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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0094800 |
| Transcript ID | LotjaGi3g1v0094800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRAS family transcription factor; TAIR: AT5G48150.1 GRAS family transcription factor; Swiss-Prot: sp|Q69VG1|CIGR1_ORYSJ Chitin-inducible gibberellin-responsive protein 1; TrEMBL-Plants: tr|I1KEE1|I1KEE1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0094800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:11757045..11761096) extracted from Lotus japonicus Gifu genome v1.2.
CTTATATTAGTTTAAAGTTAAAAAACTAAGAATACAAGTTCAAATTTTGTGCTATAGAATAGAGAAAGTCAGCAAACCCG AGTAAGTACAAAATTGTTGAACAAAGGCCAAATATGAACGTGTGGTTTGGTCGGCGTTTTTTCAATAGAACCATTCTTCC GTCAAACTTAGAATCCCTTTTTCTGTATTGTATAGATACTTTGAGTCACCTTTTTGAATTCTCACTTTGCGGTTTTTCAA ACAACCATTTCCCACGTTCGATAGCTTCATTTTCATAGCAAAACAACCCCACAATATCTAACATCAATGAAAAGGAAACT AAGCATGTTCTAGTTCTTCACCACGGTTCCTGCTATAACCAGAGAATCAAAGTCTTTTTCAACCGGTCAGTGTTGAATTC GGTTCATTTCTGAGGTGATTCTAAAACCCATTTCTCCTATTACTTTCCTAGTCATGTTACTTTAATGAAATATGGATACC CATGACATGTGTTCTGCTCTGTCTATTTTATCTCTTCTCTGTTTTTCTATCCCCTGTTTTCTTTTTCATTTATGTAGAAT TAATTGCCAATCTTTTTAGCTTTTGGATCAATATTTATGGTTTTCCTTGACTAATTAGTTAAGGCTCTTGCTGTATAAAT GAAGAAATAAACTTTGGTATGTTACAGTAATTTTTTTATTGATTAATGTTAAGTAACATTATATTCTGCTTCTCTAATTT GCAAAATCAGGGTTAGAACTTAGAATTAGTTTTTTTTGTTCAATGTATATTTTTTACTTGATAACTGGTTCGGGTAGGGT TGATTAATGAACTTTGAATAAGGAGTTACAAAGGAGATTCATGGGTTTTGAGCAAAATTTCTGCTTTGGTTGATGGGAAA TAGTCTGCATGCTGTTTCCACCATGAGGTAACAGAGTGGGGTTTACTGCAAAATAATATCAACAAGGGAAACATAAATGT GATAGGTATATACTTTTTGGGATTTGGTTCATTCATTTCAAAATAAAGATTTGAGCCTGCAATGAGGACGAATAACTTAC TTGGTATTATGGTTGTTGTTGTTGTTGTTGTTATTTGCTTCCTCCCTTTTCCTACTTGCAAATATGTGATGTATGTAGGG TCTGTTTTTCTCCTATTGCATATTACTATATGCATGTTTGAAAATCTTTCTATAGTTGATTTTAAAGTTAATTTTGGAGA GAAGCTTCTGTATGTTTGGGTGCCAGAATTGATTATGAAGAAAGAAAAAAATGATCCAAACATGCTATATATCAGTTTTG TTAGGCAAGGAAACTCATGTCTTGTTTTTTAGGATACTATTACATGAGAAGATTCTCTCTGTGAGGGAAAGTAATGATAA AATGTTTTTCAAACTGCAAGCACGGGCTGTTTGGAATTGCTTCCCTTTGAATAAATTCTAATGGTGTTCAATTTCCATCA CTTTCTGTGCTCTCTATGTTTTTGCTTGTCTGATTGACTCTAGATACGCATGTGCCTGTGTTATCTTTTATTGCTGATAA TCTGAATGGTGAGGGTGCACGCACTATTACTCTCTATCACAATAATCATTCTAACCATTTTCAAAAATGGTTTTCAAAAA ATTGGTGATCAAAAGACCAAATTCACCCAATTTCATCTATTTCTTGTGTTATGTCCCTCAATTATGTTTGTGTGTGTTCT GGTTCTTCCATATTTAAATGTTTCTCTGCTGTCCAGGCTAGATCATAGTTGTTTGTGAGGATGTAATTGTGGTGACATGA AAATATTCACAAAGTGCTTCTTTGTTTTTCAAAGGTTTATCTTCTGTTATTGGAAGTGTTGGGTTAAAAGTTCCTAGCAG AAGAATATTCAGCAGAAGATATCCAAGGAGGCTGCTTTTACCTGATGCCATCATCATAGTATGGACTCAAAGCAGTTTCT TAATTTCGATGTGACTAGCTCAGGAGGAATACCTCGTACATCATCTTATCCTACTGTTTCACCAATACCAAACCGGCTAC TTGGATCCTTGAAAATCGACACAGGAAACTCGCCTATATCATCCCTTTCTACTCAATTTGATTCTGATACTCTTTCTGCA TTAAGTGACAGCCAGGAAACCCTTTCCGGTGCCAGCCCTTCTTGTGATTCCTTGCAAGAAAGTAATCATCATTTCCATAG GAGCTTCCTTCCACAGAATGCATGTTGGGACCAGGAAACCAGACATAGGCTGTTGGAACTAGAAACTCGTTTGATGGAAC ATGATGGTGATGATGAAGTTACCACATCAAAGACTCCTTTTGGTGAAAGCAGTAGACCAACAACATCTGGCCAAAGAAAT AGGCCCTGGAGCCAAGAGGGTCAGGGATCAGAATATACCCAAAGTGAAGTTAAACGAGTCGAGAAACGTCACAAGTCAAT GGAGGTGGAAACATCAGCACAAGGCTTCCCAACAAGCAATTTGAAACAATTGCTGATTGTATCTGCCAAAGCCCTTTCAG AAAACAAAATGAAAGATTTTGATCATCTGATAGGAAAGGCCAGAAGTTGTGTATCCATAAGCGGGGAGCCGATACAGCGG CTTGGTGCTTATTTGGTTGAAGGGCTTGTTGCAAGGAAAGAAGCATCAGGGAATAACATCTACCATGCCCTCAGGTGCAG AGAGCCTGAGGGCAAAGACTTACTCTCTTACATGCAGTTACTCTATGATATGTGCCCATACTTAAAATTTGGTTACATGG CTGCAAATGGGGCTATTGCTGAAGCTTGCAGAAATGAGGACCAAATCCACATCATAGACTTTCAGATTTGTCAGGGAACT CAATGGACGACTCTCCTTCAAGCTCTTGGAGCCAGACCAGGCGGGGCACCGCACGTGCGGATCACGGGGATTGATGATCC TGTTTCGAGATATGCTCGAGGCGATGGACTAGAGGTGGTTGCGAAAAGGCTAGCCTTAATCTCAGAGAAATTCAGTATCC CAGTTGAGTTCCATGGTGTGCCTGTTTTCAGTCCGGATGTGACGAGAGACATGCTAGATGTTAGGCCTGGAGAGGCTTTG GCTGTGAACTTTCCTCTTCAACTGCATCACACTGCTGATGAGAGTGTTGATGTGAGTAATCCAAGGGATGGACTTTTGAG AATGGTGAAATCACTTTCTCCCAAGGTAGTCACATTGGTAGAGCAGGAATCAAACACCAACACCACTCCTTTCTTCAACA GGTTTGTGGAAACCTTGGATTACTACTTGGCAATGTTTGAGTCCCTTGATGTGTCTCTCCCAAGAAACAGCAAGGAGAGG ATCAATGTGGAGCAGCATTGTCTTGCGCGCGACATTGTCAACATCGTCGCTTGTGAAGGGAAGGAGAGGGTGGAGCGGCA CGAACTCTTCGGCAAGTGGAAGTCTAGGTTCACAATGGCTGGCTTCCATCAATACCCTTTGAGTTCTTATGTGAATTCCG TTATAAGAAGCCTGCTTAGGTGCTATTCAGAACACTATAGTCTTGTGGAGAAGGATGGGGCCATGTTGCTGGGATGGAAA AACAGAAATTTGATTTCAGCTTCAGCCTGGCATTGATAATGTTGTACTTGTATTGTACGTGAGCGCATATTGTGGCCAGC CGTTTACCGCTTAGTGCGAGCACCCACGGCGAGGGGATTAGTCATTGCTGTCAGCGGTGATACCCTAACATGCCCAAAAA AGATTAGTGTCGGATGTAATAGCTAATAAGTATAAGTATATGATACAGAACCAAAGAATATAGGATGTGATATATTGAAA TTTAGGATTATACACATGCATAGAATAAAATTCATCAAACATGACAAAATATGTAATTGAGATTTAAAAGAATTTGTACT TAGAGTATAGTTGTCAGACTTTATAAAACAAGTAACTGGTTCCAGTTCGATGACTTTGAAACGAGCACTAATTTTTTTCA TCATATTGAATTTTTTTTTTTCTTGTTTGTATTTGTCTAACAGAACATTTTGTCTAAATTGATATTGTCTTCAAAATAAA TTAGCAAGAGAATAAGTGTTCCTTATTTCCTCTGTTGATCTGTTGCTTTCTT
CDS sequence (LotjaGi3g1v0094800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCAAAGCAGTTTCTTAATTTCGATGTGACTAGCTCAGGAGGAATACCTCGTACATCATCTTATCCTACTGTTTC ACCAATACCAAACCGGCTACTTGGATCCTTGAAAATCGACACAGGAAACTCGCCTATATCATCCCTTTCTACTCAATTTG ATTCTGATACTCTTTCTGCATTAAGTGACAGCCAGGAAACCCTTTCCGGTGCCAGCCCTTCTTGTGATTCCTTGCAAGAA AGTAATCATCATTTCCATAGGAGCTTCCTTCCACAGAATGCATGTTGGGACCAGGAAACCAGACATAGGCTGTTGGAACT AGAAACTCGTTTGATGGAACATGATGGTGATGATGAAGTTACCACATCAAAGACTCCTTTTGGTGAAAGCAGTAGACCAA CAACATCTGGCCAAAGAAATAGGCCCTGGAGCCAAGAGGGTCAGGGATCAGAATATACCCAAAGTGAAGTTAAACGAGTC GAGAAACGTCACAAGTCAATGGAGGTGGAAACATCAGCACAAGGCTTCCCAACAAGCAATTTGAAACAATTGCTGATTGT ATCTGCCAAAGCCCTTTCAGAAAACAAAATGAAAGATTTTGATCATCTGATAGGAAAGGCCAGAAGTTGTGTATCCATAA GCGGGGAGCCGATACAGCGGCTTGGTGCTTATTTGGTTGAAGGGCTTGTTGCAAGGAAAGAAGCATCAGGGAATAACATC TACCATGCCCTCAGGTGCAGAGAGCCTGAGGGCAAAGACTTACTCTCTTACATGCAGTTACTCTATGATATGTGCCCATA CTTAAAATTTGGTTACATGGCTGCAAATGGGGCTATTGCTGAAGCTTGCAGAAATGAGGACCAAATCCACATCATAGACT TTCAGATTTGTCAGGGAACTCAATGGACGACTCTCCTTCAAGCTCTTGGAGCCAGACCAGGCGGGGCACCGCACGTGCGG ATCACGGGGATTGATGATCCTGTTTCGAGATATGCTCGAGGCGATGGACTAGAGGTGGTTGCGAAAAGGCTAGCCTTAAT CTCAGAGAAATTCAGTATCCCAGTTGAGTTCCATGGTGTGCCTGTTTTCAGTCCGGATGTGACGAGAGACATGCTAGATG TTAGGCCTGGAGAGGCTTTGGCTGTGAACTTTCCTCTTCAACTGCATCACACTGCTGATGAGAGTGTTGATGTGAGTAAT CCAAGGGATGGACTTTTGAGAATGGTGAAATCACTTTCTCCCAAGGTAGTCACATTGGTAGAGCAGGAATCAAACACCAA CACCACTCCTTTCTTCAACAGGTTTGTGGAAACCTTGGATTACTACTTGGCAATGTTTGAGTCCCTTGATGTGTCTCTCC CAAGAAACAGCAAGGAGAGGATCAATGTGGAGCAGCATTGTCTTGCGCGCGACATTGTCAACATCGTCGCTTGTGAAGGG AAGGAGAGGGTGGAGCGGCACGAACTCTTCGGCAAGTGGAAGTCTAGGTTCACAATGGCTGGCTTCCATCAATACCCTTT GAGTTCTTATGTGAATTCCGTTATAAGAAGCCTGCTTAGGTGCTATTCAGAACACTATAGTCTTGTGGAGAAGGATGGGG CCATGTTGCTGGGATGGAAAAACAGAAATTTGATTTCAGCTTCAGCCTGGCATTGA
Protein sequence (LotjaGi3g1v0094800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSKQFLNFDVTSSGGIPRTSSYPTVSPIPNRLLGSLKIDTGNSPISSLSTQFDSDTLSALSDSQETLSGASPSCDSLQE SNHHFHRSFLPQNACWDQETRHRLLELETRLMEHDGDDEVTTSKTPFGESSRPTTSGQRNRPWSQEGQGSEYTQSEVKRV EKRHKSMEVETSAQGFPTSNLKQLLIVSAKALSENKMKDFDHLIGKARSCVSISGEPIQRLGAYLVEGLVARKEASGNNI YHALRCREPEGKDLLSYMQLLYDMCPYLKFGYMAANGAIAEACRNEDQIHIIDFQICQGTQWTTLLQALGARPGGAPHVR ITGIDDPVSRYARGDGLEVVAKRLALISEKFSIPVEFHGVPVFSPDVTRDMLDVRPGEALAVNFPLQLHHTADESVDVSN PRDGLLRMVKSLSPKVVTLVEQESNTNTTPFFNRFVETLDYYLAMFESLDVSLPRNSKERINVEQHCLARDIVNIVACEG KERVERHELFGKWKSRFTMAGFHQYPLSSYVNSVIRSLLRCYSEHYSLVEKDGAMLLGWKNRNLISASAWH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 26 | 551 | 526 | 1.9E-262 | – | |
| PANTHER | 26 | 551 | 526 | 1.9E-262 | – | |
| MobiDBLite | 57 | 79 | 23 | - | – | |
| MobiDBLite | 113 | 173 | 61 | - | – | |
| MobiDBLite | 123 | 154 | 32 | - | – | |
| MobiDBLite | 155 | 169 | 15 | - | – | |
| ProSiteProfiles | 172 | 551 | 380 | 93.194 | ||
| Pfam | 181 | 550 | 370 | 1.8E-124 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0094800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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