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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0099100 |
| Transcript ID | LotjaGi3g1v0099100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell number regulator 6; TAIR: AT2G45010.1 PLAC8 family protein; Swiss-Prot: sp|B6SGC5|CNR6_MAIZE Cell number regulator 6; TrEMBL-Plants: tr|A0A1J7IKI0|A0A1J7IKI0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0099100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12329107..12333119) extracted from Lotus japonicus Gifu genome v1.2.
CGCCACGTTAAAACTTGTAAGAAAAAAAGATTGAAACTTGACACCAGTGAGGACGAAATCTCATCTTAACTTCACTTCAC GTTTCAACATTGCTGCATCTTCTTCAGTTTCGTAGAAATTTCCGCAAGAGTTACCCACCGATTTCGAAGGTTTGGATAGA TGAGATCTTGAAATTCACATTTTCTCAGTATCCAAACGTGATTCATCGTTGATTTTTCTTCCTTTCTTGGTTTTGGTTTT GTGTGATTAGATGATGGAGGAAAGGACTCAATCGCGCTACGTCAAACTCACCAAAGATCAGCTCCCTGTTGAAGATATCA ACCCTGGTGAACTCAATCAGCCAATTGAGGTTCCGCAGGTTCGGATTCCTAGCTTTCATTCTCACACATTGCTGTTTTTT TCATTGAATTTTGATTCATGGGTTTGCTTTGGTTTCTGGGTTTTTCTCTGATTTCTAGAATTCGCACAATTGATTGATTT TCTTGTGTATTAAGGATTAGGAAACCTTGTTCAACGGTTTTTGGGTGCTGTCTGAATCTTGTACATGAAATTCTAGTCTG TGAGTGGCCCAATGTTGTTTGTATTTGCCAATGTGGAGATGGTACATTTCGATTTTATCCAATGGCAACATGGGTTTAGG TAGCATTTTAACAAAATTAAGTTTATGGTACTGATTTGATTTTTATGCATAAAATTCTTTGACATTGAGGCCTAGATAAA GCAATGTGTGACCTGTATTAAGTTTTGCTGAAATTTAATTTGATGATTATGGTCTGGATTTGGGTGGTGTAATTGAATTG CGCTATATTATAATTTGTAAAAGATCTTGAGGCTTGGTGTTGTTATGTTAGTATTTGGTTAGAGAATGTTCAATTGGATG TTTGTAACAAGATGGTAACTTGAAGTCTGAAGTGAATGGGCATAGTTTATGCTTCATTGTACATTTGACTTGCATGTGAT TTCTTGTATTTCAAATCATTGATTTTGAGACTTTGTTGGGTCTTGGGTTGCTCTGTTCAAATAAACTGGTTCTCTCAATG GATTTTGCATATCACACTGCTGACTACTCAGTACTCACTGCACAGTACTGTTTAAATCACTGGTTTTATAGTTATTATGC ATAAAGGATGGTTCTCTATATCCATGCTGGTACCATGAAAATGGAAGAGGCAAAAGGCGGGAAATCTAATATCCGCTATA CAATCCAGATTATATGAATATTTTCACATAGTTCTAATGTTACACCTCTTTTTCCCCCCTGCTTGAATAAATAGTAAGGG GAAGAAAGGTTCTTTTAATATATCTTTTTTTTTTTTGTGTGAAGATGTCTTATCCTCTTTCTCTGTTAACCTATTCAATA ATATTTCTTTCTCTATAAAGTAGAATGGGAAGGCATGGGATTATAAAGACCACATTTTTATATAGGCTGATGAGCTTTTC TATGTAACTTATAATATAGTAAATAACAAGCTTTTAAAATACAAAGCAAAGCAGTTTGCACTCATGTCCCCCTCAAATTG GATTCAACCAAAAGTAGAACTTGTGGGGGACTGAGAGGTAATGGTTCCCCTTACATTCCCCTCCCTTTTATAAAATTATA TACTTCCAAACAGAGGTAATTAACTAATTATTCCTTTTAAATCCCTTCACCTTCAATCCCCCTAATTATGCCTCTTCCAA ACGCTCTAATAGTTTATAGATTATAACCTATCAGAATTATAGTATGTCTTTCCATTCTGACAAGAATAGTTCAAAATAAA TTGTTCTTGAGTTGCACAATGAAGAACTATAGCAAGAAAACAGTAAGCCTCATCCCCCTAGGTGGGTTCAATCTCAAGCC CAGAATACAAGGTTGTCTTCAATAGTGGCAGCCAACACTCAACTATACCAGATCTTTTATGACATTGTGATTTGTGAGAG AAAGCAAAATCACATTCTCGAAAGTTGTGCTTGTGGGTCTTTTGGGTGATTGTTTATATAAGTTGGTACACAGCTAATTG CTTATGGTTTTTAATACTTTACAGTTGGCTGTTCACAAGTGCATGGAATGTGGGCAGCCATTACCCGAAAGCTATGCACC TCCTGCTGATGAACCTTGGATGACTGGGATCTTTGGATGTGCTGAAGATAGGGAAAACTGTAAGTTATCAAATTATACTA AAGTCGGGATGTTATCTGTTACCTATATTGGACTAGTCAATTAAGTTTAGGGTTAAAAGTAATTTAACTTCATATGTTTT CTTTGAGCAATAATCTTTAGTCCTTACCTTAAAAAATCTTCATATTTTATATGTTGAATTATGATTGGACCATGCAGTAC ACTGGAACACAGGATCTATTTGTATGGCTTTATAAGCAGTATTTACTGTTGCAAACTTGCATTGGCTAAGCAGAAAATTG CTTGCTTTTTATACCATTCCACCTTAATTGCAGGCTTGACAGGATTATTTTGTCCTTGTGTATTATTTGGGCGTAATGTG GAAAGCTTGAATGAAGATACTCCTTGGACTGGGCCATGTGTCTGTCATGCCATTTTTATTGAGGGTGGAATTGCTCTGGC AACTGCAACTGCAATCTTTCATGGTCTCATTGACCCTGGGACGTCATTTCTCATTTTTGAGGGTTTATTTTTTACTTGGT GGATGTGTGGCATTTACACTGGTCAGGTTCGGCAATCTTTACAGAAGAAATATCACTTAAAGGTATGTTTTGAATTTCTT TCGACTTGGACTGGTAGTCACTTTGAAGAATCAATTTGTTTTTAAAATATTCCTGCGCAGATAAGTTGCTTCTGATTATT GCAGATGAGTAATGTAACATCTATTAGATGTTAAAAAACAACATCCCTTTTGTAGGAGTCAATTCTATTATCAAGCCTTG CCTCTATTTTCTTAAGTGAACAAAATTATGATGACATGACATTTTTTACTGGAAAAAACGATTATGATCTGCTTAATTAG AAAACAAACAAAGATGCACCTGCTGGCCTGTAATTTAACCATGAAATCCTTATCAATTCCCTGTATGGACATGATTCTTG ATTTCTAGTAAAGTTCCAAACAAGTTTGTAAGAAGAGGGCCATTCTTTGGTAGAGGTTATTTCCCTTAAAAGGATTAGGG ATTTGGGTTCTAAGTTCTAACGCTAACATGGGTCATGGGGGGGAGAATCCTACATAATTCAAGGTTACCACGAGGCCATA ATTAATAGCTACTTTAAGAGCATTTGTTTTAGTGCATGTTTGGAAATCCTTCTATAATTGATTCTGACATCTGAAGTCAA AATCAATTACGGGCAGAAACTTCTATCTATGAGTAACTTCTGAGTGTTAAAATTGATTATGAGGAAAGAAAAACTGATTC AAAGTTCAAACATGCGTTTACTTGTGTTTCCTTGCACATCTAGTTGCACAAGATTTTGATAATTATTTCCTTTAGCCTTT TTCATTTCCCTGGACATAAATCTTATCTTGCTTGAAGATTGCCTCATTCTTTTGATGTCTCCAGAACTCGCCTTGCGATC CATGTTGTGTACACTGCTGCATGCACTGGTGTGCCTTGTGTCAAGAGCACAGGGAGATGAAGGGACGTCTCTCTGAAAGT GTTGTCTCAGAAATGACCCTTGTAAATGCTCCTCCTGTTCAAGAGATGAAGTCTACTGATGACAAGGAAAGTCCTGAAGC CTCTTCTACTAACAACAATCACCATACTGATATGGAAATGCAAGCTCTATAGATAATATGAAAAAGAATGACATGTATTA TTGAATTATGTTCTTTTGAGATATATCGACCTTTGGGCAGAGTTCCCTATGTTACATTAGACATGTAGACCATAGATCAC ATTTAGACATCTCTCTTCTACATTTAGGTGGCAAATTATACTGAATCCTTTTTTTTTCTCTTATCCGTTGGCCTATCTAT TCTGTCTTCTGATTGTGTTATTTTCATTTAGTTTTCAACAAATTTTATAATTGCCAATAATAAATGAAACAATGATGTGC CTTTCAATATGAG
CDS sequence (LotjaGi3g1v0099100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGGAAAGGACTCAATCGCGCTACGTCAAACTCACCAAAGATCAGCTCCCTGTTGAAGATATCAACCCTGGTGA ACTCAATCAGCCAATTGAGGTTCCGCAGTTGGCTGTTCACAAGTGCATGGAATGTGGGCAGCCATTACCCGAAAGCTATG CACCTCCTGCTGATGAACCTTGGATGACTGGGATCTTTGGATGTGCTGAAGATAGGGAAAACTGCTTGACAGGATTATTT TGTCCTTGTGTATTATTTGGGCGTAATGTGGAAAGCTTGAATGAAGATACTCCTTGGACTGGGCCATGTGTCTGTCATGC CATTTTTATTGAGGGTGGAATTGCTCTGGCAACTGCAACTGCAATCTTTCATGGTCTCATTGACCCTGGGACGTCATTTC TCATTTTTGAGGGTTTATTTTTTACTTGGTGGATGTGTGGCATTTACACTGGTCAGGTTCGGCAATCTTTACAGAAGAAA TATCACTTAAAGAACTCGCCTTGCGATCCATGTTGTGTACACTGCTGCATGCACTGGTGTGCCTTGTGTCAAGAGCACAG GGAGATGAAGGGACGTCTCTCTGAAAGTGTTGTCTCAGAAATGACCCTTGTAAATGCTCCTCCTGTTCAAGAGATGAAGT CTACTGATGACAAGGAAAGTCCTGAAGCCTCTTCTACTAACAACAATCACCATACTGATATGGAAATGCAAGCTCTATAG
Protein sequence (LotjaGi3g1v0099100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEERTQSRYVKLTKDQLPVEDINPGELNQPIEVPQLAVHKCMECGQPLPESYAPPADEPWMTGIFGCAEDRENCLTGLF CPCVLFGRNVESLNEDTPWTGPCVCHAIFIEGGIALATATAIFHGLIDPGTSFLIFEGLFFTWWMCGIYTGQVRQSLQKK YHLKNSPCDPCCVHCCMHWCALCQEHREMKGRLSESVVSEMTLVNAPPVQEMKSTDDKESPEASSTNNNHHTDMEMQAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 107 | 107 | - | – | |
| PANTHER | 2 | 223 | 222 | 1.0E-121 | – | |
| PANTHER | 2 | 223 | 222 | 1.0E-121 | ||
| TIGRFAM | 60 | 190 | 131 | 2.3E-32 | ||
| Pfam | 61 | 188 | 128 | 6.4E-24 | ||
| TMHMM | 105 | 127 | 23 | - | – | |
| Phobius | 108 | 127 | 20 | - | – | |
| Phobius | 128 | 132 | 5 | - | – | |
| TMHMM | 131 | 153 | 23 | - | – | |
| Phobius | 133 | 151 | 19 | - | – | |
| Phobius | 152 | 239 | 88 | - | – | |
| MobiDBLite | 208 | 239 | 32 | - | – | |
| MobiDBLite | 225 | 239 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0099100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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