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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0082100 |
| Transcript ID | LotjaGi3g1v0082100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L13; TAIR: AT5G48760.1 Ribosomal protein L13 family protein; Swiss-Prot: sp|Q9FKC0|R13A4_ARATH 60S ribosomal protein L13a-4; TrEMBL-Plants: tr|I3SXE7|I3SXE7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0082100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:9178051..9180858) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAGTGAACATGTTTTCTACCTCATTTTCTGTTTTCAATGAAAATGACCAAACCAAACCAAACAGGCCCTTATGTTGT GTAATGGGCCTAAAACCCGAATTTACTCTTTCGTCTTCTTCTCACCATCGAATTGCAGACAGAACACCAGCAACAGCAGC AGCCGCCAAAGGCGAAGAGAGTGAGAATGGTGTCAGGTTCAGGGATCTGCGCGAAGAGGGTGGTGGTGGATGCGCGCCAC CACATGTTGGGTCGGCTTGCTTCGATCGTGGCGAAGGAGCTTCTCAACGGCCAGAAAGTGGTGGTGGTTCGGTGTGAGGA GATTTGCATGTCTGGTGGTCTCGTCAGGCAGAAGATGAAGTACATGAGGTTTCTCCGGAAGCGTATGAACACCAAACCTT CTCATGGTCCTATCCATTTTCGTGCTCCTTCCAAGATTTTCTGGCGCACTCTTCGTGGGTATGTTCCTCTTTTTCGTTTC CTCATGTTTATGCATTGATTTTTCCATTTGATTTGCAGTGTTGGTTTTTGATGAATTTGGCCTCTTTGTTTTTGGGTATG AAATTGATTTTGTAAAAGCAGCTGAATGAGCTATCAAACTGTGTGTGGTTGTGAGTGGATGATGATTTTGGGGACTGATT AGTTGTTTCACTATTGTGATTATGCTTGCTTTGACTAGTGGATTTCAATATTCAGTGGGTTTTTTTTTCCAGTCTTTGTT AGAGAAGTCAATGAATTTGAAATGGGAGGCTGTACTTGTGATTTGTTCTATGTATGTTAATATTTGCCAATTTCGTGTGG TTTGAATTTTGTTTTTATGATGCTGTTTTTGAATAACAAAACAAATGGAAATATGAAGGAAAGTGACTTAGAAGCATGCT AGAGTGATGATGATGAAGAATCTTCTCGTACTAGAGTTTTATTAGGAAGTCTATAATATTACTGAAATATTCCCTCATAG AAAAACGGCTGTGATGAATATTTAGAATGAAAGAATGGGTTCGACAAATGCATAAAAGGATTAGTCAATGTTACTTTATT GTGTGAAGGTTCTGAAATTTCTGTTTTTTCAGGATGATACCACACAAGACTAAGCGTGGTGCAGCTGCTCTTGAACGTTT GAAGGTGTATGAGGGTATCCCTCCTCCATATGACAAGGTCAAAAGAATGGTTGTCCCTGATGCTCTCAAGTATGTTCTGT CTTTCTTGATCTGTTTTTTTTATTGTGACATATTACAAGTCAGTTCTATATGAACCTCATGTCTTAAATTAATAAAATCA GGGTGTTGAGGCTTCAGAAAGGACACAAGTACTGCTTGTTGGGTAAGTTGTCATCTGAGGTCGGATGGAACTACTATGAT ACCATCAGGGTAAGTTCTTGCTTTCTAATATCCTGTCTTCCTTATGCTATTCTACTTCTTATATTCAACTTGTGCAGATT TTTGGTGGTTTTGTCCTTTAGAGTGAATAAGTCACTTTAGAGGGTAAAGTAAGTCATTACATAATGGTTAGTTGAGAAAT TATAGTTTGAGACTGTGATGATATACTTACACAGTTACACATGTATAAACAAACTATGATATTCTTTAAATCTCAACCAT TGATTTTGCAATAAATAAAGTGAAATAGCCCCTTCTCTAGATTAGCTAAATTCTTTTGCTAGTTTTCTGCATACCCCTAA TATGATATGATTTCATCTAATCCCATATATGAGCTGATTGCTAAGACCATCTATTTGATTGCTATTTATCTTCTATTATT TTGCCTATCTTTTTTTCATAGGGGTTACCAATAGAGATGATCTGCAATTTTGTTTTTCCTATTTTTCCATGTTCTTTTAT CCAGTGTTAAGTGAGAATCCAAATTATGTTTCTGGAAATTCAGTGAGAATGTACTCTGTCGTACTGTGTAGCTTTCGACA CGTGAGTTAAATGTTTTGTTGTTCTCAGGAGTTGGAAAAGAAGAGAAAGGATAAAGCACAAGTGCTTTACGAGAGAAAGA AGCAACTCAACAAATTGAGGGTCAAAGCAGAAAAAGTTGCTGATGAGAAGCTTGGTTCCCAGCTTGATATCCTTGCTCCG GTTAAGTACTGAGTAGTCTTTCTTAGTACTTCAAAGTTGTTATGCTGACTTATACCAAAATTGGAACTGCCTCTAAGTTT TGCTGGCGGTTGTATTTGTCATTGGATCCTAGATCTGATAATCTTGGAGGATTTTTATTTTTTTACATTTGTGCTTTGCA GAAATTTTGCACCATCATAGCCTTCTCTCAATAGAGTAATTTTTCAAAAATCTGTTTTGACTTGGTCAGTGTGCTAGTTT GTTTTTGGTAATAGCAAGCCTTTATGTTCAAGATTAAGGGTGTGTTTGTGTAAACAGTCTAAGTTAGTGCTTATGTTACA CATCACTTAAGTGTTTATTCACAAGCTGATTTAGGATATTTATTCAAAATACCTTATAAGTTATTATAAGTTAATAAGAA AAGCTTAGAACGTAATAAGCTCAAGCGGTAAAAGTTAGTGGACATCAGTTGGGAACGGAGAGGTTCAAGGATGATACCTG GAGGGCTGCAGTTTATCTTTCTGATGTACCAATCAAAAGAGTTTGAGTACGAAAAGAGTTTCATAAGTTACTTTGCTTTA AATTAATTTGTTGTTTCACTAATTTTTTAAGTCCTCTGAATTTAGTTTTTTTAATAGATATTTCTAGTTTTACAAATTTT ATAAGTGACTGCTTAGAGGCTAACTACTTAAACTAGCATTGAATATTGCTCCCGATAATGTTGATTTGGTTATTTTTCCT TCTCTTAC
CDS sequence (LotjaGi3g1v0082100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCAGGTTCAGGGATCTGCGCGAAGAGGGTGGTGGTGGATGCGCGCCACCACATGTTGGGTCGGCTTGCTTCGAT CGTGGCGAAGGAGCTTCTCAACGGCCAGAAAGTGGTGGTGGTTCGGTGTGAGGAGATTTGCATGTCTGGTGGTCTCGTCA GGCAGAAGATGAAGTACATGAGGTTTCTCCGGAAGCGTATGAACACCAAACCTTCTCATGGTCCTATCCATTTTCGTGCT CCTTCCAAGATTTTCTGGCGCACTCTTCGTGGGATGATACCACACAAGACTAAGCGTGGTGCAGCTGCTCTTGAACGTTT GAAGGTGTATGAGGGTATCCCTCCTCCATATGACAAGGTCAAAAGAATGGTTGTCCCTGATGCTCTCAAGGTGTTGAGGC TTCAGAAAGGACACAAGTACTGCTTGTTGGGTAAGTTGTCATCTGAGGTCGGATGGAACTACTATGATACCATCAGGGAG TTGGAAAAGAAGAGAAAGGATAAAGCACAAGTGCTTTACGAGAGAAAGAAGCAACTCAACAAATTGAGGGTCAAAGCAGA AAAAGTTGCTGATGAGAAGCTTGGTTCCCAGCTTGATATCCTTGCTCCGGTTAAGTACTGA
Protein sequence (LotjaGi3g1v0082100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVVVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRA PSKIFWRTLRGMIPHKTKRGAAALERLKVYEGIPPPYDKVKRMVVPDALKVLRLQKGHKYCLLGKLSSEVGWNYYDTIRE LEKKRKDKAQVLYERKKQLNKLRVKAEKVADEKLGSQLDILAPVKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 206 | 206 | 7.1E-136 | – | |
| PANTHER | 1 | 206 | 206 | 7.1E-136 | ||
| Gene3D | 7 | 154 | 148 | 2.3E-71 | ||
| Hamap | 11 | 135 | 125 | 19.387 | ||
| TIGRFAM | 12 | 154 | 143 | 2.6E-55 | ||
| Pfam | 12 | 118 | 107 | 1.2E-9 | ||
| CDD | 12 | 113 | 102 | 1.89293E-40 | ||
| SUPERFAMILY | 12 | 154 | 143 | 1.44E-50 | ||
| ProSitePatterns | 89 | 112 | 24 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Cellular component | Large ribosomal subunit | The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). |
Expression pattern of LotjaGi3g1v0082100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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