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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0080600 |
| Transcript ID | LotjaGi3g1v0080600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear factor Y subunit C; TAIR: AT5G63470.1 nuclear factor Y, subunit C4; Swiss-Prot: sp|A6BLW4|NFYC2_ORYSJ Nuclear transcription factor Y subunit C-2; TrEMBL-Plants: tr|A0A151RNI3|A0A151RNI3_CAJCA Nuclear transcription factor Y subunit C-1; Found in the gene: LotjaGi3g1v0080600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8932870..8933883) extracted from Lotus japonicus Gifu genome v1.2.
AAGTCTCCAACTTGTTTATTCAAAGAATTTCAATTAGCCGGCATAAGCAGGCTTGGCCGGCCACGTTAAGTGAGTGAAAG CTTCAACTGTCGGCTATGGCATGCTCTAGATTTGCTATATATAACACTGAAGCTCACACTGATATACAGCAACTCATAGT ATTTCAGAAACATCTATAACAGCTGAATTTAGTTAACAAAGGAACAGAGAAAACAGAAAAACAAAATGAGGCAAGCTGGT GCATATTCAGGTTTGTTGTGTGGTGGCATTTCAGGAAGAACAGGTCCTCATTCTCTTCCTTTGGCGAGGATCAAGAAGAT TATGAAGAAGTCTGGGGAGGATGTTAAGATGATATCAGGGGAGTCTCCTATTATTTTTTCCAAAGCTTGTGAGATCTTCA TTGAGGAGCTTACAAGAAGGTCATGGATCATGGCCATGCAAGGCAAAAGGAGAACTTTGCATAAAGATGATGTGGCCTCA GCTGTAATTGCCACTGATGTCTTCGACTTTTTGATCACTTTGGTTTCTGATTCTTCTGCTGGAAGTCCTTCAGATGATAG TGCTGCAAGTGACACCACCACCACGCAAATGGAAACTAGTTTGTAATTGTAATATAGATTGGAAATGATTTTTGAATGCC TTACAATGTCGACATTCAATTGATATGTCCGGTTTTAGCAGTCAAAAACTGTCTATGATGTATGAAGTTAAAAATATTGC TACTTGGAACTAATACCCGGAATTTATTTTCAAAAATTGCATTCTGGGATTTAGTTCTTGGATTGTAATTTTAAGATATA CATTCCGAATTTTAGTTCTGGTAGCTATTTTGTGGCAATGTACATTACTTACTGTCAAAAACAGTCAGAAAACCCGTATG TTCATTGAATTTTGATCTCGCCAGGGTTCAAATATCTAGATTGAATATATATATATATAGGCATATAGCTAACTAGCAAT AGTGTTCTGATATCTTAATGCACTGAAGTGTTCTGTTGTTGTTAGTTGAAGAGT
CDS sequence (LotjaGi3g1v0080600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCAAGCTGGTGCATATTCAGGTTTGTTGTGTGGTGGCATTTCAGGAAGAACAGGTCCTCATTCTCTTCCTTTGGC GAGGATCAAGAAGATTATGAAGAAGTCTGGGGAGGATGTTAAGATGATATCAGGGGAGTCTCCTATTATTTTTTCCAAAG CTTGTGAGATCTTCATTGAGGAGCTTACAAGAAGGTCATGGATCATGGCCATGCAAGGCAAAAGGAGAACTTTGCATAAA GATGATGTGGCCTCAGCTGTAATTGCCACTGATGTCTTCGACTTTTTGATCACTTTGGTTTCTGATTCTTCTGCTGGAAG TCCTTCAGATGATAGTGCTGCAAGTGACACCACCACCACGCAAATGGAAACTAGTTTGTAA
Protein sequence (LotjaGi3g1v0080600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRQAGAYSGLLCGGISGRTGPHSLPLARIKKIMKKSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHK DDVASAVIATDVFDFLITLVSDSSAGSPSDDSAASDTTTTQMETSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 119 | 117 | 2.3E-65 | – | |
| PANTHER | 3 | 119 | 117 | 2.3E-65 | – | |
| Gene3D | 16 | 101 | 86 | 2.5E-30 | ||
| SUPERFAMILY | 16 | 96 | 81 | 1.07E-26 | ||
| Pfam | 23 | 87 | 65 | 8.8E-20 | ||
| MobiDBLite | 102 | 126 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi3g1v0080600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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