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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0099600 |
| Transcript ID | LotjaGi3g1v0099600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT5G61520.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6; TrEMBL-Plants: tr|G7IVL0|G7IVL0_MEDTR Sugar porter (SP) family MFS transporter; Found in the gene: LotjaGi3g1v0099600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12372544..12375520) extracted from Lotus japonicus Gifu genome v1.2.
CTAGAATATTTGAGTTGACTTAAGACATCATAATCATATACTGGTATATATGTTCATATATACATATTATATATACGATT ATATATATTTATGGTCAGGGAAGGAGAAAAGCCGATTGAAGTTTTTAGGGACAGAGTTGAAGCATGGCAGTGGGGCTGGC AATTGCAAGCAATGGAAGAGGATACAGTGGGAAGATGACTTCTACTGTCATTCTATCTTGTATGGTTGCTGCTACTGGAG GCATAATCTTCGGTTATGATATTGGCATTTCAGGTTTCTTTCTATCACTCAATGAGATTCATTCATTACTATCTAAGAAT GTTTCCAAAATGGTAAGAGTCTGGTGTTGTTCTTTCATTATTTACCTTCCATAAGTTGAAGGATGAAGTTATAGTTTGTT CTTTTGAGGCTTGGATGAGTATAAGCGCTTATTCTAAACTTACATATGAGCAGCTTATGAACAAACTTAGAAAGACTTAT AGATAAGTTAATTAGAAACTACTTTCAAAAGTTTATCCAAACACTTGTCTATGTGCGTATGTTATAAAATAAGTTCAAAT AAGTTCCGCTAATTTCACGAGAATGGCAGGTGGGGTAACATCGATGGGGCCATTCTTGGACAAGTTTTTCCCAGATGTAT ACACCAAGATGAAGCAAGACACCAACGTTAGCAACTACTGCAAGTTTGATAGCCAGCTCCTAACAACATTCACTTCATCA CTCTACATAGCTGGCCTGGTGACATCCTTCTTTGCCTCATCAGTCACAAGAGCCTTTGGGCGCAAACCATCAATGCTTGC AGGTGGTGTTGCATTCCTCATTGGAGCAGCTCTTGGTGGCGCAGCTCTCAATATATACATGCTAATACTTGGTCGAATTC TACTTGGAGTTGGAATTGGCTTTTCTAATCAGGTTGGCTTATCCATTATCCATACAATGCCCTTCTATATTTATTTGATC AGCTATGACACACAAACAGGACAAACCTCACCGGCAAATCTTGGCATGGTTGATAGATAGTTAAGTTCCTTAAACATCCT GACAAGGGTTCGAACCTTAGCTGTGTGTATGAGAAAAGATTAGTGGAGCGAAGCAAAGCTCATTCCGCCAATCTCTACCT CTCGAAAGGGTTTGGCTGCCGGTTGTGGGACACCATTGGTGCACACACAAAAATACAGACACTCAACTTAGACCTCAGTT TTCTCTCAATCTATCTCTTCCTATCACATCATATATCACACTCATTACTTCTATCTTTTTTCTTCATTTCTCACTGTGGT GTCTGCTCAACATTTTCCTTATTTGATTATTGGATATTGTTAACACAATAACTTTATCATAATCCTTATATGGAAGCAAA ACTTCACTGTTTTGCAGTCAGTCCCATTATATCTCTCTGAAATGGCACCCACAAGATACAGAGGAGCAATCAACAATGGA TTCCAATTTTGTGTTGGCATAGGTGCTCTATCAGCTAACCTGATTAACTATGGCACAGAAAAGATCAAAGATGGTTGGGG CTGGAGAATTTCTTTGGGCATGGCAGCAGTTCCAGCCTCAATGCTCACTCTGGGAGCATTTTTCCTCCCAGAAACACCCA ACAGCATAATCCAGAACAGCAAAGACCATCACAAGGCTAAGCTAATGTTGCAACGCATTAGAGGCACCCATGATGTCCAA CCAGAACTTGATGACCTAATTGAAGCAAGCAACATATCAAGTTCTATCAAACACCCATTTAAGAACATCTTAAAGAGAAA GTATAGGCCTCAACTTGTCATGGCAATAGCTATACCAATTTTTCAACAATTCACTGGAATTAATGTCATTGCCTTCTATG CTCCAATCCTCTTTCTAACCATCGGATTGGGCGAAAGCGCTTCGCTTCTTTCTGCAGTTATGACTGGGGTTGTAGGTACT GCTTCAACATTCATATCAATGCTCATAGTTGATAAACTAGGCAGACGAGCTCTGTTCATATCTGGGGGCATTCAGATGCT CTTCTCACAAATTATAATAGGAAGTATTATGGCAGCTCAACTTGGTGACCATGGTGAAATAAGCAAGCAATATGCATATT TGATTCTGGTTTTAATATGCATATATGTTGCTGGATTTGGCTGGTCATGGGGGCCACTAGGATGGTTGGTTCCTAGTGAA ATTTTCCCACTCGAAATTCGATCAGCAGGACAAAGTATTACAGTTGCAGTGAACTTTTTATTTACTTTCATTGTTGCCCA AACTTTTCTTAGTATGCTTTGTCATTTCAAGTATGGCACTTTCTTCTTTTTTGGGGGTTGGGTGGCTGTGATGACAGCAT TTGTTTACTTGCTGTTACCCGAGACCAAAAATGTGCCAATTGAGCAAATGGATAAGGTGTGGAAAGAACATTATTTTTGG AAGAGATTTGTGGAAGACGAAAGCAAAGGCAGAAAGATAGGGGTACCTTGATGTATATCATTCCACAAGTTATATTTATC TGGTACTTACTGTCAGAAATATAATATAAAATTATTTGTAGATCTTCATCCTAAAACTTGGACTTTTAGGATAGTTGATT CATGACATCATATTAAAGCCTCTATATCAAATAAAATAGAGTTCCATCATTGCTTCCCCTACTGTTCTTAGAATATTTTC CACGAAGAGCCAATTGGACATCCGATAATGAAACTTGCACCATGGCAGTTTAACAGATTAAGGCCAATGGACTCTTAAGT GGGAGTGTTAAAATATATATAAAATCAATCACGAAACTTTCCCCGAAGCCGAATATATAAATACACATGGGTATGAATCC TCTCCAGTGACATGACCACTAGAGAGAGATCTCATCCATCTAAAATATTTTTTCCCTAACATTTTGGATGGTAGGGATAT CTCTCCGATGGTCATGTCATGGAAAGAATTCAAACCCATATCTAAAACAGCCTACTAGTTATGTACTTTAAATCAAAGCA CTATAAGTGAAGTTCAG
CDS sequence (LotjaGi3g1v0099600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGTGGGGCTGGCAATTGCAAGCAATGGAAGAGGATACAGTGGGAAGATGACTTCTACTGTCATTCTATCTTGTAT GGTTGCTGCTACTGGAGGCATAATCTTCGGTTATGATATTGGCATTTCAGGTGGGGTAACATCGATGGGGCCATTCTTGG ACAAGTTTTTCCCAGATGTATACACCAAGATGAAGCAAGACACCAACGTTAGCAACTACTGCAAGTTTGATAGCCAGCTC CTAACAACATTCACTTCATCACTCTACATAGCTGGCCTGGTGACATCCTTCTTTGCCTCATCAGTCACAAGAGCCTTTGG GCGCAAACCATCAATGCTTGCAGGTGGTGTTGCATTCCTCATTGGAGCAGCTCTTGGTGGCGCAGCTCTCAATATATACA TGCTAATACTTGGTCGAATTCTACTTGGAGTTGGAATTGGCTTTTCTAATCAGTCAGTCCCATTATATCTCTCTGAAATG GCACCCACAAGATACAGAGGAGCAATCAACAATGGATTCCAATTTTGTGTTGGCATAGGTGCTCTATCAGCTAACCTGAT TAACTATGGCACAGAAAAGATCAAAGATGGTTGGGGCTGGAGAATTTCTTTGGGCATGGCAGCAGTTCCAGCCTCAATGC TCACTCTGGGAGCATTTTTCCTCCCAGAAACACCCAACAGCATAATCCAGAACAGCAAAGACCATCACAAGGCTAAGCTA ATGTTGCAACGCATTAGAGGCACCCATGATGTCCAACCAGAACTTGATGACCTAATTGAAGCAAGCAACATATCAAGTTC TATCAAACACCCATTTAAGAACATCTTAAAGAGAAAGTATAGGCCTCAACTTGTCATGGCAATAGCTATACCAATTTTTC AACAATTCACTGGAATTAATGTCATTGCCTTCTATGCTCCAATCCTCTTTCTAACCATCGGATTGGGCGAAAGCGCTTCG CTTCTTTCTGCAGTTATGACTGGGGTTGTAGGTACTGCTTCAACATTCATATCAATGCTCATAGTTGATAAACTAGGCAG ACGAGCTCTGTTCATATCTGGGGGCATTCAGATGCTCTTCTCACAAATTATAATAGGAAGTATTATGGCAGCTCAACTTG GTGACCATGGTGAAATAAGCAAGCAATATGCATATTTGATTCTGGTTTTAATATGCATATATGTTGCTGGATTTGGCTGG TCATGGGGGCCACTAGGATGGTTGGTTCCTAGTGAAATTTTCCCACTCGAAATTCGATCAGCAGGACAAAGTATTACAGT TGCAGTGAACTTTTTATTTACTTTCATTGTTGCCCAAACTTTTCTTAGTATGCTTTGTCATTTCAAGTATGGCACTTTCT TCTTTTTTGGGGGTTGGGTGGCTGTGATGACAGCATTTGTTTACTTGCTGTTACCCGAGACCAAAAATGTGCCAATTGAG CAAATGGATAAGGTGTGGAAAGAACATTATTTTTGGAAGAGATTTGTGGAAGACGAAAGCAAAGGCAGAAAGATAGGGGT ACCTTGA
Protein sequence (LotjaGi3g1v0099600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVGLAIASNGRGYSGKMTSTVILSCMVAATGGIIFGYDIGISGGVTSMGPFLDKFFPDVYTKMKQDTNVSNYCKFDSQL LTTFTSSLYIAGLVTSFFASSVTRAFGRKPSMLAGGVAFLIGAALGGAALNIYMLILGRILLGVGIGFSNQSVPLYLSEM APTRYRGAINNGFQFCVGIGALSANLINYGTEKIKDGWGWRISLGMAAVPASMLTLGAFFLPETPNSIIQNSKDHHKAKL MLQRIRGTHDVQPELDDLIEASNISSSIKHPFKNILKRKYRPQLVMAIAIPIFQQFTGINVIAFYAPILFLTIGLGESAS LLSAVMTGVVGTASTFISMLIVDKLGRRALFISGGIQMLFSQIIIGSIMAAQLGDHGEISKQYAYLILVLICIYVAGFGW SWGPLGWLVPSEIFPLEIRSAGQSITVAVNFLFTFIVAQTFLSMLCHFKYGTFFFFGGWVAVMTAFVYLLLPETKNVPIE QMDKVWKEHYFWKRFVEDESKGRKIGVP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 8 | 499 | 492 | 3.9E-290 | – | |
| PANTHER | 8 | 499 | 492 | 3.9E-290 | – | |
| Gene3D | 14 | 490 | 477 | 2.8E-123 | – | |
| TIGRFAM | 15 | 481 | 467 | 8.7E-111 | ||
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 21 | 42 | 22 | - | – | |
| ProSiteProfiles | 25 | 475 | 451 | 47.321 | ||
| Pfam | 26 | 486 | 461 | 1.5E-117 | ||
| CDD | 28 | 473 | 446 | 0.0 | – | |
| SUPERFAMILY | 31 | 484 | 454 | 1.28E-57 | ||
| PRINTS | 33 | 43 | 11 | 3.1E-31 | ||
| Phobius | 43 | 79 | 37 | - | – | |
| TMHMM | 80 | 102 | 23 | - | – | |
| Phobius | 80 | 99 | 20 | - | – | |
| Phobius | 100 | 110 | 11 | - | – | |
| Phobius | 111 | 130 | 20 | - | – | |
| TMHMM | 115 | 137 | 23 | - | – | |
| Phobius | 131 | 135 | 5 | - | – | |
| PRINTS | 136 | 155 | 20 | 3.1E-31 | ||
| Phobius | 136 | 157 | 22 | - | – | |
| ProSitePatterns | 141 | 166 | 26 | - | ||
| Phobius | 158 | 168 | 11 | - | – | |
| Phobius | 169 | 187 | 19 | - | – | |
| Phobius | 188 | 198 | 11 | - | – | |
| Phobius | 199 | 221 | 23 | - | – | |
| TMHMM | 199 | 221 | 23 | - | – | |
| Phobius | 222 | 283 | 62 | - | – | |
| TMHMM | 283 | 305 | 23 | - | – | |
| Phobius | 284 | 313 | 30 | - | – | |
| PRINTS | 294 | 304 | 11 | 3.1E-31 | ||
| Phobius | 314 | 318 | 5 | - | – | |
| Phobius | 319 | 342 | 24 | - | – | |
| TMHMM | 320 | 342 | 23 | - | – | |
| ProSitePatterns | 338 | 355 | 18 | - | ||
| Phobius | 343 | 348 | 6 | - | – | |
| TMHMM | 349 | 371 | 23 | - | – | |
| Phobius | 349 | 371 | 23 | - | – | |
| Phobius | 372 | 382 | 11 | - | – | |
| Phobius | 383 | 403 | 21 | - | – | |
| TMHMM | 386 | 408 | 23 | - | – | |
| PRINTS | 388 | 409 | 22 | 3.1E-31 | ||
| Phobius | 404 | 423 | 20 | - | – | |
| PRINTS | 411 | 423 | 13 | 3.1E-31 | ||
| TMHMM | 420 | 442 | 23 | - | – | |
| Phobius | 424 | 444 | 21 | - | – | |
| Phobius | 445 | 449 | 5 | - | – | |
| Phobius | 450 | 471 | 22 | - | – | |
| TMHMM | 452 | 471 | 20 | - | – | |
| Phobius | 472 | 508 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0099600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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