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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0077400 |
| Transcript ID | LotjaGi3g1v0077400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peroxisomal membrane (Mpv17/PMP22) family protein; TAIR: AT1G52870.2 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein; Swiss-Prot: sp|Q2KIY1|PXMP2_BOVIN Peroxisomal membrane protein 2; TrEMBL-Plants: tr|I1LUX5|I1LUX5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0077400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8538931..8546104) extracted from Lotus japonicus Gifu genome v1.2.
GGCCACCATTGGGCATTGCCAACATTTCACCGTCACCAATAACCAGCTACAACATCTTTATACCATGACTCACATCCTAC TTACTTAACCTACACCCTTTCATTCTCAACCAATCAGATCAAAAGTCAAAACTCAAAACACTGACTTGACCACAAGTCCA CCACACTTCACACAAACGCGACACACCGGATCATCAAACGACTATAAACGAACGCGTTTCGCAGCTCACCGAACTCGGAG AAGAAAACTCAGCAACTCAACCCGGCGACTCAGAACTCCGCGACGCGCCGCCATGGCGTCAGTCCACAGCGCCGTCGCTC CGCACAGCCTCTTGCCTTCAATTCCCAAACCGAAGACCCCTCACGCGAATGCGCAGAACTTTCCGGCGTTGAGATTTTCC CGGAAACCGATTTTCCCGGGAAACAAACTCTCAGTGGCGGCGAAATCGGCGGTGGAAGATGCCGACGTGGTATTGGTGCA AAGCAGCGATGTTACGGACCAGCAAGAGGGCGTAGTGGTGGTGAGCCGTGTGGAGATGGAAGGTGGTGATTTCGTAGCAA AGGAGGGGTTGTTATCGTTGGAAGGGTTTTCTTCTTCTTCTTCTTCTCCGGGTTTGGTTGGAAATGGGAGTGAGGAGAGC ATGGAGAAGCTGATTGATAGGACTATCAATGCTGCTATTGTTCTTGCGGCTGGTACTTTTGCTGTCACCAAGCTTCTTAC CATTGATAGTGATTACTGGCATGTAAGTAAAAGGAACTGAACAATGATTATCTGCTGTTATGTTCGTTTTCAAATGAATT TGGTTTTATTTGTGGAAAATTTGATATAGAAATGCTATCTTCAGTGCAAATTTTGTAAATTTTGAAGACTGCAATTGAGT GATAGTAACTCTTGGTGATTTAGTGGATGCATGATGGTTAATGGATTATTTTAGGAAGATTTTCATTGTTTTCCCATTGA AGCAAAAATATTATTTCTTGCTAATTTAAACAAGCTAGTTGCTAATTTAGATTGAAAATCGAGTTTGGATTGCTTGTCAA GAAGTTACTTATTGCATGTTTGTGTTGGCGTTAGAGCCGAGGCAAACGTTATTTCACGCATCTCAAGCATAGGAAGAAGC TATTATTTAACACGTTGAGTTTAACGTGGATCAGAAGTAGGATTTTGACGTGAATCTACGTTGAGTTCCACGGAACTCCC AACATGCATTAGTCACTGCAGATCTGTAGCAACTGCATAGATCTCAAGTATTAAAATTTGCTCTAAATTAATTAAAGTAT TAATAAATAAATTAGTTAAATTATTTTTTGTGGCAAGATAAATAAACTGCACACCCTGCACCGTCACGAATGAGGATCCT CTGCACTTACAAAACTAACTGCAGGGTGAGAAGTTCGTGATCTGGCCATTAGAATTATTTCAGTTATATTTTTGGTAACA TTTTACTAAATTCAAAACAAATTTTAATAATTAAGATCTCTGCAGTTGTTTTTGCAACTGCAGAAGATCGTGATCCGTGG ATTCCCTACTACAAGGAATTTGGATCGCTTGATAATTAAATTTACTCTGTACTGAAATCCCCCCCCCCCTCCTTTGGGTT GAGGATTTACGTATCTTCTGTGGCTTGCTTTTTTAACTCCATGTAGGGATGGACACTTTATGAGATTGTAAGATATGCCC CTCAGCACAACTGGACTGCTTATGAGGAAGCTCTTAAGACAAATCCAGTTTTCGCCAAGATGGTGATCAGTGGTGTTGTT TACTCTGTTGGGGACTGGATTGCACAGGTCAGTTTCTGTGTAGTTGTTGTACAGCTGAGTTTCAATTTAGTCCTAAAGTT AATCATTTTATTATGCATTGTATTTGTGGCTTATCTTTTTATTTATTTGTTTATTTTTATTTATCATTGTAGTGCTTTGA AGGAAAACCTCTCTTTGAGTTTGACCGTGCGCGGATGTTCAGATCAGGCCTTGTTGGTTTTACTCTACATGGCTCTCTTT CTCATTACTATTATCAGTTTTGCGAGGTAGACCATAATAATATGTTATTTTCCTTGTTCTGCTTGGTTCTTGAAATTTCT AACTTCATGGTGATATTTATTAAGTAGCTTTCTCATTTAACCAGGAGCTATTTCCTTACAAAGGATGGTGGGTAGTTCCT GTCAAAGTTGTCTTCGATCAAACTGCATGGTCGGCAGTTTGGAACAGTATCTATTATACAGTTGTAGGATTCCTGCGTTT TGATTCTCCGATCAATATTTTTAATGAATTGAGGGCAACATTTTTTCCCATGTTGACGGTACGTGAACCTTCCTTCCAGC TTTTCCTATTTCATATTTTGCATTAAAACAGTTCTTCTACTTTGAGAACCAGTGAACCACTAAATTATATCTTTTTGTTG AAATGAACATGTTCTAGTAGCTGAAATGATGTTTTTCTTTTGCTGTTGATAATGACACATCCCATTTTCTTGATTGTGTA GCATCTTCTAAAGGCATTTAGTTGTACTATCTCTTATATGAAATTCTACTAATTCATGCTAGATTGTCAACTTATAATAC TGCTATCTCTTGTCAGGAAACACTGTTAGTAATAATGTATCTTTAAACTTCTTGGTTTTGATGTTTTCTTAAATTTTCTT GCACAGGCAGGGTGGAAGCTGTGGCCATTTGCTCATCTCATTACTTACGGTGTAGTACCAGTTGAGCAAAGACTTCTTTG GGTGGATATGGTAGAGCTTATTTGGGTGACCATACTTTCAACGTACGTCTTTCTGGATTTATTTTGAAAAATCTGCGTAT TCTAATTTGAATATTAATAACTTCATGCTATACTTCTGGGACAAAATTTGATATTTCATTGCCTTTTTCATTTGCTTTTG AGGGATGAGTTTTATATATAAGTTTCCTTGTTGTAGAATTTGTAGAATGAAAAGCAGAAGAGGTGGAAGGTAGTGAATGT GTATTACGTGCTTACTGCACAGTGCACATTGGTCTTATTGCAAATATTTAAGATTGCTTAACAGCACCAACCAATTAGTT CTATACTACTTTCAAAAAAAAAAAAATAGTTCTATACTTTTGATTCCTAGGTTTTTTTGGGGGTGAGGGGGATTTTGTAT TACTTTCAAGGCTTTCAATTACCAAATTCACCTTTGCTTGTCAATGCCTACTTATGGAAATGCTGAGGCTCTAACATGGG TTTATGTGCTCTATAGATATTCAAATGAAAAATCAGAAGCAAGAAACTCTTCGGTACTTCCTGAAGTGACATCTACTACA TCTGTTCACCCTCCTGAGGTATGTGATAATTAATAATTATTATGTGCTAAATTTGTAAAAAAAAAGTGAAATAAAATTTA TATGCGTTCTGGATCCTTAAAATCATTTCTTATGTTTTCCAGGAGAAACGAGAAGAGTTATGACCAGAAACAGTGGGAGA AAATGGCTTTGCTCAATCAGATTGTTGAAATAGTATATAGCTCACAGAACCATGATTTGGACATAGATTTATAATGCAGA AAGTGGGAAATGCTGATTGTATATGTCTATATGTTGCATCCCTCGGAAATTCATGTATGTAAGTAACATGAACTTTCCTG TAAGCATTACACACTGTAATTTTTTTATAAATAGATAATTTATGTTTAAGCTTGGCTTCCATTAAACTGTATATATTAGA ACGGGGGCTGTCTAACATGTTATTCCAGAAAACATGAAACGTGTATGTGTATGAGTATCTTCACACAAATGTTCTTCATT CATGCCTTGGGATGGTGAAAGTTCTGATGAGTGATTAGGTCTTTGAAGGATTTAGAGAATTGCTATGGGACGCAAACGAC TTTACTTTACAAATAGTGCTCGTGTAAGAAGATCTACTATGCATGATAGTAGTTGTTAACGGTAGAGCAATAATACTGAT GATAGCCAGCTTGAAGAACTACATTTGCTTTATAAGAGATATAGGAGTGTGGTAGTTGTGTTAGCAAGATTCACGGATCT TAATCTCTGAACTTGTCAATGTGCTCTGTACTACACAGAGAACCACCAAAAGAGCCTAACTGTGAGTGGTAGTGATAGGA GGGAGGAAAAGTGTGTGAGGAGGAGAGGTTTGTGGTGGTGGTGGGGGGTGGTGGCTGTGAATGGGGGCAGACTGGCTGGG AGAGTAGTGATGAAGAAGTCATGAAAAGAAAAAGAGGGGAAAAAATCATACTTGGAGGATTAAAGACTATCACAAAGGCG AGGCAAAATCCTTCTAGAGAGGGTAGGATGGCAGGAGGGGTGATTGTATCATATGAGACATAACACAATGAGAACTGCAC CATCCAAAACCCAGACATACAGACCAAGCAAAGCGCATATATAAACTGTCACAACACCGTAGCTCAGATGAAGATCCCTC TCTTCCTCCCCTTTTCTACCGTCACTTCTATTAAGCAACTGCATCCAGGCACAACTGAAGATTAGATGACCATTCAAAGA ACAAACAACTAAATCCTTTTGCCTTACAACTTTGCCACTTCCAAGACCCAAGCTTTACCAATTCCACAATCCTTTCATTA TAAAATTCTGCAGATTTGAAAATAACTACATTCCTCGCCAACCAGGTAGACCAAATACATGCACAACAAACCGCCAACCA TCCAAGCCTTTTACCTTTCTTCCCTTGCATGACACTTGTGTCCACACCTTGAACCAGCAGCCACTTCACGTTGAGCAAAC TCTTCAGGAAAGAAAATTACTTTATTACTTTAATAAACAATATATATTAATCATATTAATGCAGAAGATAGATACAAACT AATCATATTACTCTTTTTTTTCTTGTACCAAAAAAAAAACTAAAATTTTTCAAATCTCTCCAGCTCCTCAAAGTCCTCAC CATTCTTGGTGTAAGGGAACTCCGAAAATCATTCAGCACCCTTCCTCCATTGCTAAATGCAGACTCTAATGCAATCGTAG AGACCATAATGGATAATACCTCTCGAACTATACTTGAAAGGATGAGAAGTCTAGTTGAGTTGAGATTCCACCAATTTAGG ATATCAAACTCTCCATTTTTATAAGACTCACAACCGTCATTCAAATATTTCTCTAGCTTTGAGCCTCAGACGTAGCATCA ACCTGGGTCTTGTGTCGCACGACCACATGCTCCCTCGTTGGCCTGGTGCTGCGCGACAACATACTTCTGTGGAGTTCCTG TGCAACGCGTCGATCTACTCCCGCGGAGGTGAATATGCCACAATTCTCCAGCCTAAGTGCCGTGACGCTACTATGTCGGT TTTTACACCGCAAAACTACATGCACGATTTCACTCTAGAAAAGCTTTCAAGATTTAGCTCAAGGATGAAACAACATAACC AAATTTTGAAGTGTCAACAAAAGAATGCAACCCCTTGTGAGACTAATGAGTTTCCCTAATTTCCCTAATTTGTTCTCTTC ACATGAATGTAATCCCTTTCTCCCCTCCCCACATCAATGTAATTGTATGACGTTTGCCCTCAGTCCCTCACATTATATAT AGGAGTCTCTTGCACTGTGTATAGGCATGTCCACTTATGGTTTCCTGAGTACTAGTTCAAGTGAAATTGCTAAGATTCGA TACAACAAGTAATCTAAACATTCTATATCCTATCTTTTTTTCACCCTTCTCGTTTAGTCAGAAGGCAAGATGGTCCTTGG TGAAGGATTAAAAACCAAATGGTCCTAAAACTAGAGACATGGTTCTGTATGCAACATTATACTAGCTGCTACTACAGCAA ATTTTGATCAAAGTGAATAAGGAAAGATAAGATGCCGGATCCATTTCAACGAAAGCAGAGCAGTGTGCAGTCACCATAGA ATCTGAGTTTGCAAAAGAAAATTAAGAAAACAAAACTTCATTACTTCAGATTCCTATAATAATTAAGGGACAGAAGCAAA CAATTGCTATCAGATTCCTGTAATACGTACAAAATCAAATCACCAGATTTATCGAACTTAAACATCACCAGTTGAATTAG AGCAAGGGAAGACAAATCTGTTAGGAAGACAGGGGAGCTAAATCACCAATGGGTCAACACCAAAAACAAACAGACACTAC ATGTTTATCCAAAACCTTAAGCTTTTAGGTAAAGATGTGGTGTTGGATTCTCTGTGGTGTCTTGTAGTAATTGTGCTCAT AAGTCCCCTAATCAGCTTTAAAGAAGAACAGAGAAGGGCCTGAAACTATAATACCCAATTGCAAAAAATGGAACTGTATC ATGTGAATAATTGAATATATAGTCAATAGTCATGTATAGAATCATCTAGTTTGATTGGATTGCTAAACTCAATTGTACAC ACATCCAATGAAAAAGTAAAAAAAAAAAAAAAAAAAAAGAAGAAAAAAATCAAGCCATGGACATATTAGAGAGCCTGCTT GGAGTTGGCTTGAAATTCAACCATCTAAGGGCTAAACGCCGTGGTGGTGGTGTCAGTGCCCTTCTTAAAATCTCTTTACT CGCCACACGCTTCTTCATCCTCTCCCCTGGCACCACATACCCGTGGCGTGCACACCGGACCGAACCGGGCCGGTTTGAGC ACTTGCAGGCCGGTCTAAACCGATGAGACATCGGCAAGTAACCGCCGTTGTGACCCTCACCCATCTTGTGCCCTGAAATT GATGCCTTTGGTGGAAGCTCTGAAAATTGCTTGGTTTGCATTTCCCTTGTCAGTTGTGAAAAATATTAGTCCTTTTTTAC AAAGCTATGAAGCCTTGGGTTTGGAAGAGAGAGCCTTTTGGAATTGGAGAAAAAATTATTTGGTTTTGTGTTTGGGTTTG GAAGTGGAGATTTATATGGGAAGGGTTAAAATTGATGAGGAAGGTTCATTGGTTCATGAATGAACCTTTGTTTGGGTTTG GAATGCTTGCTTGACTAGAATTTTGAAGACTAGGTAAGGTAATGGGATTGTTGAAGTGGAAGGAAGACCGTGTAAATTAA ATTAGTGGGGATAGGTTAGGTGTTAAGAGATGATTGACCAGGTTTACTTGTTGTTTTCTTCAGTGCTGGCGTGTTGTGTG TACTTGGTATTAGTCAATTTACTATTGCTTGACACACGAATTTGAAATTCGACCGTTTGATGATTCCTTTCGAATAAACT ACTAACTTATTATTGGCTTGCTTCTCACGTTTTGGAGCTGGAGCTAGTCAGAAC
CDS sequence (LotjaGi3g1v0077400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCAGTCCACAGCGCCGTCGCTCCGCACAGCCTCTTGCCTTCAATTCCCAAACCGAAGACCCCTCACGCGAATGC GCAGAACTTTCCGGCGTTGAGATTTTCCCGGAAACCGATTTTCCCGGGAAACAAACTCTCAGTGGCGGCGAAATCGGCGG TGGAAGATGCCGACGTGGTATTGGTGCAAAGCAGCGATGTTACGGACCAGCAAGAGGGCGTAGTGGTGGTGAGCCGTGTG GAGATGGAAGGTGGTGATTTCGTAGCAAAGGAGGGGTTGTTATCGTTGGAAGGGTTTTCTTCTTCTTCTTCTTCTCCGGG TTTGGTTGGAAATGGGAGTGAGGAGAGCATGGAGAAGCTGATTGATAGGACTATCAATGCTGCTATTGTTCTTGCGGCTG GTACTTTTGCTGTCACCAAGCTTCTTACCATTGATAGTGATTACTGGCATGGATGGACACTTTATGAGATTGTAAGATAT GCCCCTCAGCACAACTGGACTGCTTATGAGGAAGCTCTTAAGACAAATCCAGTTTTCGCCAAGATGGTGATCAGTGGTGT TGTTTACTCTGTTGGGGACTGGATTGCACAGTGCTTTGAAGGAAAACCTCTCTTTGAGTTTGACCGTGCGCGGATGTTCA GATCAGGCCTTGTTGGTTTTACTCTACATGGCTCTCTTTCTCATTACTATTATCAGTTTTGCGAGGAGCTATTTCCTTAC AAAGGATGGTGGGTAGTTCCTGTCAAAGTTGTCTTCGATCAAACTGCATGGTCGGCAGTTTGGAACAGTATCTATTATAC AGTTGTAGGATTCCTGCGTTTTGATTCTCCGATCAATATTTTTAATGAATTGAGGGCAACATTTTTTCCCATGTTGACGG CAGGGTGGAAGCTGTGGCCATTTGCTCATCTCATTACTTACGGTGTAGTACCAGTTGAGCAAAGACTTCTTTGGGTGGAT ATGGTAGAGCTTATTTGGGTGACCATACTTTCAACATATTCAAATGAAAAATCAGAAGCAAGAAACTCTTCGGTACTTCC TGAAGTGACATCTACTACATCTGTTCACCCTCCTGAGGAGAAACGAGAAGAGTTATGA
Protein sequence (LotjaGi3g1v0077400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASVHSAVAPHSLLPSIPKPKTPHANAQNFPALRFSRKPIFPGNKLSVAAKSAVEDADVVLVQSSDVTDQQEGVVVVSRV EMEGGDFVAKEGLLSLEGFSSSSSSPGLVGNGSEESMEKLIDRTINAAIVLAAGTFAVTKLLTIDSDYWHGWTLYEIVRY APQHNWTAYEEALKTNPVFAKMVISGVVYSVGDWIAQCFEGKPLFEFDRARMFRSGLVGFTLHGSLSHYYYQFCEELFPY KGWWVVPVKVVFDQTAWSAVWNSIYYTVVGFLRFDSPINIFNELRATFFPMLTAGWKLWPFAHLITYGVVPVEQRLLWVD MVELIWVTILSTYSNEKSEARNSSVLPEVTSTTSVHPPEEKREEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 24 | 349 | 326 | 3.4E-162 | – | |
| PANTHER | 24 | 349 | 326 | 3.4E-162 | ||
| Pfam | 271 | 331 | 61 | 1.6E-15 | ||
| MobiDBLite | 344 | 365 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0077400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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