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LotjaGi3g1v0066800.1

Overview

Field Value
Gene ID LotjaGi3g1v0066800
Transcript ID LotjaGi3g1v0066800.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT2G44840.1 ethylene-responsive element binding factor 13; Swiss-Prot: sp|Q8L9K1|ERF99_ARATH Ethylene-responsive transcription factor 13; TrEMBL-Plants: tr|A0A140WWE9|A0A140WWE9_LOTCO AP2/ERF; Found in the gene: LotjaGi3g1v0066800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:7197993..7198736) extracted from Lotus japonicus Gifu genome v1.2.

CACACATTACTGGAACAGCAATATGAATGCCGCATCCGACCACTTTGAAGCCATGGCAACGACGTCATTTCAGGACACAC AGGCTCCGGCAGTAGGGGTGTTCTCCCGGAATCCGAGCTTCAAGAGCATCTTCTTGGCGGATAACTGGGCAGAGCTGCCA TTGAAGGAGGATGATGCCGACGACATGGTCATCTACAGCGCGTTGAGAGAGGCTGCCACCACTGGTTGGCTACCCACCAA CAATAACAATGGGGTGATGGAAGTTAACACGGTTGCGAAGATGGAAAATGAGAGTGAAAACTGCAGCAGTACAGGGGCAC GTGGATCACGCACCCCCACGAAGAGAGGATGGAGCTACCGGGGCGTGCGGAAGAGACCGTGGGGCAAGTATGCCGCAGAG ATAAGAGACCCCAAGAAGAACGGCTCAAGGGTGTGGCTTGGGACTTATGAAACAGCGGAGGATGCAGCTTTGGCTTATGA TCGAGCCGCGTTCAAAATGCGCGGCTCAAAAGCTAAGCTAAATTTTCCACACTTGATTGGCTCAATATAATCTCAGCCCG TTAGAGGCATCCCCATGTCCGACACTTGTTGGTGAGATGTATGTTACCGTGCTGAGTTAAAATTTGATAGCCGCACTCTA GTTGAAGAGTTTTGATTCTTTCATACTTTTCTTTCATCTCATTTTCACTTATTTTTATCTCTCTTAACTTTGTATCGTGT CCTTTCATTCTCTCTTTTCTTTAT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0066800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATGCCGCATCCGACCACTTTGAAGCCATGGCAACGACGTCATTTCAGGACACACAGGCTCCGGCAGTAGGGGTGTT CTCCCGGAATCCGAGCTTCAAGAGCATCTTCTTGGCGGATAACTGGGCAGAGCTGCCATTGAAGGAGGATGATGCCGACG ACATGGTCATCTACAGCGCGTTGAGAGAGGCTGCCACCACTGGTTGGCTACCCACCAACAATAACAATGGGGTGATGGAA GTTAACACGGTTGCGAAGATGGAAAATGAGAGTGAAAACTGCAGCAGTACAGGGGCACGTGGATCACGCACCCCCACGAA GAGAGGATGGAGCTACCGGGGCGTGCGGAAGAGACCGTGGGGCAAGTATGCCGCAGAGATAAGAGACCCCAAGAAGAACG GCTCAAGGGTGTGGCTTGGGACTTATGAAACAGCGGAGGATGCAGCTTTGGCTTATGATCGAGCCGCGTTCAAAATGCGC GGCTCAAAAGCTAAGCTAAATTTTCCACACTTGATTGGCTCAATATAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0066800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNAASDHFEAMATTSFQDTQAPAVGVFSRNPSFKSIFLADNWAELPLKEDDADDMVIYSALREAATTGWLPTNNNNGVME VNTVAKMENESENCSSTGARGSRTPTKRGWSYRGVRKRPWGKYAAEIRDPKKNGSRVWLGTYETAEDAALAYDRAAFKMR GSKAKLNFPHLIGSI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31190:SF104
11 174 164 2.7E-69 –
PANTHER
PTHR31190
11 174 164 2.7E-69 –
MobiDBLite
mobidb-lite
91 111 21 - –
SMART
SM00380
111 175 65 1.5E-39
IPR001471
Gene3D
G3DSA:3.30.730.10
111 171 61 4.2E-33
IPR036955
ProSiteProfiles
PS51032
111 169 59 23.933
IPR001471
PRINTS
PR00367
112 123 12 6.2E-11
IPR001471
Pfam
PF00847
112 161 50 8.9E-14
IPR001471
SUPERFAMILY
SSF54171
112 170 59 1.96E-23
IPR016177
CDD
cd00018
112 171 60 1.07193E-30
IPR001471
PRINTS
PR00367
135 151 17 6.2E-11
IPR001471

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0066800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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