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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0089600 |
| Transcript ID | LotjaGi3g1v0089600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase-like protein; TAIR: AT3G07330.1 Cellulose-synthase-like C6; Swiss-Prot: sp|Q9SRT3|CSLC6_ARATH Probable xyloglucan glycosyltransferase 6; TrEMBL-Plants: tr|A0A1J7HXQ7|A0A1J7HXQ7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0089600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:10120147..10125724) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTCGTGCTCCCAACTATGAGTTTCAGGAATGGTGGAACAAGCAGAGAGACAAGGAGAATCTCGACCTCTTGGAAGT TAAGGCGGACCAAGCCTCCTCCTCCCCTTTCACCGCCGTCGATGTCGGAGACATCGGCGGCGGAGCTGCTGGTGGTGGTC GGTCAGATCCGTCGGTGGAGAAAGATCGTGCACGCAGCGCGCGGCAGTTGAGGTGGGTTTGCTTGTTGAGGTTCCAGCAA ATTGCGTCGAATCTCTCATCGATTTCCAACGGTTTCCTCTTCTTCCTCCGCGCCGCGAACCGCCGGATCTCGTCGCATTC GCTGGCGGATTCAGGGACGTCGCGGCTCTACCGTGCGATCAGGGTGTTTCTGATTGTGGTGATTGGTTTGTTAGGGTTTG AGCTGGTGGCGTACTTCAAAGGGTGGCATTTTCGGCCGCCGTCGGTGGGGTCTGCGGAGGTGTTGGGAATGGTGGGGGTG GTTTATGCGCGGTGGTTGGAGATTCGGGCGAGTTACTTGGCGCCGCCGTTGCAGAGTTTGGCGAATATGTGCATTGCGTT GTTCATTGTGCAGTCTGTGGATAGGGTGGTTTTGATCTTGGGGTGCTTCTGGATCAAGTTTAGGAGAATTAGGCCTGTTG CTGAAGTGGACTATGAGGGTGATGTTGAGAGTGTGGAGGATTACCCTATGGTGTTGGTTCAGATTCCCATGTGCAATGAA AGGGAGGTAAGAAGATGTAGGTTTCTTAGTCCTTTTCAAACCCATTTTGTTCTTAAGTCAAATTCTGATGCTTGTGTTGT TTGTTTTGTTTTTTTGTCTGTGATCTATTCTGTTCTGTTGTTCCATTGACATTTTATTGGGGACATACAAATTTTGATGT CTTATGGGAAAGTGGAAGGGGTGGTTTTACTTGTCACATTCATGAAATGTACACTTTTGATGCCCATTTTGATGTCTTAT GGGAAAATGTCTGGTGCTGGTTTTTTTTATTTGTGTTGTAGTTGATTACATCACATTTGCTGTTTTCAGTGAATAGCATT GCCCTGATATATTCATGAAACTTAAATGTTTGTGATGGGTTTATTTCTAAGGTGAAAAGGACCTAAATGAGGTGGGTGAG TGCACAAGTATTGTTGTGGCTTGAATGGGTGGTGCATTGTGTCTTCCAAGGGTGTGTAGCTTGGGCTAGAGTGTGGCTGA TTGGTTGGAGCTTTGTAACGAGCTGATGGAAAGCGAAATGCAAGGGTTTTTAATTTATCTTAGAGCTTAGAGCTATGATA GAATGGGGGTTTGTCCGACTCACATCCTACAATATGATGCTCACTTCGTTATTATTTCTTTGAGTAATCTCCCCTATTTT TCATATCATGTCTCTTCTCTTATTTTCCTCATTTATTTTCTGGTCTCTCTTCTCACGAATCAATAAATAAATATTATTTT GATTGAAAGGAGGAGGTGCTTCCTTCTCATCAAATTCACTACTCAATTGAGGCTTCTATCTGTCTCTTCCAAAAAGCACT GTTCCTCCTCCTTGAAACATTAATTCAGCAAAGGCATTCTTCTTTGTGAGCGATTAGCTATTAAGAATCTGATATCCTAA TTCATATCACATTACTCTCCTGTGTTATCATTGTTTTTTTTCTTGTTTTTCCCATAGGTTTACCAGCAATCTATTGGAGC AGTTTGTATCATGGATTGGCCAAAGGAGAGAATGCTTGTACAGGTTCTTGATGATTCTGATGAAGTAGATACCCAACAGC TCATCAAGGCAGAAGTGAATAAATGGCAACAAAGGGGTGTTCGGATAATTTATAGACATAGGCTTATACGTACAGGCTAC AAGGCAGGGAATCTTAAATCCGCAATGGGCTGTGATTATGTTAAGGATTATGAGTTTGTGGCAATATTTGATGCTGATTT TCAACCTACACCAGATTTCTTGAAGAAGACAATACCTTATTTCAAGGTAATTTTATGTCTATAGATTCAAAAATTAAAAT ATTGTTGACTTGAGTAAATATAGCAGCTGATATTGGAGTGTCGAAGAGAACAATCATAGGTGCTTGATAGTGTTATAGTC TTATAGATACAGTGCTTATAATGATCCCTTCATGTTTTAGATTGAACACATCCTTAAAGTTAGTTTCCAAGTTTGGTGCA CTTTTGAATCTCAAGCATCAAGTACAATGTTATCTGTAGTGATCTAATTGCTATTCTAAATCATGTTAATCATTCAGAGG GAAGTGTAAATGTGTAATAAATTGTACACATGCTATGCCATCCACCATTATATATTGTATTTATATTTCTTGATATAATT GCACACCACTAATCAAAGGTTGTATCAATAAAATGTTCAGTTTCTCTAATCTCAACTATCTCCATCTTTACAATCTTCAA TTCTAAACTAGAATGAATAATACAGCTCTTGCAAGATGGCATCATACACATTAATGCTGCAACTGTTTTTGCTTGTTGTA AATTTATTCACAAGTCCAATATGAGTTGTGAAAGTAATTGATGACTTGTATTGGAATGTCAGTTCACAAATCATTTCAAG TTATAAAAAGATTTTAAATATCTTAGAACTATATATGTACTGTTCCAAATTTTCAACAGTCTAAACATGTTAAAAAATGC TTATTTGTCACTAGGTCATTTTAAATCTATATTCTTTTTGGGTCTGTACTGAGCATTGATCTAACCAATTTTTTGTACTT GTTTTTCTCTTATTGAAGGGAAAGGATGATGTGGCATTAGTCCAGACAAGATGGGCATTTGTAAACAAGGATGAGAACTT GCTTACAAGATTGCAGAACATTAATTTATCTTTCCACTTTGAGGTTGAACAGCAGGTGAATAGTGTCTTCATTAACTTCT TTGGTTTTAATGGAACTGCTGGTGTCTGGAGAATAAAGGCCCTTGAGGAGAGTGGTGGCTGGTTGGAGCGAACAACTGTG GAGGACATGGATATTGCTGTTCGTGCTCATCTCTGTGGATGGAAGTTCATATTTCTCAATGATGTTAAGGTGCACTATTA TATTTCAAATCTTGCGGCCTAATCAGAAATGTTTCAGAGTTTTATATGTCTATTATGCTTCTTGCAGTGCCTTTGTGAAC TTCCAGAGACATATGAAGCATATAAGAAACAACAACACCGCTGGCATTCTGGTCCAATGCAGTTGTTCCGTTTGTGTTTT GTTGATATACTTCGTTCAAAGGTATTGATTATTGTGCATATTATATTTTTATACCAGTTGAATTCTTTTAAATCCAGGAA GCCATTACTCTGTTATTATTATTAATAATAATTATAAAAAGAGTAAAATACACTCACCCCCCTCAAGATTTGTGAGAATA ACACTTAGCTCCATTCTTATCCAAAATATGCACTCCACCCCAATAATAATCTCACAATTACACTTAACTCAATTCTTTTT TAAATTCTACACTCCACCCCACCCCCTTTAACACCATCCAAAAGATGCTAACGGAATATTCTTTTAACTCAAAATTAATT AATTTAAATATAAATACTTTACATTATCTTCTAACTAAATAATAAATATACTTGTTTTTTAAAAAAAAAAGTAGCACGAG ATAATCATTGCTCATTCAAGTAAACAAATCCTTGTTATTTGGAGGGCAGCACAAATGATTTACAATAAAGCATGTTCTGG CCTTCTTGGTGTAATTCCAAATTCATAGAACTAGAACATTTCTTAAACGAGAACAACTTCTGTTTTACTTCTTCCAGATC TGAGTTACGTAGCTTCCAGCTAAGTTTGAAATCATCCTCTTCAAGGCAACAACATTTTCCATCACAAATTTAGCAAAACT TAACTCAATGTCAGAACCATCAAAACTCAAAAACTTTACCACTAAGTTTACTACAAAAATTTGTCAATAAGTTTACTAAA CTTTCAAAATATAATTGTGTTATGACGATATGTGATTACCTTAGTTATTAGGTTGTATGAGCACTTAAGCACATGACATT TTAAGTTCTAAAATATATGTTGTTTAAGGTTATACACAGGTATTAAGAACTCATCATTTGATAAATATTTTGACTGAAAT ACTCCATATTTAAATTTGAGTTATATTAGAGAGAGAAATATTTTGACCATAATAAACATCAAGTTTAATTATTATTTTTT ATTTGGAGGTATTCAAAATATTTTATAAATATTTAGAATATTTACAAAATTATAGTACAATTATTATTTGGTTAGAGGAT AATGTGATTTATTTATCATTTATATTTTAATTAATTAATTTGAGTTAAAGGAATATTCCGTTAGCATCTTTTGGATGATG TTAAAGGGGTGGGGTGGAGTGAAGATTTCAGAGAAGAATTGAGCTAAGTGTAATTATGAGATTATTATTGGGGTGGAGTG TATATTTTGGATAAAAATGGAGTTAAGTGTTATTCTCACAAACCTTGAGGGGGGTGAGTGTATTTTACTCTTATAAAAAT GGCGTCCTCACAATATAAATAAAATTTGGTCCTTATTAGTATGTCAATAATATGCTGTCCTCACTTAAATTTTGATCTCT AGGTCAATAATATCCCAAACAATTTGGTTTTTTACTGAGTGCAATGACGTTGTGTGATCTAGATAGCCGATCTGCATTAG TGGGGGGTACGGATTTTGTTGTTATTGCTGTTGTAACTAGGAATATGCTGTCCTGACCATACCATCATGTTCAAAGCTCT CTATTGTCTGTGTTCCCAGTCCTAGATTAGAAAATACTACTTAAATTTGTATAAAACTTTTGATTTTAGAAAACCTCATA TATGCTACTGATGCGCTTTAATAATTATTTACCCCTGTCTCGCACTGTATGTAATTATAACTAGGTTATGTCATCTATTT TATGAAAATATTACTTTTTGAAGGATCTACTGTTATGCTGATGTTAATGCCATTTGTACCAGGTTAGTTGGGGAAAGAAG GCCAATTTGATATTTCTGTTCTTCCTCCTGAGAAAGCTTATCCTGCCATTTTATTCATTCACCCTCTTCTGCATCATTCT TCCATTGACTATGTTCCTTCCAGAATCTGAGCTCCCAGCCTGGGTTGTTTGCTACATTCCCGGAATCATGTCTATCCTAA GTGTTCTTCCGGCCCCTCGGTCATTTCCATTTATAGTGCCTTACCTTCTATTTGAGAACACTATGTCAGTAACTAAATTT AATGCCATGATATCTGGATTATTTCGCTTCGGAAGTTCTTACGAGTGGGTGGTCACGAAAAAATTGGGAAGATCATCAGA GACAGATTTGGTTGCCTATGAGAAGGAATCTGATCCTCTAATGCGATCTACTAGTCTTCATAGATCATCCTCAGACTCCG GTATTGAAGAACTAAGTAAACTTGAATTGTCAAAGAAAATAGTGAAGACCAAGAGAAATCGTCTCTACAGGAAGGAACTT GCTCTTGCATTTATATTGCTAACTGCCTCAGTTAGAAGCTTATTATCTGCCCAAGGAATTCACTTCTACTTCCTATTGTT TCAAGGGGTAAGCTTTCTGGTTGTTGGTCTTGATTTGATAGGAGAGCAGGTTAGTTGA
CDS sequence (LotjaGi3g1v0089600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCGTGCTCCCAACTATGAGTTTCAGGAATGGTGGAACAAGCAGAGAGACAAGGAGAATCTCGACCTCTTGGAAGT TAAGGCGGACCAAGCCTCCTCCTCCCCTTTCACCGCCGTCGATGTCGGAGACATCGGCGGCGGAGCTGCTGGTGGTGGTC GGTCAGATCCGTCGGTGGAGAAAGATCGTGCACGCAGCGCGCGGCAGTTGAGGTGGGTTTGCTTGTTGAGGTTCCAGCAA ATTGCGTCGAATCTCTCATCGATTTCCAACGGTTTCCTCTTCTTCCTCCGCGCCGCGAACCGCCGGATCTCGTCGCATTC GCTGGCGGATTCAGGGACGTCGCGGCTCTACCGTGCGATCAGGGTGTTTCTGATTGTGGTGATTGGTTTGTTAGGGTTTG AGCTGGTGGCGTACTTCAAAGGGTGGCATTTTCGGCCGCCGTCGGTGGGGTCTGCGGAGGTGTTGGGAATGGTGGGGGTG GTTTATGCGCGGTGGTTGGAGATTCGGGCGAGTTACTTGGCGCCGCCGTTGCAGAGTTTGGCGAATATGTGCATTGCGTT GTTCATTGTGCAGTCTGTGGATAGGGTGGTTTTGATCTTGGGGTGCTTCTGGATCAAGTTTAGGAGAATTAGGCCTGTTG CTGAAGTGGACTATGAGGGTGATGTTGAGAGTGTGGAGGATTACCCTATGGTGTTGGTTCAGATTCCCATGTGCAATGAA AGGGAGGTTTACCAGCAATCTATTGGAGCAGTTTGTATCATGGATTGGCCAAAGGAGAGAATGCTTGTACAGGTTCTTGA TGATTCTGATGAAGTAGATACCCAACAGCTCATCAAGGCAGAAGTGAATAAATGGCAACAAAGGGGTGTTCGGATAATTT ATAGACATAGGCTTATACGTACAGGCTACAAGGCAGGGAATCTTAAATCCGCAATGGGCTGTGATTATGTTAAGGATTAT GAGTTTGTGGCAATATTTGATGCTGATTTTCAACCTACACCAGATTTCTTGAAGAAGACAATACCTTATTTCAAGGGAAA GGATGATGTGGCATTAGTCCAGACAAGATGGGCATTTGTAAACAAGGATGAGAACTTGCTTACAAGATTGCAGAACATTA ATTTATCTTTCCACTTTGAGGTTGAACAGCAGGTGAATAGTGTCTTCATTAACTTCTTTGGTTTTAATGGAACTGCTGGT GTCTGGAGAATAAAGGCCCTTGAGGAGAGTGGTGGCTGGTTGGAGCGAACAACTGTGGAGGACATGGATATTGCTGTTCG TGCTCATCTCTGTGGATGGAAGTTCATATTTCTCAATGATGTTAAGTGCCTTTGTGAACTTCCAGAGACATATGAAGCAT ATAAGAAACAACAACACCGCTGGCATTCTGGTCCAATGCAGTTGTTCCGTTTGTGTTTTGTTGATATACTTCGTTCAAAG GTTAGTTGGGGAAAGAAGGCCAATTTGATATTTCTGTTCTTCCTCCTGAGAAAGCTTATCCTGCCATTTTATTCATTCAC CCTCTTCTGCATCATTCTTCCATTGACTATGTTCCTTCCAGAATCTGAGCTCCCAGCCTGGGTTGTTTGCTACATTCCCG GAATCATGTCTATCCTAAGTGTTCTTCCGGCCCCTCGGTCATTTCCATTTATAGTGCCTTACCTTCTATTTGAGAACACT ATGTCAGTAACTAAATTTAATGCCATGATATCTGGATTATTTCGCTTCGGAAGTTCTTACGAGTGGGTGGTCACGAAAAA ATTGGGAAGATCATCAGAGACAGATTTGGTTGCCTATGAGAAGGAATCTGATCCTCTAATGCGATCTACTAGTCTTCATA GATCATCCTCAGACTCCGGTATTGAAGAACTAAGTAAACTTGAATTGTCAAAGAAAATAGTGAAGACCAAGAGAAATCGT CTCTACAGGAAGGAACTTGCTCTTGCATTTATATTGCTAACTGCCTCAGTTAGAAGCTTATTATCTGCCCAAGGAATTCA CTTCTACTTCCTATTGTTTCAAGGGGTAAGCTTTCTGGTTGTTGGTCTTGATTTGATAGGAGAGCAGGTTAGTTGA
Protein sequence (LotjaGi3g1v0089600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRAPNYEFQEWWNKQRDKENLDLLEVKADQASSSPFTAVDVGDIGGGAAGGGRSDPSVEKDRARSARQLRWVCLLRFQQ IASNLSSISNGFLFFLRAANRRISSHSLADSGTSRLYRAIRVFLIVVIGLLGFELVAYFKGWHFRPPSVGSAEVLGMVGV VYARWLEIRASYLAPPLQSLANMCIALFIVQSVDRVVLILGCFWIKFRRIRPVAEVDYEGDVESVEDYPMVLVQIPMCNE REVYQQSIGAVCIMDWPKERMLVQVLDDSDEVDTQQLIKAEVNKWQQRGVRIIYRHRLIRTGYKAGNLKSAMGCDYVKDY EFVAIFDADFQPTPDFLKKTIPYFKGKDDVALVQTRWAFVNKDENLLTRLQNINLSFHFEVEQQVNSVFINFFGFNGTAG VWRIKALEESGGWLERTTVEDMDIAVRAHLCGWKFIFLNDVKCLCELPETYEAYKKQQHRWHSGPMQLFRLCFVDILRSK VSWGKKANLIFLFFLLRKLILPFYSFTLFCIILPLTMFLPESELPAWVVCYIPGIMSILSVLPAPRSFPFIVPYLLFENT MSVTKFNAMISGLFRFGSSYEWVVTKKLGRSSETDLVAYEKESDPLMRSTSLHRSSSDSGIEELSKLELSKKIVKTKRNR LYRKELALAFILLTASVRSLLSAQGIHFYFLLFQGVSFLVVGLDLIGEQVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 80 | 80 | - | – | |
| PANTHER | 30 | 690 | 661 | 0.0 | – | |
| PANTHER | 30 | 690 | 661 | 0.0 | – | |
| Phobius | 81 | 99 | 19 | - | – | |
| Phobius | 100 | 119 | 20 | - | – | |
| Phobius | 120 | 139 | 20 | - | – | |
| TMHMM | 122 | 139 | 18 | - | – | |
| Phobius | 140 | 179 | 40 | - | – | |
| Phobius | 180 | 205 | 26 | - | – | |
| TMHMM | 183 | 205 | 23 | - | – | |
| Phobius | 206 | 488 | 283 | - | – | |
| Gene3D | 221 | 448 | 228 | 4.8E-65 | ||
| SUPERFAMILY | 228 | 507 | 280 | 9.38E-42 | ||
| Pfam | 323 | 517 | 195 | 9.7E-20 | ||
| Phobius | 489 | 518 | 30 | - | – | |
| TMHMM | 493 | 515 | 23 | - | – | |
| Phobius | 519 | 523 | 5 | - | – | |
| Phobius | 524 | 542 | 19 | - | – | |
| TMHMM | 535 | 557 | 23 | - | – | |
| Phobius | 543 | 640 | 98 | - | – | |
| Phobius | 641 | 660 | 20 | - | – | |
| TMHMM | 646 | 668 | 23 | - | – | |
| Phobius | 661 | 665 | 5 | - | – | |
| Phobius | 666 | 686 | 21 | - | – | |
| Phobius | 687 | 691 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0089600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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