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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0074500 |
| Transcript ID | LotjaGi3g1v0074500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polygalacturonase; TAIR: AT3G59850.2 Pectin lyase-like superfamily protein; Swiss-Prot: sp|P48979|PGLR_PRUPE Polygalacturonase; TrEMBL-Plants: tr|I1JMF5|I1JMF5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0074500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8196179..8198213) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCACAACTAAGTCCAATTATCATTCTAGTTGTGTGTGCTTTCTTCATATTTAGATCAACCATAGCACTAGAGATAAC TCTCAATGTTGTCAATTTTGGGGCGAAACCAGATGGTGAAACAGACTCCACAAAAGCATTCCTTAGCGCATGGGCAAGAG CATGCAGCAACACCAGCTACCATTTATGTGCCGCTAGGAAGGTTCTTAGTTGGAAATGCAGTGTTCAAAGGGCAGTGCAG GAACAAGGGCATCACGGTTCGCATTGATGGTGTGCTAGTTGCACCTTCGAACTATGATGTTATTGGAAATGAAGGAAACT GGTTGTTTTTTGATGATGTTGATGGAGTTTCAATTGTTGGTGGTGTGCTTGATGGGCAAGGCACTGGTCTCTGGGATTGT AAGAGGTCTGGTGGAAAGAGTTGCCCAACTGGTGCTACGGTATATCATCATATCATATCTATCACTTATTCATCTTCTCA TTATATCTCCATCTAGATATTTACCCCATCTATGTGTCCATTGACATACATGCATGCCTTTTACTCTTGCAATTGGATGA GCTTTATTTAAGGTGTTTTTCTTATATGTATTAATATATAGCATTTTCTTTCTTTCTTCCTTTGGCAATTTGGACTAAAT AATTTGGAAAGAACTAGATTTCATATACAAATTATTTGGGTTAGTCATTAAAGTAGCAATTAGCATGGTAGCATATTTAT ATTATGTTTCATCTGCCTTAAAATCAACAACCTCAATTCTCATATATACGAGTCACCTCTATTCACATATATATATACGA GTCCGTACATCCAATCACTATCAAACATCCATTTTTGTAATGAGATATTTTACCATCATAAATTTCAAAATTTTACTTTC CACTTTAACTTTAACAACAGTGAGTGTTTGGAGTGGTCTCTACTGTTCCGTAGTTATTTATCATTTTCTTAAATCAATGC ACAACAAAACTCTTTCAATAAGCTAGGTTTTTTGTTGATTCATGTCATATGGTAGTGAAAACTAATTATTTTCCTTTTCC TTGTTACAGAACTTAAGATTTACCAACTCCAACAATATTGCTATCAATGGGGTGACCTCTCTGAGCAGCCAAATGTTCCA CATAGTTATAGACCGATGCCACAATGTCAAAGTACAAGGTGTGAAGGTATCAGCTGCAGGAAACAGTCCAAACACTGATG GCATTCATGTTCAACTCTCATCAAGTGTCACCATCCTCAGCTCCACCATAGCAACAGGTGATGACTGCATCTCAATCGGT CCCGGAACAACTAACTTGTGGATAGAAAACATCGCTTGTGGACCAGGTCATGGAATCAGGTAACCTATATGCAATGTGTT TCTTAGACAATTTAATTAAACGCTTATAGCAATATATAAGTTTTTATTCATAATAACAGCTTAATTATATGTATAATGAT ACTCAAATTATGTGTTTTTTTTCCTTACATGTGTTCAATTTGTGGCAGTGTTGGAAGTTTGGGGAAGGAAGTTGAAGAGC TTGGTGTGCAAAATGTGACAGTTAAAACAGTTAAATTTACAGGAACTAAAAATGGTGTGCGAATTAAGTCTTGGGGCAGA CCTAGTGATGGGTTCGCAAGGGACATCCTTTTCCAACATGTTACCATGCTTAATGTCCAAAATCCCATTGTGATAGACCA AAATTATTGCCCCAATGAGAAGAATTGTCCAGGTCAGGTAAGAAAATTCATCTTCTAGTTTTAGTTAAACTATATATTGT CAATTGTCAACATGAGCTAATTGGATTCTCTTTTTATATTGATGACAAACAAGCAGGTTTCTGGGGTGAAAATTAGCAAT GTCATGTACCAAGATATCCATGGAAGTTCTGCTACAGAAGTTGCAGTTAAATTAGATTGTAGTCCGAATAATCCATGCAC TGGAATAAGTTTGGAAGATGTGGATCTTACTTTTGAAAACAAACAAGCAGAAGCTTCATGCAATCATGCTGGAGGAGCCA CATCTGGTGTAGTTCATCCCAACAATTGTTTCTAG
CDS sequence (LotjaGi3g1v0074500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTCAATTTTGGGGCGAAACCAGATGGTGAAACAGACTCCACAAAAGCATTCCTTAGCGCATGGGCAAGAGCATGC AGCAACACCAGCTACCATTTATGTGCCGCTAGGAAGGTTCTTAGTTGGAAATGCAGTGTTCAAAGGGCAGTGCAGGAACA AGGGCATCACGGTTCGCATTGATGGTGTGCTAGTTGCACCTTCGAACTATGATGTTATTGGAAATGAAGGAAACTGGTTG TTTTTTGATGATGTTGATGGAGTTTCAATTGTTGGTGGTGTGCTTGATGGGCAAGGCACTGGTCTCTGGGATTGTAAGAG GTCTGGTGGAAAGAGTTGCCCAACTGGTGCTACGAACTTAAGATTTACCAACTCCAACAATATTGCTATCAATGGGGTGA CCTCTCTGAGCAGCCAAATGTTCCACATAGTTATAGACCGATGCCACAATGTCAAAGTACAAGGTGTGAAGGTATCAGCT GCAGGAAACAGTCCAAACACTGATGGCATTCATGTTCAACTCTCATCAAGTGTCACCATCCTCAGCTCCACCATAGCAAC AGGTGATGACTGCATCTCAATCGGTCCCGGAACAACTAACTTGTGGATAGAAAACATCGCTTGTGGACCAGGTCATGGAA TCAGTGTTGGAAGTTTGGGGAAGGAAGTTGAAGAGCTTGGTGTGCAAAATGTGACAGTTAAAACAGTTAAATTTACAGGA ACTAAAAATGGTGTGCGAATTAAGTCTTGGGGCAGACCTAGTGATGGGTTCGCAAGGGACATCCTTTTCCAACATGTTAC CATGCTTAATGTCCAAAATCCCATTGTGATAGACCAAAATTATTGCCCCAATGAGAAGAATTGTCCAGGTCAGGTTTCTG GGGTGAAAATTAGCAATGTCATGTACCAAGATATCCATGGAAGTTCTGCTACAGAAGTTGCAGTTAAATTAGATTGTAGT CCGAATAATCCATGCACTGGAATAAGTTTGGAAGATGTGGATCTTACTTTTGAAAACAAACAAGCAGAAGCTTCATGCAA TCATGCTGGAGGAGCCACATCTGGTGTAGTTCATCCCAACAATTGTTTCTAG
Protein sequence (LotjaGi3g1v0074500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSILGRNQMVKQTPQKHSLAHGQEHAATPATIYVPLGRFLVGNAVFKGQCRNKGITVRIDGVLVAPSNYDVIGNEGNWL FFDDVDGVSIVGGVLDGQGTGLWDCKRSGGKSCPTGATNLRFTNSNNIAINGVTSLSSQMFHIVIDRCHNVKVQGVKVSA AGNSPNTDGIHVQLSSSVTILSSTIATGDDCISIGPGTTNLWIENIACGPGHGISVGSLGKEVEELGVQNVTVKTVKFTG TKNGVRIKSWGRPSDGFARDILFQHVTMLNVQNPIVIDQNYCPNEKNCPGQVSGVKISNVMYQDIHGSSATEVAVKLDCS PNNPCTGISLEDVDLTFENKQAEASCNHAGGATSGVVHPNNCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 20 | 362 | 343 | 1.3E-101 | ||
| SUPERFAMILY | 25 | 363 | 339 | 2.29E-103 | ||
| PANTHER | 27 | 363 | 337 | 1.0E-180 | – | |
| PANTHER | 27 | 363 | 337 | 1.0E-180 | – | |
| Pfam | 29 | 347 | 319 | 1.4E-82 | ||
| SMART | 148 | 174 | 27 | 170.0 | ||
| SMART | 175 | 196 | 22 | 850.0 | ||
| SMART | 198 | 218 | 21 | 3100.0 | ||
| ProSitePatterns | 205 | 218 | 14 | - | ||
| SMART | 228 | 249 | 22 | 60.0 | ||
| SMART | 258 | 279 | 22 | 4000.0 | ||
| SMART | 292 | 332 | 41 | 5800.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0074500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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