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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0099100 |
| Transcript ID | LotjaGi3g1v0099100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell number regulator 6; TAIR: AT2G45010.1 PLAC8 family protein; Swiss-Prot: sp|B6SGC5|CNR6_MAIZE Cell number regulator 6; TrEMBL-Plants: tr|A0A1J7IKI0|A0A1J7IKI0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0099100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12329388..12332866) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGAAAGGACTCAATCGCGCTACGTCAAACTCACCAAAGATCAGCTCCCTGTTGAAGATATCAACCCTGGTGAACT CAATCAGCCAATTGAGGTTCCGCAGGTTCGGATTCCTAGCTTTCATTCTCACACATTGCTGTTTTTTTCATTGAATTTTG ATTCATGGGTTTGCTTTGGTTTCTGGGTTTTTCTCTGATTTCTAGAATTCGCACAATTGATTGATTTTCTTGTGTATTAA GGATTAGGAAACCTTGTTCAACGGTTTTTGGGTGCTGTCTGAATCTTGTACATGAAATTCTAGTCTGTGAGTGGCCCAAT GTTGTTTGTATTTGCCAATGTGGAGATGGTACATTTCGATTTTATCCAATGGCAACATGGGTTTAGGTAGCATTTTAACA AAATTAAGTTTATGGTACTGATTTGATTTTTATGCATAAAATTCTTTGACATTGAGGCCTAGATAAAGCAATGTGTGACC TGTATTAAGTTTTGCTGAAATTTAATTTGATGATTATGGTCTGGATTTGGGTGGTGTAATTGAATTGCGCTATATTATAA TTTGTAAAAGATCTTGAGGCTTGGTGTTGTTATGTTAGTATTTGGTTAGAGAATGTTCAATTGGATGTTTGTAACAAGAT GGTAACTTGAAGTCTGAAGTGAATGGGCATAGTTTATGCTTCATTGTACATTTGACTTGCATGTGATTTCTTGTATTTCA AATCATTGATTTTGAGACTTTGTTGGGTCTTGGGTTGCTCTGTTCAAATAAACTGGTTCTCTCAATGGATTTTGCATATC ACACTGCTGACTACTCAGTACTCACTGCACAGTACTGTTTAAATCACTGGTTTTATAGTTATTATGCATAAAGGATGGTT CTCTATATCCATGCTGGTACCATGAAAATGGAAGAGGCAAAAGGCGGGAAATCTAATATCCGCTATACAATCCAGATTAT ATGAATATTTTCACATAGTTCTAATGTTACACCTCTTTTTCCCCCCTGCTTGAATAAATAGTAAGGGGAAGAAAGGTTCT TTTAATATATCTTTTTTTTTTTTGTGTGAAGATGTCTTATCCTCTTTCTCTGTTAACCTATTCAATAATATTTCTTTCTC TATAAAGTAGAATGGGAAGGCATGGGATTATAAAGACCACATTTTTATATAGGCTGATGAGCTTTTCTATGTAACTTATA ATATAGTAAATAACAAGCTTTTAAAATACAAAGCAAAGCAGTTTGCACTCATGTCCCCCTCAAATTGGATTCAACCAAAA GTAGAACTTGTGGGGGACTGAGAGGTAATGGTTCCCCTTACATTCCCCTCCCTTTTATAAAATTATATACTTCCAAACAG AGGTAATTAACTAATTATTCCTTTTAAATCCCTTCACCTTCAATCCCCCTAATTATGCCTCTTCCAAACGCTCTAATAGT TTATAGATTATAACCTATCAGAATTATAGTATGTCTTTCCATTCTGACAAGAATAGTTCAAAATAAATTGTTCTTGAGTT GCACAATGAAGAACTATAGCAAGAAAACAGTAAGCCTCATCCCCCTAGGTGGGTTCAATCTCAAGCCCAGAATACAAGGT TGTCTTCAATAGTGGCAGCCAACACTCAACTATACCAGATCTTTTATGACATTGTGATTTGTGAGAGAAAGCAAAATCAC ATTCTCGAAAGTTGTGCTTGTGGGTCTTTTGGGTGATTGTTTATATAAGTTGGTACACAGCTAATTGCTTATGGTTTTTA ATACTTTACAGTTGGCTGTTCACAAGTGCATGGAATGTGGGCAGCCATTACCCGAAAGCTATGCACCTCCTGCTGATGAA CCTTGGATGACTGGGATCTTTGGATGTGCTGAAGATAGGGAAAACTGTAAGTTATCAAATTATACTAAAGTCGGGATGTT ATCTGTTACCTATATTGGACTAGTCAATTAAGTTTAGGGTTAAAAGTAATTTAACTTCATATGTTTTCTTTGAGCAATAA TCTTTAGTCCTTACCTTAAAAAATCTTCATATTTTATATGTTGAATTATGATTGGACCATGCAGTACACTGGAACACAGG ATCTATTTGTATGGCTTTATAAGCAGTATTTACTGTTGCAAACTTGCATTGGCTAAGCAGAAAATTGCTTGCTTTTTATA CCATTCCACCTTAATTGCAGGCTTGACAGGATTATTTTGTCCTTGTGTATTATTTGGGCGTAATGTGGAAAGCTTGAATG AAGATACTCCTTGGACTGGGCCATGTGTCTGTCATGCCATTTTTATTGAGGGTGGAATTGCTCTGGCAACTGCAACTGCA ATCTTTCATGGTCTCATTGACCCTGGGACGTCATTTCTCATTTTTGAGGGTTTATTTTTTACTTGGTGGATGTGTGGCAT TTACACTGGTCAGGTTCGGCAATCTTTACAGAAGAAATATCACTTAAAGGTATGTTTTGAATTTCTTTCGACTTGGACTG GTAGTCACTTTGAAGAATCAATTTGTTTTTAAAATATTCCTGCGCAGATAAGTTGCTTCTGATTATTGCAGATGAGTAAT GTAACATCTATTAGATGTTAAAAAACAACATCCCTTTTGTAGGAGTCAATTCTATTATCAAGCCTTGCCTCTATTTTCTT AAGTGAACAAAATTATGATGACATGACATTTTTTACTGGAAAAAACGATTATGATCTGCTTAATTAGAAAACAAACAAAG ATGCACCTGCTGGCCTGTAATTTAACCATGAAATCCTTATCAATTCCCTGTATGGACATGATTCTTGATTTCTAGTAAAG TTCCAAACAAGTTTGTAAGAAGAGGGCCATTCTTTGGTAGAGGTTATTTCCCTTAAAAGGATTAGGGATTTGGGTTCTAA GTTCTAACGCTAACATGGGTCATGGGGGGGAGAATCCTACATAATTCAAGGTTACCACGAGGCCATAATTAATAGCTACT TTAAGAGCATTTGTTTTAGTGCATGTTTGGAAATCCTTCTATAATTGATTCTGACATCTGAAGTCAAAATCAATTACGGG CAGAAACTTCTATCTATGAGTAACTTCTGAGTGTTAAAATTGATTATGAGGAAAGAAAAACTGATTCAAAGTTCAAACAT GCGTTTACTTGTGTTTCCTTGCACATCTAGTTGCACAAGATTTTGATAATTATTTCCTTTAGCCTTTTTCATTTCCCTGG ACATAAATCTTATCTTGCTTGAAGATTGCCTCATTCTTTTGATGTCTCCAGAACTCGCCTTGCGATCCATGTTGTGTACA CTGCTGCATGCACTGGTGTGCCTTGTGTCAAGAGCACAGGGAGATGAAGGGACGTCTCTCTGAAAGTGTTGTCTCAGAAA TGACCCTTGTAAATGCTCCTCCTGTTCAAGAGATGAAGTCTACTGATGACAAGGAAAGTCCTGAAGCCTCTTCTACTAAC AACAATCACCATACTGATATGGAAATGCAAGCTCTATAG
CDS sequence (LotjaGi3g1v0099100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAAGGACTCAATCGCGCTACGTCAAACTCACCAAAGATCAGCTCCCTGTTGAAGATATCAACCCTGGTGAACT CAATCAGCCAATTGAGGTTCCGCAGTTGGCTGTTCACAAGTGCATGGAATGTGGGCAGCCATTACCCGAAAGCTATGCAC CTCCTGCTGATGAACCTTGGATGACTGGGATCTTTGGATGTGCTGAAGATAGGGAAAACTGCTTGACAGGATTATTTTGT CCTTGTGTATTATTTGGGCGTAATGTGGAAAGCTTGAATGAAGATACTCCTTGGACTGGGCCATGTGTCTGTCATGCCAT TTTTATTGAGGGTGGAATTGCTCTGGCAACTGCAACTGCAATCTTTCATGGTCTCATTGACCCTGGGACGTCATTTCTCA TTTTTGAGGGTTTATTTTTTACTTGGTGGATGTGTGGCATTTACACTGGTCAGGTTCGGCAATCTTTACAGAAGAAATAT CACTTAAAGAACTCGCCTTGCGATCCATGTTGTGTACACTGCTGCATGCACTGGTGTGCCTTGTGTCAAGAGCACAGGGA GATGAAGGGACGTCTCTCTGAAAGTGTTGTCTCAGAAATGACCCTTGTAAATGCTCCTCCTGTTCAAGAGATGAAGTCTA CTGATGACAAGGAAAGTCCTGAAGCCTCTTCTACTAACAACAATCACCATACTGATATGGAAATGCAAGCTCTATAG
Protein sequence (LotjaGi3g1v0099100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEERTQSRYVKLTKDQLPVEDINPGELNQPIEVPQLAVHKCMECGQPLPESYAPPADEPWMTGIFGCAEDRENCLTGLFC PCVLFGRNVESLNEDTPWTGPCVCHAIFIEGGIALATATAIFHGLIDPGTSFLIFEGLFFTWWMCGIYTGQVRQSLQKKY HLKNSPCDPCCVHCCMHWCALCQEHREMKGRLSESVVSEMTLVNAPPVQEMKSTDDKESPEASSTNNNHHTDMEMQAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 222 | 222 | 1.0E-121 | – | |
| PANTHER | 1 | 222 | 222 | 1.0E-121 | ||
| Phobius | 1 | 106 | 106 | - | – | |
| TIGRFAM | 59 | 189 | 131 | 2.3E-32 | ||
| Pfam | 60 | 187 | 128 | 6.3E-24 | ||
| TMHMM | 104 | 126 | 23 | - | – | |
| Phobius | 107 | 126 | 20 | - | – | |
| Phobius | 127 | 131 | 5 | - | – | |
| TMHMM | 130 | 152 | 23 | - | – | |
| Phobius | 132 | 150 | 19 | - | – | |
| Phobius | 151 | 238 | 88 | - | – | |
| MobiDBLite | 207 | 238 | 32 | - | – | |
| MobiDBLite | 224 | 238 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0099100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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