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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0086600 |
| Transcript ID | LotjaGi3g1v0086600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ER lumen protein retaining receptor; TAIR: AT3G25160.1 ER lumen protein retaining receptor family protein; Swiss-Prot: sp|P35402|ERD2A_ARATH ER lumen protein-retaining receptor A; TrEMBL-Plants: tr|I3SII9|I3SII9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0086600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:9772671..9777106) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAAAAACCTCATCCTCTAGTGCATGTTCTCTTGTTGTGAAACATCTCTCTATTTCTTCAGCAAAAATATTTCTCT AATCTTTACTATTGCTCTCTCTCGATCTATATAACTGATACAAACTGTGTTTGAGTGAATTTTTGCTGAATACACAATGG GTACAAAGAGGGATTCTCCAATGATGAATGTTTTGTTTGAATGGTTGAGGAAGGGATCTAAGAGAGTGAAGATCATTTTG GGGGCATTGCTTTTGGTTTTTGCGATTGTGGCTCTAAAGTTCACTATCTATAATCCGTTGCATTTCTACATAGCCTCTCG AGTAATTCATTTTGCTGGGATTGTTGTTCTTATACAGAAGCTCTTTTCCCGCAAGACCTGCTCTGGTACGTTTTCTTTCC AGTTTGTCAAAATTGTTAATTGCGATTGTTAATTATTTTCTAGATAAATCTCATCTTCATGTGGATATGAAAACCTAGGA ATTTAAATTTAAATTATGGAACAGGCTGCCTAGTTTTTTATCTCCCTCCACCCCTATCACTATTTGGAAGGAGCTATTTA CCTTTTTAAATTCAATTATGTTAGAAATGGGTAATGTGTGGAGAATATATAGTTGTATTCTCATGAACACAATCGTGAGG TTAGAATTCATAATTGATTTAATTTTATTATATTGAGTCAATAAATCAATATAATCGATTTGATCTGATTTAGTTAGCGA ATAAAAAATTGTCAGTTTGATTCATTCTATAAGAAATATCATTTTGATATGAATAAACTATCCACCATTGGACTAGATGG GAACACTCCTAGCAGGTTATTTGATTGTGTTCGCCATATACCGACGGCTACGAGAACATGGATTAAGCTTTTTGCTTATG ACCACGCTTGATGACCATGCATGTGTTTATATCTGAATTCTTTATTTCCATTTCTTAAGAAGATGGTTCCTTTGGATTTG GAGTCGATTTTTAATCATTCACCTTTTGAGAACATGAGCAAACGCTCTATATCCTAGCACCTTCAAATGGTTGTAGGATA CATTCAATTCATACCTGTCCGAAAATCGTTTGGAATGTGACCATTAGACAAAGCTAAAGGAGAAAATTTAAGTCTCCGAG TGTCTTCTACAAGTACACCCCTCAATGTGTTAATGTAGCTCTATCCTGTTAGCTAAGCCATCCAAGGCCATGCACCACCA CCGAAGGCAACATGATGAGAGAAACTTCATTTCAAGAAGAACAATATATGTCAAATAAATGACAACGTTTTAATGAAATA ATAAAATAATAAAGGAAAAAATATGAACTACACTGAAAAATCTAGGACAAGTGGGTCAACCCCAAGCTTATTTTGTTGAG AAATATAAGTGTCTTATATATTTAGTATAAGATGAGAATGGTTTTTTGCTTCCTTACTCATACATTAAGTGGTTCAACTT TTGATCATACATAAATTGAAGTGTTCATTGCAATGGCAACTAACGAGTCCAAAGAAAAATTGTCTAATTCTATTTTTCAG GATTATCAGTTAAGACCCAAGAGATCACAGCTTTATCCCTATTATCGAGATTAAACTTTAGGTTGTTGATGGTGGGTAGC ATCTACGTTGTGCTAGATTTCATATCTCTCGTGGCTACGTTACTTGTTATATGGGCAATGAGGTTCAAGTTGAAGTCATC CTATGTCAAAGAGCTTGATACCTTGAGACGATCGTTTGTGGTAAGTAAAATTAATATAAATGCATTATTTAAAATGTCGC ATCATAGTTTTCGTTTATTGTTTGTGCGTCGGTCCAGAAACTCTGTAGCTAATCACTTAGCTAAGAACTCCTCAAAGTAT CTCAATAATGTTTGGATTGAGGAGGTTCCCCCGGATTGTGTCGGTTTGGTTGGTTCTGATGTAACTGCCTCTATGACTTC TTGATTTTAATGCATTGGTTCCACGTTCAAAAAAAAATGTCGCATCATGAATATGTTATGTCAATTTGAATACCCATAAC ATTTGAAGTTTGATTTATAATAATAAACTAATTAGGACAGGATAAGAAAAAATTTCATGCTTAAAGAAAATTAGAACAGA CTTAGATTTACCTTATCTTAAGGGGAATAGTGGAGGCTTGAACCTACACTATGTTAGATATGAGATGCAATCATACTCCA TTCAGTTGGCCCCTTGGGTTTAATCAAGTTATACATCAAACCTTATGTAATAATTTTTTTTTTAATATTTTGAGTGAAAT TTTTAGTTTCATAGTTGTAGTTATTACTAAACAATATCTTTAGATATTCTCATGCACATAGAATATCTATAACATCTATT AATTGTGTATACTATAGGTGGTTCCTTGTGCAATCCTTGCGATCCTAATCCACCCTTATACAATTCATTCTCGCTTAAAT CGAATCTCTTGGGCATTCGGCACGTATTTAGAAGCTATTTCAGTTCTTCCTCAACTTCATTATTTGCAAAATGCAAAGGT ATGTCCTCAAGTATTTTTTTTATATAAATATTTTAATTCCTGAAAGAGTATATTGTAAAATCGTGGTATTTGTAGATGGT TGAAACATTTACGGGATATTATGTATTTGCTCTTGGGGTTTCAAGATTCTTCCTATTTGCTCATTGGCTTATTCAGGTAA TACTGTCATTTTTCTCTATTTAGTTTCCTATAATTTCTTATATATTAAGATTTATAAGCACACATTTATCAAAATTGCCG CTAGAATTTCAAAAAAAAATGGAATATCAATTTGTTAAAATGATTTCATATTTTTTTTATTTGGGTCAATTCACTTTACA TTTATGTAATTAAAAAATGTATATCTGAAAACTATAAGGATCTATTTAGCCAAAGTTACAAAAACACAACCCTTTTTTGA AGTTGCCTTACCTTGACTCTGTTTTTGTAGCGTGTGGCTCTGTTTTGTTGCTCTACTGTAGGCTGTGTTTAGTTCGTGCT TTCTTTATCTTTTTGCTTCTTCTAATTTTCTGTTTGCTGTATTCTGGGCTTAATATATAGGGAGAGCTTTTGTTCCCTAG GTGCTTTTAATTCAATATTCTTTTTTCAAAAGAAAAAATGTTCACTAATTTTTGCATATGCATGTGTGCTTGTATTAAGT TGTAATAAGAATATACTCAAAATTACTTAAATCACCATTTTATAGGATTTAGGGAAAGGGTTTGATTGTGTACTACACTA GTTATTCTCCTATACATCTCTCTGTATTCTATTAAAAGTCATTTTTTATGAGTTTTTTATCCAAAAATAGAAGTCACTTT ACAATATATATCTATGCATCATTAAAAAAATTCTTCATGTTTACCCTTATAGCATTTAATGAGTTTTTCTACTTTCCAAT ATTTTTCATTATTTTTAAGGTCATTTTCATTTATATCTACTCCAAAAACCTTTCGAAACTTATATTTTACTGGTGGAAGG AGGTTTTCAAGATAGTGGAACATTAAAATGGAGAGAGAAGTATATGAGATTAATTGAATTGAAATTGCTATACTTTTAAG TTTTAAATGAAAGTAATTTAGGAAAAAAGATACAAATTTATTGTGACTAACTAATTCAGTAATTTTTTATCCACAAAAAT TAGGTAAAAGTGAGTTATAATAGACGACGCATGGAGTAGCAAAAAGTCATTCGCATTTGCTACAAAGCCTGGATACCAGT ACATTAAATCATGTCTAATTATCTCTAATTTTTGTAGAGTTATGAGAATCCAAGGTTATATTTTCTTCTAGTTGAGAATG GCAACGTGTGGCTCATTCTAGCTCTTTTGTCAGAGTTGGTTCAAACATTCATCTTGGCAGACTTTTGTTACTATTACATG AAAAGGTATGTACACCAATTTGTTTCCACTCCTAGATCTAGTCCTTCCTAATTAACTAGTTTCAATTTTTTTCAATCTTT GAATATATATATATATGAGGTAATAAAATCATAAGTATGTTATTTATATACTATTTTCTTAAGAAAAAAAGTTACACAAT TAAAGAAAAAACAAGTGCACATAGTGGAGTTATTGATGGGAGGAGAACACAAAATGAAGAAATTAAGAAAAAATCATGAC AAGTAAGGTTTTAATGAGACACACACTTTAGTCTCAAAGAGCTTGGGTAGGGTTGGTTTTCTCATTGATTATTGTACTCT TGGAGGTTTCTCTATTAATAAAGATATATATCTTTTTTTGTTGTAAATATAATGAAAACTTTTTTTGCTTTTGAATCACT TACTCATATTTTCTTTGCTTTGTTTCTTTTTCCCCAGCTTTATACAAGGACAACTTCTAAGGAAAATGCCTATTTAATTA AGATCTCAATTTTCTGGTGTACAATGTGCTTACTAAGAATTAAGCACATAATATAAATCTCGAGGCTAGCTATTCTACTA TTTACAGCTCATATGTATGAGTTATTACTCTTGAAA
CDS sequence (LotjaGi3g1v0086600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTACAAAGAGGGATTCTCCAATGATGAATGTTTTGTTTGAATGGTTGAGGAAGGGATCTAAGAGAGTGAAGATCAT TTTGGGGGCATTGCTTTTGGTTTTTGCGATTGTGGCTCTAAAGTTCACTATCTATAATCCGTTGCATTTCTACATAGCCT CTCGAGTAATTCATTTTGCTGGGATTGTTGTTCTTATACAGAAGCTCTTTTCCCGCAAGACCTGCTCTGGATTATCAGTT AAGACCCAAGAGATCACAGCTTTATCCCTATTATCGAGATTAAACTTTAGGTTGTTGATGGTGGGTAGCATCTACGTTGT GCTAGATTTCATATCTCTCGTGGCTACGTTACTTGTTATATGGGCAATGAGGTTCAAGTTGAAGTCATCCTATGTCAAAG AGCTTGATACCTTGAGACGATCGTTTGTGGTGGTTCCTTGTGCAATCCTTGCGATCCTAATCCACCCTTATACAATTCAT TCTCGCTTAAATCGAATCTCTTGGGCATTCGGCACGTATTTAGAAGCTATTTCAGTTCTTCCTCAACTTCATTATTTGCA AAATGCAAAGATGGTTGAAACATTTACGGGATATTATGTATTTGCTCTTGGGGTTTCAAGATTCTTCCTATTTGCTCATT GGCTTATTCAGAGTTATGAGAATCCAAGGTTATATTTTCTTCTAGTTGAGAATGGCAACGTGTGGCTCATTCTAGCTCTT TTGTCAGAGTTGGTTCAAACATTCATCTTGGCAGACTTTTGTTACTATTACATGAAAAGCTTTATACAAGGACAACTTCT AAGGAAAATGCCTATTTAA
Protein sequence (LotjaGi3g1v0086600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTKRDSPMMNVLFEWLRKGSKRVKIILGALLLVFAIVALKFTIYNPLHFYIASRVIHFAGIVVLIQKLFSRKTCSGLSV KTQEITALSLLSRLNFRLLMVGSIYVVLDFISLVATLLVIWAMRFKLKSSYVKELDTLRRSFVVVPCAILAILIHPYTIH SRLNRISWAFGTYLEAISVLPQLHYLQNAKMVETFTGYYVFALGVSRFFLFAHWLIQSYENPRLYFLLVENGNVWLILAL LSELVQTFILADFCYYYMKSFIQGQLLRKMPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 270 | 270 | 1.1E-109 | ||
| Phobius | 1 | 25 | 25 | - | – | |
| PANTHER | 1 | 270 | 270 | 1.1E-109 | – | |
| Phobius | 26 | 45 | 20 | - | – | |
| TMHMM | 26 | 48 | 23 | - | – | |
| Phobius | 46 | 97 | 52 | - | – | |
| PRINTS | 50 | 69 | 20 | 1.2E-15 | ||
| Pfam | 74 | 216 | 143 | 7.0E-34 | ||
| PRINTS | 77 | 97 | 21 | 1.2E-15 | ||
| Phobius | 98 | 121 | 24 | - | – | |
| TMHMM | 99 | 121 | 23 | - | – | |
| Phobius | 122 | 141 | 20 | - | – | |
| TMHMM | 142 | 159 | 18 | - | – | |
| Phobius | 142 | 160 | 19 | - | – | |
| Phobius | 161 | 165 | 5 | - | – | |
| Phobius | 166 | 186 | 21 | - | – | |
| PRINTS | 168 | 188 | 21 | 1.2E-15 | ||
| TMHMM | 169 | 186 | 18 | - | – | |
| Phobius | 187 | 197 | 11 | - | – | |
| PRINTS | 190 | 204 | 15 | 1.2E-15 | ||
| TMHMM | 195 | 217 | 23 | - | – | |
| Phobius | 198 | 216 | 19 | - | – | |
| PRINTS | 204 | 222 | 19 | 1.2E-15 | ||
| Phobius | 217 | 235 | 19 | - | – | |
| TMHMM | 232 | 254 | 23 | - | – | |
| Phobius | 236 | 258 | 23 | - | – | |
| Phobius | 259 | 272 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein retention in ER lumen | The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ER retention sequence binding | Interacting selectively and non-covalently with an endoplasmic reticulum (ER) retention sequence, a specific peptide sequence that ensures a protein is retained within the ER. |
Expression pattern of LotjaGi3g1v0086600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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