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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0094900 |
| Transcript ID | LotjaGi3g1v0094900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U2 small nuclear ribonucleoprotein A; TAIR: AT1G09760.1 U2 small nuclear ribonucleoprotein A; Swiss-Prot: sp|P43333|RU2A_ARATH U2 small nuclear ribonucleoprotein A'; TrEMBL-Plants: tr|I3SUJ1|I3SUJ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0094900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:11763164..11768089) extracted from Lotus japonicus Gifu genome v1.2.
ATCCCTCTAGCTAGCTTCTACTCCTTTAGTGAAAAAAATATAGATTTTTTTTTGTTGGTTCAGCCTGGGCAAAAAACATT GATTTTTGTTTTTTAATTCAGCCTGGCCCATCCATCCCTTGAACCAAAAACAAAAAAAAACTTGGCCCATCCTCTCTTCT CTCTCACGATTCCATTCTCATTCTCATATTCTCATATTCTCATATTCTGAACCAAAAAAACACATTCAGGTATTCATTCA TTCTAGGGCGGCGCTTATCATCTCATCTGAAGTCAGTCAGTCAGTCAGTCAGTCAGTCCTACTCGATGGTGAGGCTCACT GCAGACTTGATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAAGAGCGCGAGTTGGATCTTCGTGGCAACAAGATTGC TGTAATTGAAAACTTAGGCGCCACAGAGGTATAATCTACTCCTTTTTCATATCGTTCTTGGTTACTTATTACACTTTGCT TCAATTGAAAAAACTTCGTTATGGCTTTCTTGCAGGACCAATTTGATACCCTAGATTTGTCTGATAATGAGATTGTCAAA CTGGAAAACATACCATATCTTAATCGATTGGGTACACTACTCATAAATAACAATAGAGTTACCAGAATTAATCCCAACAT TGGAGAGTTTTTACCGAATTTACACACGCTTGTTCTCACAAACAACAGAATTGTAAACCTAGTTGAAATAGATCCTTTAG CTTCCCTTCCAAAGCTTCAGTTTCTTAGTCTGCTAGACAACAATATTACAAAGAAACCTAATTACAGGCTTTATGTTATT AGCAAGCTCGACTCGCTCCGTGTTTTGGATTTCAAGAAAGTCAAAAATAAGGTAATCAATCTTTTATTTCTCACTACTTT ACTAGAGACGACGATTCGATCGATTTCTTATTACGAATTACACATACGTCGCAACTAATGTGCTTCTTCTGATGGTTATT TAAATTTAATAGGAACGGTTGGAGGCCAAAAACTTGTTTGGTTCAGAGGAAGCTATAGAAAATGCTCAAAAGACACCAGT GAAAACGATTTCACCTGCTGAAACTCCTGATGTTTCAGAAGCTACGGAGGAACAACAGACACCCAAAGTGGTTGCTCCCA CACCGGAGCAAATTATTGCTATTAAGGTATTTGATATGTGAAGTTATCGATTAATGTAAGGTTGTCATTATAGGGGTGGG TGACCATGTGACTTGCACATTGTTCATCTCGGATATTTAATTAATGCATTTGATGCATGTATCTGGCTAAAGTAGAGGGT TATACCCAGTGATAAAAATTTAGTAATTCATTAAACATTAAAGGAACAACATTGATCCAGTCAGTCCTGCTGTGCTGAGT TTCTTGCATATTAAGCTACGTGTATCCATGAAAGGTTTCTGTTAAACTAAATTAACCGTCTCAACTCTAAAATGCATAGC AGGTGTTTTGTGATTATCTGCTTTTGAGATTGCCTTATTTCAGGTGACTCAATCCTGTAAGTTAGAATTATGCTGTAAGA TGAATATGCTTGTTGTTCCTTCAGCGCATGTGGTAGTTCTTTATTGGATAACCATTTTCAAATAAATTACCTTGCATGCG TGTGTGACCGTCATCTTCTGCTAAGAAATCGTCTCTATTTGGGGTTATAGGGAAGGACCATCTTCATATATTAGAGAATG GTGCATCAAGCAGCTAATTGTGATTACTATGGTTTCATATTTTTACTCAATGCAGGCTGCTATCGTGAATTCACAGACCC TTGAAGAGGTTGCTAGACTTGAAAAGGTGATTGCTTTTTAGTTTAGATAATTACTTTTTGGATTTTAAATTGTGGTATTG TCATATACATTCATAACATAATATTGAAATTAGTTGACTTAGGACATTTTATTTATAACTAATAACCTGCTTTTAGAGAG GGAATCTGATGTTTCAAGTGGAGGCTCTCCCATGAAATGTCTTGTTTGTTATTGGAGCTCATAAACATTCTCAGTTTTTG TGTCAGCATTTGCTGACTCAGAGTATGCAAATTGAATTCTTTGCCATGTGAGGAGGGTGGGATTTGGTTTGTCATTAGTC GCGGAGCTCATCTTGTTTACCTCCGGTGGTTTGGGAGCTTTGTTATAATATTTTCTCTTGCTATATCCTTTTTATCATGA AACCATATTACCTGCTTAAAGCGCTCATCTCTTTCTACATTAATTTTTTTTTGTCTATTTTGAAAAGGCTGATGACTGTA ATCTAATCGGGTATATGATCACAGGCACTGAAGTCTGGTCTACTCCCTGAAGATTTAAAAAGCTTGAATGGCAATGTAAC GTTGGATAATGTTAATGAAAAAGGTGAAGATGTGGTTCATGATGAATCTAATGATACACGAGAGCAGAAAAATACTGATT CTGCTGCAATGGAACAGGTATCAATTTCCTGTTATGTGTATGTCAAACTTTTCTTCTGAATCTCTGGCACCTCAACATTC TTCTGAATCTTTGTTTTTTTTGTCCCCTCTCTAACACCTCTCCTAAAAAAAATCCCTTTTATGATATTTTACACTTCCAT GTGTTTTTCCATTTTAACATTCCGCTTCCCACTATGCTAGCTCTGTTCTCACTTTCCTTCCACGGCCCAATGGCTGTTTT GCTCTTTCACCTATTCCTTTTTTTTGTTTCCTTTTGTTTTTGTCTTGCTTTCTATCTTTTATTGTTTCTTGAACTTGATG GTGTTACTTTCTATTGAACTGAAGCTATGAAACTTATGGTGCTCTATTTATGATACCTGTTCAGATTATTGTTTTGACAT AGATTGCCAGTTTTTCCCTATTTTATTATCTGGCGCAGTTTTTTGAGTGTATATATATTTATTTATATGGCCACACGTTT GCCGTAATCTATAACGCCTTCCACTATATTTCTCTATTGGATTTTTTGCTTCCCACCATAAACCCCAAGGGGCTATTTCA TGGCATACCCCTATTTGAGTTCCCTTTTCTCACTGTCTCTGCCTGGACTTGCGGTGGCGGGAAAAATAACACCATTGAAC TAACAATGCAGAAAGATGAGTGTACCAGCGGAAGATGAAAACATACTGAATAACAGGAGAAAAAATAGGAAGAACACAAG AAGTAGATGCTAAATGCTATCTTCGTTCCTGAAGTCCATGGCTTATCCCCATTATTCTAGATTTCTAACTATCCTTCAAG GTCATGCGCCTTCCCTATTTGAAAGCACCTCAATTCTCTACATTGCTCTTGGGCCCCATTAAATTTACACTTAGCTTTAC TGCTTCTCTCCCTAATGCTTCTCCACGTGTCCCTTTTTCCCACTTCTGCAATATACCATATCTTGGGGCCATGGCTCTAC TGCACAGCCACTACTGGGCCCTCAGTTCACTGTGTTGGGCTCAAGGGTCTCAACAGCATGTCTTGTTTTGCATTCTATTT TGCTGCTATTTGTTGCTTTTGATTAAATGTGGCTTTTCTATGTGAAGATTTAATCACAACATCATGTTTTCTGTTTCTTT TTTTTGTTGAGAATTTGAGGAAGAATTTGAGATTTTTATTCAATTCCATCCCATTCTGCTCCGTTCCATTACATTCTGTT TTGTTCCATTATCTTTTCCCTATGGAGGACTTAAACCTATGGCTTAATTGGACTTTTTGTCCTTGGTCTATCGTGATTGT GCGATTTGGGTCCTCAATTCTCAAAACGATCGATTTGGGTCCCACATGCAATTTTGGTCATGCCGTCAGTGTTCTGTCCA AATGCTAATGGAAGCGGGTGATGTGGACCTCATTTAATGATCTGACACCCAACAAAGCATCCACATAGATAATTAATTTA CAAATAATAAAATATATGTACCTGTTGAAATATTCAATATTCAAACTGTAAGAGGAAGGAAATGTTAATTTTGTACACCA TATCTTTTCATGTTTTCCCATGCTAGTAATATTGTATGTAATGCTTCAATTTTCATTACATTTTTTTGCAGGATTAAGTG AAGATATTGGCTGTCCCGGCACTCTTCACTCCACTTCAATGTTGATTTCTGGAGTCAAAATCTTTGTAACTTTCCATGAA ATGTACTGGAGGTTTCAATTTCCCTCATGGTGATTGCCTGCTTTAGCGCTTAATGTGTTGAATTTGATTGCCTTTACATT TCATGTATCATTGGGGCATTTTTGCCCCTAGCCATGTGAATTTCTGGTTTAAGACAAGTAATTTTTTTTGTAATCTTTTG AGTAGATGACGATGTGAGCTGAAAGCCTGAAACATCATTTTAATTAGATTTAAATCATGTACCATATTGTTATTTATTTG GGGGGACAGTTCCTTGCAAAAAGGAGAAAGATAACAACGGCATAGTTGTCACCAGTAACCTATTGAAGGAGCTAAGTAGC TTAAGTTCAAAATGGTCTCCCTAGTTATGATGAAATCAACTGGGATGATTTTTATCAACACAAGACCCTTAACAAAAAAA CCATACACGTCCATATGGATAAACAGTGCTATTGCTGGCTTTATTCCGTGGTGGTTGCTTATGTTCATTGGCGTTCAGGG TTTACATAGGGTTTGGCCTCTATGCAGGTTATAAGATGTTCACGCAGTGCCCTGGAATCTAGAGGGTAGCTGCATGGGTC CGCATGCTGGTGTTGTTGCAATTGTTCCTCAATTTGCTAAATAGTGAACTTTGGTATTTGATACTTCTGAAACATCCAAG TAGAGGGTGGGGGTCCTTTGTCATATATTGAAGGGTGGAATCTTAGGAGGTTGCCTCTGTTTCTAGATAAAGTAGTAGTT TGGAGGACCTTGTTATTTATCAATTCGTGTCTTTTGCTTGTGGCTGCGTTTGAGACTTGGCCTTGTAATAGGCCCTTTTT CTTGTCTTAGAATGTCTATTACCTTAAACTTTATTTTGCACTTGGG
CDS sequence (LotjaGi3g1v0094900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAGGCTCACTGCAGACTTGATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAAGAGCGCGAGTTGGATCTTCG TGGCAACAAGATTGCTGTAATTGAAAACTTAGGCGCCACAGAGGACCAATTTGATACCCTAGATTTGTCTGATAATGAGA TTGTCAAACTGGAAAACATACCATATCTTAATCGATTGGGTACACTACTCATAAATAACAATAGAGTTACCAGAATTAAT CCCAACATTGGAGAGTTTTTACCGAATTTACACACGCTTGTTCTCACAAACAACAGAATTGTAAACCTAGTTGAAATAGA TCCTTTAGCTTCCCTTCCAAAGCTTCAGTTTCTTAGTCTGCTAGACAACAATATTACAAAGAAACCTAATTACAGGCTTT ATGTTATTAGCAAGCTCGACTCGCTCCGTGTTTTGGATTTCAAGAAAGTCAAAAATAAGGAACGGTTGGAGGCCAAAAAC TTGTTTGGTTCAGAGGAAGCTATAGAAAATGCTCAAAAGACACCAGTGAAAACGATTTCACCTGCTGAAACTCCTGATGT TTCAGAAGCTACGGAGGAACAACAGACACCCAAAGTGGTTGCTCCCACACCGGAGCAAATTATTGCTATTAAGGCTGCTA TCGTGAATTCACAGACCCTTGAAGAGGTTGCTAGACTTGAAAAGGCACTGAAGTCTGGTCTACTCCCTGAAGATTTAAAA AGCTTGAATGGCAATGTAACGTTGGATAATGTTAATGAAAAAGGTGAAGATGTGGTTCATGATGAATCTAATGATACACG AGAGCAGAAAAATACTGATTCTGCTGCAATGGAACAGGATTAA
Protein sequence (LotjaGi3g1v0094900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTLDLSDNEIVKLENIPYLNRLGTLLINNNRVTRIN PNIGEFLPNLHTLVLTNNRIVNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVISKLDSLRVLDFKKVKNKERLEAKN LFGSEEAIENAQKTPVKTISPAETPDVSEATEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGLLPEDLK SLNGNVTLDNVNEKGEDVVHDESNDTREQKNTDSAAMEQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 175 | 175 | 1.9E-45 | ||
| Pfam | 1 | 171 | 171 | 2.7E-76 | – | |
| PANTHER | 1 | 278 | 278 | 1.6E-120 | – | |
| PANTHER | 1 | 278 | 278 | 1.6E-120 | – | |
| SUPERFAMILY | 12 | 159 | 148 | 1.46E-28 | – | |
| ProSiteProfiles | 20 | 41 | 22 | 6.657 | ||
| ProSiteProfiles | 43 | 64 | 22 | 7.658 | ||
| ProSiteProfiles | 65 | 86 | 22 | 4.994 | ||
| ProSiteProfiles | 89 | 110 | 22 | 7.589 | ||
| ProSiteProfiles | 114 | 135 | 22 | 6.588 | ||
| MobiDBLite | 172 | 200 | 29 | - | – | |
| MobiDBLite | 241 | 280 | 40 | - | – | |
| MobiDBLite | 253 | 280 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0094900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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