCCATATAACCAAAGCACAAGCCCTTCAAATTCAAGCTCACTGTTTTTCTCAAGCGGGTAGTTCAT CATCATGTAGGAGAGCAGTACTTAACTTGCATGGAGGAGTGTTCAGCAATAATACATAGTGAACTTCCATTTGTAACTTT TCTCCCAGATTTAATTTTCAAAGTTAGCTTTTTAATCTCCTGTTATGAATTTGCTAGAATTAATTGTGATTTTCAAACCA TGTATGTTAATTTCTTTTTATGTTCTATATAAAACTCTAGTGCCCTATAATTGTTGGGTCTTTAATTGGGTACTAGTAGG GTAGCAAATGGGATTGTGTAATTGGCAATTGCTCTTTTCTACTTTATGGTGACCAGTTCAGCTTTTACTGCTGTGAATTT TAGTTGTGGTAAACCGTAGAAGGGGAAATTGGCCCCCTCTGTTTGGACTTTCCCGGAAATAGCACCTGTTTGGGTCTCAG AGTGTTGTGGCAGCTGAACACGGGTGTTCAGGCCCTATACACATTCATTTTCAGGCATTGAATTATTTTCCTTTTGTCTG GTCCTGGAATTTTTCCTAAAAAATGAAGGGATCATGTAAATTATGAATATTCAACAAAACCTTTAAATTTATGGGTATGC CTAACTCATTCTCAACCTCTACCTTGGTATTGAAACCCGTTTGAATAGCTTATTTGGTCTTATCTTATTTCTCATATGTT TATGTAAATGTTTGAGAGTTCTTATGTAAATAGTTCATGATCTATTTATAAGCTGTTTTGATATTTTTTTGTAAGCTATT CAAATTTGCTTGTGAATAAAGGATTATGC
CDS sequence (LotjaGi3g1v0063000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTTGAGACTTCTCCAAAAACCCTTCAAAACCCACAACAGTACTGTGCACTTGCAAGATATAGAAAGTGACAGAGA CATGTTGGACTATGAGTGGGGAAACCCATCATCCATAATGCTCACCGGTGGAAATGAAGACGGCGGCGGCACCACCGCTG TCTCCGATCAAGCCCACCGACAAATGTTCGACCACTACGCCTCTCACACCCTTCTCACCGACCACTTCCTCCACGGGCCT GGCCCCACAAACACACCTGATTTCACTCACCAGAACCACCACCTCCAGTTCAACTCATCACAAGCCCAAGCCCAGCACCA CCATGTCTCTCACTCTCACACCTTCTTCGACCCACGCGCCTTCCACGGCGGCGCGTCCTCCACCTCCTATCCTCCGCCTC AGCCACCCCCTATGCTCTCCCTTGACCCTCTTCCGCCTCACGCTGGACATGGACCGGGGTACGTCCTCATGCCGAAGTCT GAGGACGTCGGCCGGCCCATAGACTTCGTGGGGTCGCGAATTGGGCTCAATCTCGGCGGCCGGACTTACTTCTCGTCGTC TGAGGATGACCTTGTAAGCCGCCTCTACCGCCGGTCTAGACCGGGCGAACCTGGCTCGACCATGTCTTCCAACAACTCGC CCAGGTGCCAGGCTGAGGGATGCAATGCTGATCTGTCTCAGGCCAAGCACTACCACCGCCGCCACAAGGTTTGCGAGTTT CACTCCAAGGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGTCAACAATGCAGCAGGTTTCATCTACTTTC TGAGTTTGATAATGGAAAACGTAGCTGCAGGAAGAGACTAGCTGATCACAATCGTCGCAGAAGAAAAACTCAGCAGTCAA CTCAAGAAATTCAGAAATCTACTACTGCTCTGGATAACATTGCAAGGTCCCCTGCTGACTCCGGAACTCAACCATCATCA TCGGTGACTGTGGCAGTGTCACCGCCGGATTATTTTCGGCCGAGGCCATATAACCAAAGCACAAGCCCTTCAAATTCAAG CTCACTGTTTTTCTCAAGCGGGTAG
Protein sequence (LotjaGi3g1v0063000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLRLLQKPFKTHNSTVHLQDIESDRDMLDYEWGNPSSIMLTGGNEDGGGTTAVSDQAHRQMFDHYASHTLLTDHFLHGP GPTNTPDFTHQNHHLQFNSSQAQAQHHHVSHSHTFFDPRAFHGGASSTSYPPPQPPPMLSLDPLPPHAGHGPGYVLMPKS EDVGRPIDFVGSRIGLNLGGRTYFSSSEDDLVSRLYRRSRPGEPGSTMSSNNSPRCQAEGCNADLSQAKHYHRRHKVCEF HSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQSTQEIQKSTTALDNIARSPADSGTQPSS SVTVAVSPPDYFRPRPYNQSTSPSNSSSLFFSSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 55 | 316 | 262 | 2.0E-80 | – | |
| PANTHER | 55 | 316 | 262 | 2.0E-80 | – | |
| MobiDBLite | 105 | 153 | 49 | - | – | |
| MobiDBLite | 129 | 143 | 15 | - | – | |
| MobiDBLite | 197 | 216 | 20 | - | – | |
| Gene3D | 206 | 277 | 72 | 6.0E-37 | ||
| ProSiteProfiles | 213 | 290 | 78 | 32.376 | ||
| SUPERFAMILY | 214 | 294 | 81 | 1.07E-38 | ||
| Pfam | 216 | 289 | 74 | 3.5E-31 | ||
| MobiDBLite | 282 | 354 | 73 | - | – | |
| MobiDBLite | 294 | 326 | 33 | - | – | |
| MobiDBLite | 334 | 354 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi3g1v0063000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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