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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0086700 |
| Transcript ID | LotjaGi3g1v0086700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ER lumen protein retaining receptor; TAIR: AT3G25160.1 ER lumen protein retaining receptor family protein; Swiss-Prot: sp|Q8VWI1|ERD2B_ARATH ER lumen protein-retaining receptor B; TrEMBL-Plants: tr|I3SII9|I3SII9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0086700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:9793147..9799127) extracted from Lotus japonicus Gifu genome v1.2.
TTCTTTTGTTGTAAATCTCATCTCTATCTCTTCATCTTTCTCTAATCTTCACTATTGCTCTCTCAATTTATATCTCTGAT ACAAACGGCGTTTGAGTGATTTTTGGCTGAATACACAATGGGAACAAAGGGGGATTCTCCAATCATGAATGTGTTGATTG GATGGTTGAGGAAGCGGTCTAAGAGAGTGAAGATCATTTTGGGGGCATTGCTTTTTATTTTTGCGCTGTTGGCTCTGAAG TTCACTGTTGAAGATACAGTCCATCTCTACTTAGTCTCTCGAATAATTCATTTAGCAGGGATTATTGTTCTCATACACAA GCTCTTTTACCGCAAGACCTGCTCTGGTATGTTTTCTTTTCAAATAGCCACAATGGTTAATTATTTGAGGAGTTATTTAC CTTTATGAATTTAATTACTTCAGTGTAATTTATGAACTTTTCTATTTTTTACATTTAGATAGTAGAGAAATTAAGCTCAA CACATTATTTAAGTGTAATCAAGAAAATTGAAATTTATGTTGTTATAAATTTAGTGTACGTTAAGATTGTGTTTTAGGTT CATTACTCAACACATTAAGCGTGTTAAAAGTGTTCATTACAAATTTACAATGTCAGCTACGAGTTGATGGCCTTTAGCTT CATATTTTCATTTTATACTAGAATGTGGCGAGTCTAAAGAAAAATTATCTAATTGTGCTTTCAGGTTTATCACTTAAGAC CCAAGAGATCACAGCTTTATACCTAGCTTCAAGAATAGGTTTGAGCTATTTGATGGTGGGAAACATCCACACTGTGCTAG ATTTCATAACTCTTGTGTCCACATTACTTGTTATATGGGCGATAAGATTCAGGTTTAAGTCATCCTATGTCAAAGAGCTT GATAGCCTGAAACGATCATTAGTGGTAAATAAATAAAGTTTATTATACACTATATCATGGAATTTTATAGCTTAATAAAA ATTCGTATCATCAATATATTATGTCTTATTTGAATATTCATAACATTTGAAGTTTGATTTATATTAGTTGTAAAGTTTGT TCTCATCAAATTTTCTCTATCAATAATATATCTTTTTGCTGTAAAAAAATATTCTTTAGATTCCTTTCTTTCTCTATAGA CACGTCAAATGGATTTCTGTTTACTTTTTCTTGAGGTCTCAAGCTAGTGTGGGCATAATGTTTATCATTTTCATTGCATC TGCAGAGAATAGAAATAACACATATTGATTGTGCATTTTAGGTGGTTCCTTGTGCAATCCTTGCAGTCCTAATCCACCCA TATACACCTCATCCTCGCTTATCTCGAATCTCATGGGCATTTAGTGGGTATTTGGAAGCTGTTTCAGTTCTTCCTCAACT TCACTTTCTGCAAAATGCAAAGGTATATCCTCTAGTCTTTTTTAGTCAATGAAAATTTCAATTCCTTAAAGAATATGTTG CATAATTCTGGTATTTGCCAGATAGTTGAAACACTCACTGGATATTATGTATTTGCTCTTGGGGTTTCAAGATTCTTGCA AATGGCTCATTGGATTATTCAGGTAATGTCAAAATTTTCTCTATATAGTTTCCTATAATTCCTCCTATATTAAGGTTGTC ATAAGCATGGTAGTCAGTATCGTGCGTATCGTACGATACGTATCCCGATACGATACGAAAATCAACCAAATGATACGTAT CTCATGAACGTATCTTTTTGTGTTCGTATCGTGACCTGTATCGCACGTATCGCATGAGTATCGCACGATACGTATCCCGA TACGATACAAAAACAGTTTTTCAAATGTCGTTTCATCTTACTCTCCTGGAAATTAGGGAGTGGGCATTTAATTTCATTAA ACATTAGTAAATTACCCTAAAAAGTGATGTTTTCTTTGATTCTTTCACCCTTTCACGTTCAACTTCAGCAGCCCTTTCAC GTTTCACGTTCAACTTCAGCAGCCCTTTAATGGCTTGGAAGTGATGCTGATTGGGGTTCTGACCCTGATGACAGAAGGTC TACCTCGGGTTCTTGTGTCTTTCTAGGTCCTAACCTTATCTCTTGGGTGGCTAAGAAACAAACTTTAGTAGCTAGGTCCA GCACAGAGGCAGAGTACCGTAGCTTGGCTAACACTACTGCAGAACTCTTGTGGGTTCAATCTCTCTTGACAGAGCTGAAG ATATCTTTCACTACTCCCACTGTTCTTTGTGATAACATGAGTACAGTTCTTCTGACTCATAATCCTATTTTGCATACGAG AACAAAGCACATGGAAATGGACATTTTTTTTGTGAGAGAGAAGGTTCAGAACAAGAGTCTTTTAGTGCAACACATCTCAG CTGAACATCAGAGGGCTGACATTCTTACCAAGGCACTTCTCCCTACTAGGTTTCTGGAATTGAGAGACAAACTGAATGTA GTTGACAAGTTACAACTAGTGTCACCTACTTCAGTTTGAGGGGGTGTATTGGAACTAGGGAGTGGGCATTTAATTTCATC TCTTTGATGTTTAGTACTTTAGTTTGGCTTATGGCTTGGAATTAGGTTAAACTTGAACTTTGCGAGACTATTTTTCTACT TATGACTTGGATCTTTGATTATTTTGAACTATATTTATATGATATATTAGTATATTATTTAACTTATGACTTAATTTTTT TTGTGTCCGTATCTTACGATACAAGTTACGATACGATACACAACACGGAATTAGGGTCTAGCGATACACGATACGTATCT CGATTTGACTACCTTGGTCATAAGCACACATTTATCAAAAGTGTCGTTTGCATTTTAAATAAAAATGAAACATCAACTTG TAATAGTGGTTTCATAAATTTTGTTATTTGTATCAATTCACTTTATACTTCTATAACTAACACAATATAAAAACTATTAT GATTTGTTTAGAAAAAATGACAAAAAAATTAAAAATAAATATTAACTAATTATTTTTTAAATTGCCTTCATGCGTATGTG TGCTTGTATGAACTTATAGTTAGAATGTACGCAAAACAATGCAACAATGTTAGGGAAAGCGTTGATTGTGTTCTAGGGAG AACAAATGCATTCTGCATATTTTGTTTGTGAAGTTTGCTTGCAAAAAGAGTTGTACATGTCAAATAATAGCTTGTCCAAA TACTTAATAAGAGAGTTAAAAAAAATACTCCATGATGACTTAAGGAGCTATATCTATTATAGACTGCAAGGATGACTTTT TTTTTTTTTTCATGAATCATATCTAATTATTTCTAGTTTTTTATTTTTAGAGCTATGAAAATCCAGGGTTATACTTTTTT ATGATTGAGAATGGAAATTTCTGGTTCGCGGCAGCATTTATCGCGGAAATGGTTCAATCATTTATCTTGGCAGACTTTTG TTACTATTATATGAAAAGGTATTTACACCAATTTATTTTATAGACCAAGTCTTTCCTATTCAACATGTTTAAATATTAAA ATTATTTGATTTTACATTTTTATTTTCTTAACATATCTTCACCCAAACTTAATTGCTTTTATTAGCATTCTTAAACGCTA CTGTTAGGATAGCTCAAGTGGTAAGAGCTGAGAAACATAAGAGTTGGGTAGGGAGAGATTCAGGGATCAATTCTTAGGAG GTGCAATTTATCTTTCCGATGTATCATGAAGAAATATTGATTTAGTCGATTAGTTGATGGTTAGTTAGTGACCTGATTAC TAAAAAGTAAGTTAGTTTCTTTACCCTATATTTACTCTTTTATAAAGTAAGTTAGTGGCCTCGGCTCTTGCCCTTGCCTT TGGTCCAATTGTTTGTTGGGGTGCGATTGAGGTGTGAGAGGCGAAGCACTGTGCGTACGGTTTATGGGTATTATTGTAAT CTGAATTATTATTATCTTTATATATGTTTGTAACACTGTAATTCTAGGGTATTCTGAATCATAATCAGTAAACGGAACTA TAACTACTCAATAATCACAGACATAGACAATTTGACCGAACTGCGTGATTAATATCTTATATTTTTCTCTCTATACTCTG ATCGGGTCTGTATTCGTGCTACTGTTTCAACAATAACAATCATACTGTATTATATCTACATCTTTTTCAATCATCATGGA TATTTCCCGAACCTTATTTTGTTGTCAAACCAACATTGTTAAGTGTTCAAGTGACAAGTAAATTTTTACATCACTGCCTC CATCTATCACCACTTGTCCTAGTGAATTCACTCTAATAAATATTTACATATTTTCTACCAACACCAGTCCATGCTAACTC CCTTCTTCAGAGGTCCCTTTGATGTTAGAACAGCAAGATATTGGCCCCTAAGTCTGATCAGGCTAGTAGAAACAACATCA CATTACCAATTGCCATGATTCAAAACTTGACATCTCAAGCTAGCAGTAAACATCAGTTGCATTATTTTCTTCCTCAGGAT CCTCAATCGTGTTCACTGCCACCGTTAGATTGCAGATGTGATTTCTCACCCTCTTTAATTTATCACCTTCCTTCAACGTC CTCACCCTTGATTTCTGCAGCCATTTTGCTTTTTCAGCCCTATAAGTCTATAACCATACCTTAACCTTCCCAAGATGTGT ATTCGTTGTTGCCTCAATTGAGAAGTACTCGGTCCTTCTTCCTCCATTTTCACTAGCACCACTTGTAGTTCTTCCTCTAG CCCTTTGATTATTATATTTGTACCAGCACTATAATTTCCCATCCATGTCTTTATATGCCATTTCAATGTTTTTTCTCTGT GCTTCTTACTGTACCGTGACTCTGTTTCTACTCTGTATCCTGTTCGGCTTTCTGTTTTCCTTTTTCTTTGTTCTTGAGTG TCTGCATATGTAATTTTCTAAAAACAGTTTTTAAATAAAGTTTTCAAAAACTGCCATTAAACATTCCGTCCATTTTCAGT CTTTTGAAGAGTTTTTTGTGAGAGGCAAATGTTAGTTGATTGTTAGTAAATTAGTTCATTCATCAGGATTTGAACCCTGA CTCTTAAATACTCTTCATTTCCCTTAGCTCACTTGCTACTTTCTTTCTTTGTCCCATATTATTTAGTAAGTTTATCTCCC TAAAATATAAGTCACTCTTCATTATTTATGAAACATTAATTACTTTTTGACATATTTACCCTGATATTTAATAATATGAA AAATATAATGTGATTTGAAAAAGTTTTTGACTTGAAGAGATAAATTTATGGTAATCTAGGAAAAACAATAAAAACTTTTA TAAGTTAATCTCTTTTGTAGGATGATAAAATTGGAAGGTAGTGTATAAATTACTTGCCATCTACTTAATAGGCTCTATGC TTCTCTCGACTCTCTCGATAAAACCAACATCTTGATTAGATACTGAAGTGGAGATTGAGATGGATAAGAATAGGACTATG AGTAGGACAATAACGCAACACATGAACAAGGAGGAGGACTGAAAAAGACCTATGTATATGTCAAAATTATTAGAGGCATT GAAAGTAGAATTACCTTATAATTATTTGTTTCTATTGTTTGATTCTGAAAGTATAGTTGATTCATTTATGTCATGAGGTG ACAAAATCGCATCAATAGGAGACTAAATGGAGAGAAAATGTTTGAATCTGAAAACAAGTGCACATAATGGACTTGTGGAT GGGAAGAGAAAACGGAGAGAGTGAAAATGAAGAAATTAAGTAAAATATTATGTGAAGATAATGTAAAATGGAAATATTTT TGTGTTAGAAAACCATTACTCATATTGGCTTTGTTTTTTTTTTTCTCAGCTTCATACAGGGACAACTTTTAAGGAAAATG CCTATTTAAGGATATCGATTTGCTGGGGCACAATGTGCTAATTAGTAATTATGCACATAAAAAAAGTTAGAGGCTAGTTA TCCTTCTATTTGCTAGTTATCTTCATATATGTAAGATTTTATTCTTTTTCCGTTTGAACTCTTTTTATTATATGCAACAT AGATTATGTTTTATATATTGTTTTAAAATGGATTATTGACGGTGTTTTATATATGGTTTTT
CDS sequence (LotjaGi3g1v0086700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACAAAGGGGGATTCTCCAATCATGAATGTGTTGATTGGATGGTTGAGGAAGCGGTCTAAGAGAGTGAAGATCAT TTTGGGGGCATTGCTTTTTATTTTTGCGCTGTTGGCTCTGAAGTTCACTGTTGAAGATACAGTCCATCTCTACTTAGTCT CTCGAATAATTCATTTAGCAGGGATTATTGTTCTCATACACAAGCTCTTTTACCGCAAGACCTGCTCTGGTTTATCACTT AAGACCCAAGAGATCACAGCTTTATACCTAGCTTCAAGAATAGGTTTGAGCTATTTGATGGTGGGAAACATCCACACTGT GCTAGATTTCATAACTCTTGTGTCCACATTACTTGTTATATGGGCGATAAGATTCAGGTTTAAGTCATCCTATGTCAAAG AGCTTGATAGCCTGAAACGATCATTAGTGGTGGTTCCTTGTGCAATCCTTGCAGTCCTAATCCACCCATATACACCTCAT CCTCGCTTATCTCGAATCTCATGGGCATTTAGTGGGTATTTGGAAGCTGTTTCAGTTCTTCCTCAACTTCACTTTCTGCA AAATGCAAAGATAGTTGAAACACTCACTGGATATTATGTATTTGCTCTTGGGGTTTCAAGATTCTTGCAAATGGCTCATT GGATTATTCAGAGCTATGAAAATCCAGGGTTATACTTTTTTATGATTGAGAATGGAAATTTCTGGTTCGCGGCAGCATTT ATCGCGGAAATGGTTCAATCATTTATCTTGGCAGACTTTTGTTACTATTATATGAAAAGCTTCATACAGGGACAACTTTT AAGGAAAATGCCTATTTAA
Protein sequence (LotjaGi3g1v0086700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTKGDSPIMNVLIGWLRKRSKRVKIILGALLFIFALLALKFTVEDTVHLYLVSRIIHLAGIIVLIHKLFYRKTCSGLSL KTQEITALYLASRIGLSYLMVGNIHTVLDFITLVSTLLVIWAIRFRFKSSYVKELDSLKRSLVVVPCAILAVLIHPYTPH PRLSRISWAFSGYLEAVSVLPQLHFLQNAKIVETLTGYYVFALGVSRFLQMAHWIIQSYENPGLYFFMIENGNFWFAAAF IAEMVQSFILADFCYYYMKSFIQGQLLRKMPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 270 | 270 | 4.7E-115 | ||
| PANTHER | 1 | 270 | 270 | 4.7E-115 | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| TMHMM | 26 | 44 | 19 | - | – | |
| Phobius | 26 | 44 | 19 | - | – | |
| Phobius | 45 | 49 | 5 | - | – | |
| TMHMM | 49 | 71 | 23 | - | – | |
| PRINTS | 50 | 69 | 20 | 3.2E-16 | ||
| Phobius | 50 | 71 | 22 | - | – | |
| Phobius | 72 | 82 | 11 | - | – | |
| Pfam | 74 | 216 | 143 | 9.1E-37 | ||
| PRINTS | 77 | 97 | 21 | 3.2E-16 | ||
| Phobius | 83 | 101 | 19 | - | – | |
| TMHMM | 101 | 123 | 23 | - | – | |
| Phobius | 102 | 106 | 5 | - | – | |
| Phobius | 107 | 125 | 19 | - | – | |
| Phobius | 126 | 136 | 11 | - | – | |
| Phobius | 137 | 154 | 18 | - | – | |
| TMHMM | 138 | 157 | 20 | - | – | |
| Phobius | 155 | 165 | 11 | - | – | |
| Phobius | 166 | 186 | 21 | - | – | |
| PRINTS | 168 | 188 | 21 | 3.2E-16 | ||
| Phobius | 187 | 197 | 11 | - | – | |
| PRINTS | 190 | 204 | 15 | 3.2E-16 | ||
| TMHMM | 197 | 219 | 23 | - | – | |
| Phobius | 198 | 216 | 19 | - | – | |
| PRINTS | 204 | 222 | 19 | 3.2E-16 | ||
| Phobius | 217 | 235 | 19 | - | – | |
| TMHMM | 234 | 256 | 23 | - | – | |
| Phobius | 236 | 258 | 23 | - | – | |
| Phobius | 259 | 272 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein retention in ER lumen | The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ER retention sequence binding | Interacting selectively and non-covalently with an endoplasmic reticulum (ER) retention sequence, a specific peptide sequence that ensures a protein is retained within the ER. |
Expression pattern of LotjaGi3g1v0086700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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