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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0095600 |
Transcript ID | LotjaGi3g1v0095600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | transmembrane protein, putative (Protein of unknown function, DUF538); TAIR: AT5G54530.1 serine protease, putative (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|I3SN87|I3SN87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0095600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:11912110..11914609) extracted from Lotus japonicus Gifu genome v1.2.
CACCAACCAAGGGCAACATAGTAACTTCACAACCTCACAGCCTTTCTTAAACAATCTTTACATTTTCCTCTCTCTCTCTC TCTCTCTGTGAAAAGAAACTCCCCTTAAACCCCCCATGTTCCTTTCTCTTTTTGGTCTAAGCAGCATCATCCTCATCCAT GGCCATAGCATTCTTTAACACTCCATTCTTCACACTCCTTCTATTCTTCTCTCTCCTCTCACTCTCTCTCTCCTCCTCCA TCCACGACCTCCTCAAATCAAAAGGCTTACCAGCTGGTCTCTTACCATCAGAGGTAAAATCCTTCACCTTCTACGAAAAT GGCCGCTTGGAAGTCTTCCTCAACGCACCATGCCTAACCAAGTACGAGAACAGGGTCTACTTCGAACGCGTCGTCACCGC CAACCTCACCTACGGTAGCCTCATCGGTGTGGAGGGTCTGCAACAAGAAGAGCTTTTCGTTTGGCTTCCTGTTAAGGACA TCATCGTTGATGATCCTTCTTCTGGGTTGATACTCTTTGATATTGGTCTCGCTCATAAACAGCTCTCACTCTCTCTGTTT GAAGATCCACCCCACTGCAAACCTGAAGGTAAATTGGGTCTCTTTTTCTTGTCCCACATCGAACATGCTCAATTCTGGAA CAGCTTTTACTCCTTGTTTAACTGGGATCTAGCACAATTTGGTATCACTTTGCATAATTGAGTAATTTTGGTTTTTTCAT ATTCAATGGTTCTGAGTTTGTATTAGCTTTTGTTTCTTGGTTTCAGATTGTTTTTACCAGTTTTGGGAGGAAGATGAGGG AGTGTGAAGTGTTTCTTTTGGCATTTGTTATTAATTGTGGTATCTGTTACTCTTTTTTTCATAAAAGAAACAGTTGTTTT TAGTTTTTCTCTTGGTTAGAGTAATGACTATGGTTTCAGAAACTGAATATTTACAGATTCACTGTAGTTAATTAATGCAG TTACTTAGTAAAAACTTTCAATATTCATTTGCTTCCTCTGAATTCATTTCTTGTCTCTTCTTATCCCAATTTTCCACACT CCCTTCAAATTTGGTTTAGACTTTACTCTTAGGACTGCATTACTTTTTATAAGAACTATAGTTATATCTATGGTGAATGT GGGTCTTTAATAAACACCCCTTCAAAAACAAGACAGGCATGGAAATCTTCAATCACCTTTGTATTTTGCAAACCGAAGTA AGAAAAGAAGGATAAACCAATGAGAGGAACTTTCCTCTGTGTTAATTAAAGAAAAACAAAAAAACATTGTCTTACATTAT ATGTCTGATTCATGAAGGTCATGCAAATTGCAACATCACTGGTAGTATTTTCAGGCCTGCTGTGAAGGTCCAAAAAGGGG TGGGGTTAATTGCTGATTTTTTTTCAGTTTTTATTTGTTTCTTAGTTGTAATTTTTGTCATCATTGTGAGCATTTCTAAG TCTTTCAAAGTTAAAAACAGATAAGTAATTGTTTTTTTTTTGGTGTGTTTCATGTTTGAGGCTAATTGGGTAGTTGTGCA GGTGGGCTGAGGAATCATGTGAGGAAGGAGAAAGGGTTCTTTGAGGCTCTGAGGTAGAAAAAGATGCCAACCTGTTTTCC GGCTTCAGTTATTGTCTTTTCCTATGTCATCATGTTTATATACTTTTTAGCTTTTTGCAATTATAGTCATAATATGTGTA GGTGTTTTTAGTGTAGAGGTTGAGTTGGCTGAGATCATGTAAAGATGTTGGGGGAGGAAAAAAAACAGTGGAATCTGATT TTTCTAATCAAATTTACAAGCTGTAATCTTCTAACTTTTGTTGATTCACTACTTGCTCTGATCTGTTTGAAGATAAAGGA TATGATGAGTGTCAAAGCAAAGGATCAAAGTATAGTTAAATCTTGGTTATGTTTTTTCAAAGCAATGAGTTGGAAACTTT AGAAAATGGGGAAGTAAAAGTTGTGTGGAATATGTTAATTGTCTCTCTCTTTATTTTTGCCTTTCTGGCTTATTCATATT ACAACTGGAGTTTTTGTTCTTTGCTTTTTGTTTGGGGAATAACAGATTGAAAGAATTGATAATTGGGATTCTTCCCAGAG GATTTTTTTCATCTCTTGGGCCCAAAAAAGTTTTCTGAATCATCTAGGCAAATACATAAAATAGGAAAAAATAATTGAAT CTTGAGCTCTGAGATACTTGAAAGCAGAAAAGTCTCTCTCTTGAAAAGACATGCATGCAAATCTTCTTTTTGGTGTCTCA ACTTTGAAAATTATTCTTAATTGGGGTTATTTTTTGTAATGCTTAAAATAAGCTTAATTCAAATTTTAGTATGTGTTCAT GTGAGATGTACTGTAAAATCTGAAATACTTTAGAGTTAAAGGAGCTAATCCCAAATTTCCTCATGATAAAGGAAGTTATA AATTTTTTTTCGTTCTTTACTGGTGTTGTCACCCATTTAGGATACCGTTGTATCTTTCTCAACAAATGTCTTTTTTGTAA TTTGGATCTGTAATATCATC
CDS sequence (LotjaGi3g1v0095600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATAGCATTCTTTAACACTCCATTCTTCACACTCCTTCTATTCTTCTCTCTCCTCTCACTCTCTCTCTCCTCCTC CATCCACGACCTCCTCAAATCAAAAGGCTTACCAGCTGGTCTCTTACCATCAGAGGTAAAATCCTTCACCTTCTACGAAA ATGGCCGCTTGGAAGTCTTCCTCAACGCACCATGCCTAACCAAGTACGAGAACAGGGTCTACTTCGAACGCGTCGTCACC GCCAACCTCACCTACGGTAGCCTCATCGGTGTGGAGGGTCTGCAACAAGAAGAGCTTTTCGTTTGGCTTCCTGTTAAGGA CATCATCGTTGATGATCCTTCTTCTGGGTTGATACTCTTTGATATTGGTCTCGCTCATAAACAGCTCTCACTCTCTCTGT TTGAAGATCCACCCCACTGCAAACCTGAAGGTGGGCTGAGGAATCATGTGAGGAAGGAGAAAGGGTTCTTTGAGGCTCTG AGGTAG
Protein sequence (LotjaGi3g1v0095600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIAFFNTPFFTLLLFFSLLSLSLSSSIHDLLKSKGLPAGLLPSEVKSFTFYENGRLEVFLNAPCLTKYENRVYFERVVT ANLTYGSLIGVEGLQQEELFVWLPVKDIIVDDPSSGLILFDIGLAHKQLSLSLFEDPPHCKPEGGLRNHVRKEKGFFEAL R
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 9 | 9 | - | – | |
Phobius | 1 | 25 | 25 | - | – | |
SignalP_EUK | 1 | 25 | 25 | - | – | |
TMHMM | 2 | 24 | 23 | - | – | |
SUPERFAMILY | 4 | 142 | 139 | 9.94E-37 | ||
Phobius | 10 | 20 | 11 | - | – | |
PANTHER | 10 | 154 | 145 | 9.6E-79 | ||
PANTHER | 10 | 154 | 145 | 9.6E-79 | – | |
Gene3D | 15 | 136 | 122 | 1.6E-22 | ||
Phobius | 21 | 25 | 5 | - | – | |
Phobius | 26 | 161 | 136 | - | – | |
Pfam | 29 | 135 | 107 | 3.3E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0095600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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