Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0076700 |
| Transcript ID | LotjaGi3g1v0076700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fiber protein Fb34; TAIR: AT4G27435.1 fiber (DUF1218); Swiss-Prot: sp|A6LGF1|SYY_PARD8 Tyrosine--tRNA ligase; TrEMBL-Plants: tr|I3S0C4|I3S0C4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0076700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8409987..8414512) extracted from Lotus japonicus Gifu genome v1.2.
CTTGCATTCTCACGCATCCAGCTTATAGTAGCAACATGCAGTGAAGAGAACACCAAACAACACATTGCAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGATCTTCACTACCTTCTCTTCTTCTCTTCTTCCATGGCTTCCAAGCTGGTTCTCATCATTGTC TTCGTTTTTGACTTGATCGCTTTTGGATTAGCAGTTGCTGCTGAACAGAGAAGAAGCACTGTAAGTAGTTGTAGTATTCA CATTTCAATTCAATTCACAGTTTCCCTTAATTTTCACCCCAATTATCTCACTGTTCTTAGTTTCTCTGAAGCAAAAATAG GAATCTGTGATAAAACTTGGGAATTCAATTCAATGTTGTATTTGTGTTTATCATGTATTTGCATAAATGCTTCAATGAAC TGTGCATCTTGTTTATTTGTTGAACTCCCAATTTAACCTTATATTAGCATACCCATTTGGCATATCTATCTGTTTCTTGT TGAAAAATGTGTTCTTTCTATAATACTCATTGTGATGTGAATATTAGTTATATTACTGTTCAATTTACAAAGGAGAAGTG TTATCTCTGTAGTGAAACATTAGATCTGTTATATTCCAATGTGTGAGGGATAAAATAAGATAAGATTTTAGCTTGGAAAG TTATCAAATTTAGGCTAATAGCATGATTCAGAATTCTATGAAGGAAATTCAATTTGTTTTGGTTCAAAGGTGCAAGATGT GTTTAATCTGTCTCAGATATGTACTTGTTCATTTACTTTGCCCCATTTTGAATTTTTGAAGCAAGGTGTTTCACTAATGG CAACTTTTGGTTGCTTTAGAACTGAAAGTCATGACATTTTCAATCCTGATCCATGTAACTCATGGTTGAAGTGAATTTTT TTAGCAATTTCCAAAGAAATTTTTCCTTAAGTGCTTATGAAGATTTGATTTTGATGGTAATCCAACTACTAGATTAGGAG ATTTATAATCATAATTCTTCATGCTGAATTGATAAATTGCCTTTTTTTTTTCTTCTTGTTACATTTATGAGCTTTGAACC CGTAACCTCTTGTATATTATCCAATCCCCTTAGTACTAACACACCCCTTGTGACTTATGAAGTGACTTTTTATGTTCAGG ATGCAATTAGTTTTGACTTTTGATCTCCTACTTCACTGAATATTTATCTGTATTCATTTTCAGGCTAAAATTGTTCTGGA CAGTGAAGCGAATTATAATTACTGTGTCTATAATTCTGATATCGCAACTGGCTATGGTGTGGGAGCATTTCTGTTCCTCA TGGTTAGTCAAATCCTCATAATGGTGGCAAGTCGATGCTTCTGCTGCGGGAAGCCTCTCAAACCCGGAGGTTCTAGGGCC TGTGCAGTTATCCTTTTCATAATCTGCTGGTATGTTACCAATTTTTCATTCTTCACTGACAAGTAACATTTTTTTATCTT GCAAAGCTGATACAACCTTGTTCAATTTCCGGTGCTTACTTGGTTTTTTTTTTGTTGTATTGAACTTGCAACACTTGTTT TGCATCTTCCTTTCCAGGGTGTTTTTCGTCATAGCTGAGGTGTGCTTGTTGGCTGGATCAGTGGAAAACGCCTATCACAC CAAGTACAGGACCCTCTTTGTGAAGGACAATCCCCCTTCTTGCGAGACAGTTAGGAAGGGAGTTTTCGCTGCTGGTGCTG CTTTTGTTTTCTTCACTGCCATAATTTCTGAATTCTACTATATCAACTACTCAAGTGCCAGGGAAAGCTTCCAACCATAC CTTGGTGGTGAGACCGGTGTCGGCATGGGAGCCTACAAATGAGATTGTCAGTTAAGAATTTCACTGCCAACCAACCTTAC TACTGTCTGAGAAGTGACTATATCTAGATTCTGGATTCTGCAGCACATTTGCTTTTTCCATTCCCTGGATTCAGTTGAAT ATCTTGTATTTACAGTTTAGCTACTTTGCTAGAATGAATACGTTATACCTTAGTAATTTTTGTTGTTGTTACCTGTTGTG GTTTTCTACAGGTGATTGATTCATTACTTCTTACATTTTTGGGGTTCCTTGTGATATATAATACATATCAATAAGAAAAT AACTTTCTTGCATTCGTTGGACACTTGATTTGTATTGTTATCTGCACATTTGTAAAATCTAGTTCTTCCTTTCAGTATGT ATCAGGGTCAATTTTGATAATGTTTTTATTAGTCGATGGTGATGATAGTTGCAGGGAAAGTGTTTTGAGCGTGTACATTT TATGCCTATGTGGCCTGACTGCCAAACAAAAAGGTAATTTAAACCTAAATCTCCTTCTCTAAGCCGATCAAGAGAATGAT ATGTTTGATCACTTGTTGTTCCTCAATCAAGTATATTAATTAAAAGTTTGTCCTCATCAGGAGGATTGCTCAATGGAAAA TATTTTGGTCTAAATATGATATCATCTATGTTACTCAAAAGGCAATCAAAGGTAGCAGCACCCTTGCAGATAAAGCCCAC CAGCCTGTGGATAATTATAAGTCAATTCAGCATGACTTTCCAGATGAAGATAAAATGGGACTACTCAGGGGAGCAAGAGA AGTGGATTTTATTGCTTGATGGAGCTTCCAATCCATAGGGGTATGGTATAAGAGCCATATTGATTTCCCCTAAGATTTAA TACACCCCAATAACTGCTAGACTTTGTTTTGAGTGTACGAAGCATGTGCCATGAGGATCAAAGCAGCCACATAATCGAAA GTCCAAAATGGTGTGCCTAGAGAGATTGGCATGGCATGCTCCCTTCCGCCTTGCACGGATATCGTACCTCAGTGCGCACT TCAACTAGAATCAGTCCTCCCAGTTTAAGTCAAAATACATTCATTAGGAATATTTTCGGAGATTAAACTGGAAGAAACAG AATGGGCCAATTTGATTAGTTAAATCTCATCGAAGGGAAGAACTAGCTTCCTTGTGCCATGACCAGCTGTATCAACGCAA GATGAAAAGAGCCCAGCCCATGAATACCCTTAGGAGTTTCAATAAGGATACTGGTTAGTATTAGTGCTAACAAATACTAG CACTCATTTTGAGATAAAATATTTGAACAACCGATCCATTCAAAATAATGAGTGTGGTTTTATGTTAGGGTAAATGGTCA CTTTGGTCCTTCAAAGTGTCCACCGACTTCATATTCGTCCCTGAATGAATTTTATCCATCCCGCGGTCCCCCAAAGTGGC TAATGCCAGTCAAATTGGTCCTTCTGTTAAAAAAAGTATAACGGACGTTAACAATTTCCGTTTTTATATTTTTTTTACCT AGGTGGAAATCATTAGTTTAAATTAAAAAAAACAAATTAACTAAAAAATTGATTAATTAAAAAAACTCAATTACAAATCA AAAACACAAAATCTCTCCTTCTTCTCATTTTCTTCATCATCTCCTTCTTCTTGAACATCTGGTCCCAATCTCTGAGGCAA AACAACAAACACTATCTCTTCAACAACATATTCATCCATGGTAACACTTTCACAACATGATTTGTTTGTTTAACAAAATA AAAACCCAGGAACGGAATGATTATGATGGATGAGAAAAAGCTTCGAACTCAACTTGACCCAATGAAACCACCCTGCAACT CAAAACAAATTACACAAGATTAGAGCAAAGTTTGCAACTTTCTGAAGTGAGCATTCAAAAAACGAAAATGGGTATCATAT TTGAGAAATTACTCTGTTTTCCTCTCCTTTGTTGCGATTTGCTCCTCCTCTTGTGCTTCCTACTGAAACTGTGAACTAGA TCTGCTCACGTTACCAGATCTGCTTTCTCTTTCTCGCATCTTCTCTATCGTCCTCACTTGATCCAGAGCAACCATTCCCA CTTCCCCTGTCATTGAACCGCCAAACAACAACCAACCTCACCTTCCATGAACCATCAATCACCACCATCGCTTCTTCCTC AGGAGAAATTGATCCCTGGCACAAAGCCTCAACCAAACCCTTCACCCAATCACAACCTTCCCCTTCATAAAACCACTTCA ACCCATAATCTCTGCCACAAACCTGAAGCCACCCAGCAAGCACTACCTTCAAACCAACAACCAAAAAACAACACCAACTC AAAACCTCCAACAACTGAAATCCTCCGCCACCGCAACCTAGCCATACCCAAAAACCCAGACCGAACCCAGGTCCACCTCC ACCCCCAACTCCCCACAGAAATCCCCCTCCATTCCCTTCACCCAGATCGAGTCATCATCCCCTTCACCCACTCTGACCTA GGTTCGTGTGCACAGTAAAAGATTTTATTGGATTGGAAATCTGGATTGAAGCTTCAAACCAAAAAAGGGAAAGATTGAAG CTTTTATGTGGGTTTGTAAATCTAGATTCAAATCCGTGGGTTTGAAAGTCTCATCAGGATGGCGAGAACTGCATTTCGGT GGGGGTGGAGAATGGGGTTTGTGGTGGGGTTTGATTATGATGGAAGGATTGGTGAAGATGATGAAGAAGATGAGAAAAAG AAGACAGAGAATGATGTTGGTGATTCTCATCAAGTTTAGTTTTTTT
CDS sequence (LotjaGi3g1v0076700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCAAGCTGGTTCTCATCATTGTCTTCGTTTTTGACTTGATCGCTTTTGGATTAGCAGTTGCTGCTGAACAGAG AAGAAGCACTGCTAAAATTGTTCTGGACAGTGAAGCGAATTATAATTACTGTGTCTATAATTCTGATATCGCAACTGGCT ATGGTGTGGGAGCATTTCTGTTCCTCATGGTTAGTCAAATCCTCATAATGGTGGCAAGTCGATGCTTCTGCTGCGGGAAG CCTCTCAAACCCGGAGGTTCTAGGGCCTGTGCAGTTATCCTTTTCATAATCTGCTGGGTGTTTTTCGTCATAGCTGAGGT GTGCTTGTTGGCTGGATCAGTGGAAAACGCCTATCACACCAAGTACAGGACCCTCTTTGTGAAGGACAATCCCCCTTCTT GCGAGACAGTTAGGAAGGGAGTTTTCGCTGCTGGTGCTGCTTTTGTTTTCTTCACTGCCATAATTTCTGAATTCTACTAT ATCAACTACTCAAGTGCCAGGGAAAGCTTCCAACCATACCTTGGTGGTGAGACCGGTGTCGGCATGGGAGCCTACAAATG A
Protein sequence (LotjaGi3g1v0076700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKLVLIIVFVFDLIAFGLAVAAEQRRSTAKIVLDSEANYNYCVYNSDIATGYGVGAFLFLMVSQILIMVASRCFCCGK PLKPGGSRACAVILFIICWVFFVIAEVCLLAGSVENAYHTKYRTLFVKDNPPSCETVRKGVFAAGAAFVFFTAIISEFYY INYSSARESFQPYLGGETGVGMGAYK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| PANTHER | 1 | 184 | 184 | 7.1E-95 | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 184 | 184 | 7.1E-95 | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 5 | 18 | 14 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 55 | 32 | - | – | |
| TMHMM | 50 | 72 | 23 | - | – | |
| Phobius | 56 | 77 | 22 | - | – | |
| Pfam | 58 | 154 | 97 | 2.2E-29 | ||
| Phobius | 78 | 88 | 11 | - | – | |
| Phobius | 89 | 112 | 24 | - | – | |
| TMHMM | 92 | 114 | 23 | - | – | |
| Phobius | 113 | 140 | 28 | - | – | |
| TMHMM | 141 | 163 | 23 | - | – | |
| Phobius | 141 | 161 | 21 | - | – | |
| Phobius | 162 | 186 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0076700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…