Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0081600 |
Transcript ID | LotjaGi3g1v0081600.5 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | BTB/POZ domain-containing protein family; TAIR: AT5G48800.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9FKB6|Y5880_ARATH BTB/POZ domain-containing protein At5g48800; TrEMBL-Plants: tr|A0A151QPS9|A0A151QPS9_CAJCA BTB/POZ domain-containing protein family; Found in the gene: LotjaGi3g1v0081600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:9130777..9133069) extracted from Lotus japonicus Gifu genome v1.2.
TTGGATTTCATTAGTGCATGGTTAATAAAAAGAAACGATTTGGTTTTAATGATTCTCCCATTAACCGTTTGTAGGATTTT TCGGGATGTACCAAGTGATATAACTATAGAAGTGAGTGGAATAACATTTTCATTGCACAAGGTAAGTACTTGCCTCATTT AATTTGAGTTTTTCATTATTCTTATTCATAACAATAACATGTTGATGGCTATGCAGAAGTTTCCTTATGTGATTGTTCTA ACTATTGTTTCTTCATATGAAGTTTCCTCTTGTTTCCCGAAGTGGAAGAATTAGGAGGCTAGTTGCTGAACATAGGGATT CTGATATCTCAAGAGTTGAGCTTCTTAATCTTCCAGGAGGTGCTGAATGCTTTGAGTTGGCTGCCAAATTTTGTTACGGC ATCAACTTCGAGATCACATCCACAAATGTTGCGCAGCTATGTTGTGTTTCTGATTACCTAGAAATGTCTGAAGATTTCTC AAAAGACAATCTCGGCTCCCGAGCCGAGGAATATCTTGATAGCATTGTTTGCAAGAATCTTGAAATGTGTGTTGAAGTCT TGCAACAATGTGAAAGCCTGATCCCTCTTGCTGATGAGCTAAAAATAGTTAGCCGCTGCATTGACGCGATAGCTTCAAAA GCTTGCGCGGAGCAAATAGCTTCTAGTTTCTCAAGATTAGAGTATAGCAGCTCAGGGAGGTTGCACATGAGCAGAAATGC CAAAAGTGATGGTGACTGGTGGATTGAAGATCTTTCTGTTCTTAGAATTGACATGTACCAGAGAGTCATAACAGCCATGA AATGCCGCGGTGTTCGTCCGGAGAGTATCGGCGTTTCACTTGTGAATTACGCGCAGAAGGAACTTACAAAGAAATCCAGC TTGTGGAATCCATCTACCAATGCTAAAGTTGATTCAGATTCCAGTTTACATGAACAGCTTGTGGTTGAGACCATTGTCAG CCTTTTGCCTGTTGAAAAACTCGCTGTTCCGATCAATTTCCTCTTCGGTCTTCTGCGAAGTGCGGTGATGCTTGATTGCG CAATTGCTTCAAGACTTGACCTGGAAAGAAGGATAGGATCACAGCTAGATGTTGCCACTCTTGATGATCTTCTGATTCCG TCTTTCAGGCACGCAGGCGATACCTTATTTGATGTTGACACAGTTCATAGAATTTTGATAAACTTTTTTCAGCAAGATGA TAGCGATGAAGACCTAGAAGATGCTTCTCTTTTTGAATCTGATAGTCCTCCTTCTCCTTCCCAAACTGCATTAGTTAAAG TATCAAAATTAGTTGACAACTACCTTGCTGAAATCGCGCCTGATGCAAACTTGAAGCTTTCTAAGTTTTTGGTCATTGCA GAAACCTTGCCGGCACACGCACGCACCGTTCATGATGGCTTATATCGAGCAATTGATATTTACTTAAAAGTATGTTTTGT TATCTTTGCTTCATACATGTGTACAAAGATTAAGTCGCTATATGTGTTGGTTTTATAATCTTTAAAAAATAGCTTCTCCT AAGAATTGATTTTAGCTGTAGAATCAATCATAGAAAGACTTCCATACATGCACATAGTATGGTTAAAACAGCCAATTTCT TGTTATACAAGATTTTTATATCATTCATAAACTTCTCTGGCTTAATCAAACATATATATGTGATGTCTGATGTGTATCTA TTCTTAAATTCTTCCCTGAGTGATGTCTGCAGGGAAATTTGCAGTTTATACCTGATGCTTTCTGTAAATGTATTTTCAGG CTCATCAAGGTTTGTCAGATTTGGACAAGAAGAAACTTTGCAAAATGATTGATTTTCAAAAGCTTTCTCATGAAGCTGGA GCGCACGCTGCGCAAAATGAGCGCCTTCCTCTCCAGTCAATAGTGCAAGTTCTTTATTTTGAACAACTAAGACTCAGAAA CTCTTTGTCCGGCACCTATGGGGAAGATGACCCCAAGCCAATGCACCAGTCGTGGCGCATAAGTAGCGGTGCACTAAGTG CAGCAATGTCTCCACGAGACAATTACGCGTCACTGAGGCGTGAAAACCGTGAGCTCAAACTTGAGTTGGCTAGACTGAGA ATGAGATTAAATGATCTAGAGAGGGAGCATGTTTGCATGAAGAGGGATATGGCGAAGTCCGCATCGCGTAAATTCATGAG TTCTTTCTCCAAAAAAATCACTAAGCTTAGCATCTTCGGACATGGTTCTTCCAGAGGATCAAGTTCCCCATCCAAAAACT CTCATAGAACAGATTCAAAGGTGATAGAGAGAGTCTGTGCTAGCACAGAATAG
CDS sequence (LotjaGi3g1v0081600.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCTCCCATTAACCGTTTGTAGGATTTTTCGGGATGTACCAAGTGATATAACTATAGAAGTGAGTGGAATAACATT TTCATTGCACAAGTTTCCTCTTGTTTCCCGAAGTGGAAGAATTAGGAGGCTAGTTGCTGAACATAGGGATTCTGATATCT CAAGAGTTGAGCTTCTTAATCTTCCAGGAGGTGCTGAATGCTTTGAGTTGGCTGCCAAATTTTGTTACGGCATCAACTTC GAGATCACATCCACAAATGTTGCGCAGCTATGTTGTGTTTCTGATTACCTAGAAATGTCTGAAGATTTCTCAAAAGACAA TCTCGGCTCCCGAGCCGAGGAATATCTTGATAGCATTGTTTGCAAGAATCTTGAAATGTGTGTTGAAGTCTTGCAACAAT GTGAAAGCCTGATCCCTCTTGCTGATGAGCTAAAAATAGTTAGCCGCTGCATTGACGCGATAGCTTCAAAAGCTTGCGCG GAGCAAATAGCTTCTAGTTTCTCAAGATTAGAGTATAGCAGCTCAGGGAGGTTGCACATGAGCAGAAATGCCAAAAGTGA TGGTGACTGGTGGATTGAAGATCTTTCTGTTCTTAGAATTGACATGTACCAGAGAGTCATAACAGCCATGAAATGCCGCG GTGTTCGTCCGGAGAGTATCGGCGTTTCACTTGTGAATTACGCGCAGAAGGAACTTACAAAGAAATCCAGCTTGTGGAAT CCATCTACCAATGCTAAAGTTGATTCAGATTCCAGTTTACATGAACAGCTTGTGGTTGAGACCATTGTCAGCCTTTTGCC TGTTGAAAAACTCGCTGTTCCGATCAATTTCCTCTTCGGTCTTCTGCGAAGTGCGGTGATGCTTGATTGCGCAATTGCTT CAAGACTTGACCTGGAAAGAAGGATAGGATCACAGCTAGATGTTGCCACTCTTGATGATCTTCTGATTCCGTCTTTCAGG CACGCAGGCGATACCTTATTTGATGTTGACACAGTTCATAGAATTTTGATAAACTTTTTTCAGCAAGATGATAGCGATGA AGACCTAGAAGATGCTTCTCTTTTTGAATCTGATAGTCCTCCTTCTCCTTCCCAAACTGCATTAGTTAAAGTATCAAAAT TAGTTGACAACTACCTTGCTGAAATCGCGCCTGATGCAAACTTGAAGCTTTCTAAGTTTTTGGTCATTGCAGAAACCTTG CCGGCACACGCACGCACCGCTCATCAAGGTTTGTCAGATTTGGACAAGAAGAAACTTTGCAAAATGATTGATTTTCAAAA GCTTTCTCATGAAGCTGGAGCGCACGCTGCGCAAAATGAGCGCCTTCCTCTCCAGTCAATAGTGCAAGTTCTTTATTTTG AACAACTAAGACTCAGAAACTCTTTGTCCGGCACCTATGGGGAAGATGACCCCAAGCCAATGCACCAGTCGTGGCGCATA AGTAGCGGTGCACTAAGTGCAGCAATGTCTCCACGAGACAATTACGCGTCACTGAGGCGTGAAAACCGTGAGCTCAAACT TGAGTTGGCTAGACTGAGAATGAGATTAAATGATCTAGAGAGGGAGCATGTTTGCATGAAGAGGGATATGGCGAAGTCCG CATCGCGTAAATTCATGAGTTCTTTCTCCAAAAAAATCACTAAGCTTAGCATCTTCGGACATGGTTCTTCCAGAGGATCA AGTTCCCCATCCAAAAACTCTCATAGAACAGATTCAAAGGTGATAGAGAGAGTCTGTGCTAGCACAGAATAG
Protein sequence (LotjaGi3g1v0081600.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILPLTVCRIFRDVPSDITIEVSGITFSLHKFPLVSRSGRIRRLVAEHRDSDISRVELLNLPGGAECFELAAKFCYGINF EITSTNVAQLCCVSDYLEMSEDFSKDNLGSRAEEYLDSIVCKNLEMCVEVLQQCESLIPLADELKIVSRCIDAIASKACA EQIASSFSRLEYSSSGRLHMSRNAKSDGDWWIEDLSVLRIDMYQRVITAMKCRGVRPESIGVSLVNYAQKELTKKSSLWN PSTNAKVDSDSSLHEQLVVETIVSLLPVEKLAVPINFLFGLLRSAVMLDCAIASRLDLERRIGSQLDVATLDDLLIPSFR HAGDTLFDVDTVHRILINFFQQDDSDEDLEDASLFESDSPPSPSQTALVKVSKLVDNYLAEIAPDANLKLSKFLVIAETL PAHARTAHQGLSDLDKKKLCKMIDFQKLSHEAGAHAAQNERLPLQSIVQVLYFEQLRLRNSLSGTYGEDDPKPMHQSWRI SSGALSAAMSPRDNYASLRRENRELKLELARLRMRLNDLEREHVCMKRDMAKSASRKFMSSFSKKITKLSIFGHGSSRGS SSPSKNSHRTDSKVIERVCASTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 8 | 571 | 564 | 3.7E-277 | – | |
PANTHER | 8 | 571 | 564 | 3.7E-277 | ||
Gene3D | 12 | 166 | 155 | 5.2E-10 | – | |
SUPERFAMILY | 13 | 101 | 89 | 7.85E-14 | ||
CDD | 13 | 108 | 96 | 1.34878E-35 | – | |
Pfam | 16 | 100 | 85 | 3.3E-5 | ||
ProSiteProfiles | 16 | 84 | 69 | 9.765 | ||
ProSiteProfiles | 189 | 457 | 269 | 73.04 | ||
Pfam | 189 | 432 | 244 | 2.5E-72 | ||
Coils | 495 | 529 | 35 | - | – | |
MobiDBLite | 553 | 568 | 16 | - | – | |
MobiDBLite | 553 | 583 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0081600.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…