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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0081600 |
| Transcript ID | LotjaGi3g1v0081600.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein family; TAIR: AT5G48800.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800; TrEMBL-Plants: tr|A0A151QPS9|A0A151QPS9_CAJCA BTB/POZ domain-containing protein family; Found in the gene: LotjaGi3g1v0081600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:9130766..9133069) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAGCTGTCTTGGATTTCATTAGTGCATGGTTAATAAAAAGAAACGATTTGGTTTTAATGATTCTCCCATTAACCGTT TGTAGGATTTTTCGGGATGTACCAAGTGATATAACTATAGAAGTGAGTGGAATAACATTTTCATTGCACAAGGTAAGTAC TTGCCTCATTTAATTTGAGTTTTTCATTATTCTTATTCATAACAATAACATGTTGATGGCTATGCAGAAGTTTCCTTATG TGATTGTTCTAACTATTGTTTCTTCATATGAAGTTTCCTCTTGTTTCCCGAAGTGGAAGAATTAGGAGGCTAGTTGCTGA ACATAGGGATTCTGATATCTCAAGAGTTGAGCTTCTTAATCTTCCAGGAGGTGCTGAATGCTTTGAGTTGGCTGCCAAAT TTTGTTACGGCATCAACTTCGAGATCACATCCACAAATGTTGCGCAGCTATGTTGTGTTTCTGATTACCTAGAAATGTCT GAAGATTTCTCAAAAGACAATCTCGGCTCCCGAGCCGAGGAATATCTTGATAGCATTGTTTGCAAGAATCTTGAAATGTG TGTTGAAGTCTTGCAACAATGTGAAAGCCTGATCCCTCTTGCTGATGAGCTAAAAATAGTTAGCCGCTGCATTGACGCGA TAGCTTCAAAAGCTTGCGCGGAGCAAATAGCTTCTAGTTTCTCAAGATTAGAGTATAGCAGCTCAGGGAGGTTGCACATG AGCAGAAATGCCAAAAGTGATGGTGACTGGTGGATTGAAGATCTTTCTGTTCTTAGAATTGACATGTACCAGAGAGTCAT AACAGCCATGAAATGCCGCGGTGTTCGTCCGGAGAGTATCGGCGTTTCACTTGTGAATTACGCGCAGAAGGAACTTACAA AGAAATCCAGCTTGTGGAATCCATCTACCAATGCTAAAGTTGATTCAGATTCCAGTTTACATGAACAGCTTGTGGTTGAG ACCATTGTCAGCCTTTTGCCTGTTGAAAAACTCGCTGTTCCGATCAATTTCCTCTTCGGTCTTCTGCGAAGTGCGGTGAT GCTTGATTGCGCAATTGCTTCAAGACTTGACCTGGAAAGAAGGATAGGATCACAGCTAGATGTTGCCACTCTTGATGATC TTCTGATTCCGTCTTTCAGGCACGCAGGCGATACCTTATTTGATGTTGACACAGTTCATAGAATTTTGATAAACTTTTTT CAGCAAGATGATAGCGATGAAGACCTAGAAGATGCTTCTCTTTTTGAATCTGATAGTCCTCCTTCTCCTTCCCAAACTGC ATTAGTTAAAGTATCAAAATTAGTTGACAACTACCTTGCTGAAATCGCGCCTGATGCAAACTTGAAGCTTTCTAAGTTTT TGGTCATTGCAGAAACCTTGCCGGCACACGCACGCACCGTTCATGATGGCTTATATCGAGCAATTGATATTTACTTAAAA GTATGTTTTGTTATCTTTGCTTCATACATGTGTACAAAGATTAAGTCGCTATATGTGTTGGTTTTATAATCTTTAAAAAA TAGCTTCTCCTAAGAATTGATTTTAGCTGTAGAATCAATCATAGAAAGACTTCCATACATGCACATAGTATGGTTAAAAC AGCCAATTTCTTGTTATACAAGATTTTTATATCATTCATAAACTTCTCTGGCTTAATCAAACATATATATGTGATGTCTG ATGTGTATCTATTCTTAAATTCTTCCCTGAGTGATGTCTGCAGGGAAATTTGCAGTTTATACCTGATGCTTTCTGTAAAT GTATTTTCAGGCTCATCAAGGTTTGTCAGATTTGGACAAGAAGAAACTTTGCAAAATGATTGATTTTCAAAAGCTTTCTC ATGAAGCTGGAGCGCACGCTGCGCAAAATGAGCGCCTTCCTCTCCAGTCAATAGTGCAAGTTCTTTATTTTGAACAACTA AGACTCAGAAACTCTTTGTCCGGCACCTATGGGGAAGATGACCCCAAGCCAATGCACCAGTCGTGGCGCATAAGTAGCGG TGCACTAAGTGCAGCAATGTCTCCACGAGACAATTACGCGTCACTGAGGCGTGAAAACCGTGAGCTCAAACTTGAGTTGG CTAGACTGAGAATGAGATTAAATGATCTAGAGAGGGAGCATGTTTGCATGAAGAGGGATATGGCGAAGTCCGCATCGCGT AAATTCATGAGTTCTTTCTCCAAAAAAATCACTAAGCTTAGCATCTTCGGACATGGTTCTTCCAGAGGATCAAGTTCCCC ATCCAAAAACTCTCATAGAACAGATTCAAAGGTGATAGAGAGAGTCTGTGCTAGCACAGAATAG
CDS sequence (LotjaGi3g1v0081600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCTCCCATTAACCGTTTGTAGGATTTTTCGGGATGTACCAAGTGATATAACTATAGAAGTGAGTGGAATAACATT TTCATTGCACAAGTTTCCTCTTGTTTCCCGAAGTGGAAGAATTAGGAGGCTAGTTGCTGAACATAGGGATTCTGATATCT CAAGAGTTGAGCTTCTTAATCTTCCAGGAGGTGCTGAATGCTTTGAGTTGGCTGCCAAATTTTGTTACGGCATCAACTTC GAGATCACATCCACAAATGTTGCGCAGCTATGTTGTGTTTCTGATTACCTAGAAATGTCTGAAGATTTCTCAAAAGACAA TCTCGGCTCCCGAGCCGAGGAATATCTTGATAGCATTGTTTGCAAGAATCTTGAAATGTGTGTTGAAGTCTTGCAACAAT GTGAAAGCCTGATCCCTCTTGCTGATGAGCTAAAAATAGTTAGCCGCTGCATTGACGCGATAGCTTCAAAAGCTTGCGCG GAGCAAATAGCTTCTAGTTTCTCAAGATTAGAGTATAGCAGCTCAGGGAGGTTGCACATGAGCAGAAATGCCAAAAGTGA TGGTGACTGGTGGATTGAAGATCTTTCTGTTCTTAGAATTGACATGTACCAGAGAGTCATAACAGCCATGAAATGCCGCG GTGTTCGTCCGGAGAGTATCGGCGTTTCACTTGTGAATTACGCGCAGAAGGAACTTACAAAGAAATCCAGCTTGTGGAAT CCATCTACCAATGCTAAAGTTGATTCAGATTCCAGTTTACATGAACAGCTTGTGGTTGAGACCATTGTCAGCCTTTTGCC TGTTGAAAAACTCGCTGTTCCGATCAATTTCCTCTTCGGTCTTCTGCGAAGTGCGGTGATGCTTGATTGCGCAATTGCTT CAAGACTTGACCTGGAAAGAAGGATAGGATCACAGCTAGATGTTGCCACTCTTGATGATCTTCTGATTCCGTCTTTCAGG CACGCAGGCGATACCTTATTTGATGTTGACACAGTTCATAGAATTTTGATAAACTTTTTTCAGCAAGATGATAGCGATGA AGACCTAGAAGATGCTTCTCTTTTTGAATCTGATAGTCCTCCTTCTCCTTCCCAAACTGCATTAGTTAAAGTATCAAAAT TAGTTGACAACTACCTTGCTGAAATCGCGCCTGATGCAAACTTGAAGCTTTCTAAGTTTTTGGTCATTGCAGAAACCTTG CCGGCACACGCACGCACCGTTCATGATGGCTTATATCGAGCAATTGATATTTACTTAAAAGCTCATCAAGGTTTGTCAGA TTTGGACAAGAAGAAACTTTGCAAAATGATTGATTTTCAAAAGCTTTCTCATGAAGCTGGAGCGCACGCTGCGCAAAATG AGCGCCTTCCTCTCCAGTCAATAGTGCAAGTTCTTTATTTTGAACAACTAAGACTCAGAAACTCTTTGTCCGGCACCTAT GGGGAAGATGACCCCAAGCCAATGCACCAGTCGTGGCGCATAAGTAGCGGTGCACTAAGTGCAGCAATGTCTCCACGAGA CAATTACGCGTCACTGAGGCGTGAAAACCGTGAGCTCAAACTTGAGTTGGCTAGACTGAGAATGAGATTAAATGATCTAG AGAGGGAGCATGTTTGCATGAAGAGGGATATGGCGAAGTCCGCATCGCGTAAATTCATGAGTTCTTTCTCCAAAAAAATC ACTAAGCTTAGCATCTTCGGACATGGTTCTTCCAGAGGATCAAGTTCCCCATCCAAAAACTCTCATAGAACAGATTCAAA GGTGATAGAGAGAGTCTGTGCTAGCACAGAATAG
Protein sequence (LotjaGi3g1v0081600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILPLTVCRIFRDVPSDITIEVSGITFSLHKFPLVSRSGRIRRLVAEHRDSDISRVELLNLPGGAECFELAAKFCYGINF EITSTNVAQLCCVSDYLEMSEDFSKDNLGSRAEEYLDSIVCKNLEMCVEVLQQCESLIPLADELKIVSRCIDAIASKACA EQIASSFSRLEYSSSGRLHMSRNAKSDGDWWIEDLSVLRIDMYQRVITAMKCRGVRPESIGVSLVNYAQKELTKKSSLWN PSTNAKVDSDSSLHEQLVVETIVSLLPVEKLAVPINFLFGLLRSAVMLDCAIASRLDLERRIGSQLDVATLDDLLIPSFR HAGDTLFDVDTVHRILINFFQQDDSDEDLEDASLFESDSPPSPSQTALVKVSKLVDNYLAEIAPDANLKLSKFLVIAETL PAHARTVHDGLYRAIDIYLKAHQGLSDLDKKKLCKMIDFQKLSHEAGAHAAQNERLPLQSIVQVLYFEQLRLRNSLSGTY GEDDPKPMHQSWRISSGALSAAMSPRDNYASLRRENRELKLELARLRMRLNDLEREHVCMKRDMAKSASRKFMSSFSKKI TKLSIFGHGSSRGSSSPSKNSHRTDSKVIERVCASTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 585 | 578 | 1.1E-296 | ||
| PANTHER | 8 | 585 | 578 | 1.1E-296 | – | |
| Gene3D | 12 | 166 | 155 | 5.4E-10 | – | |
| CDD | 13 | 108 | 96 | 1.4202E-35 | – | |
| SUPERFAMILY | 13 | 101 | 89 | 8.63E-14 | ||
| Pfam | 16 | 100 | 85 | 3.4E-5 | ||
| ProSiteProfiles | 16 | 84 | 69 | 9.765 | ||
| ProSiteProfiles | 189 | 471 | 283 | 91.543 | ||
| Pfam | 189 | 446 | 258 | 4.6E-92 | ||
| Coils | 509 | 543 | 35 | - | – | |
| MobiDBLite | 567 | 597 | 31 | - | – | |
| MobiDBLite | 567 | 582 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0081600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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