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LotjaGi3g1v0103100.3

Overview

Field Value
Gene ID LotjaGi3g1v0103100
Transcript ID LotjaGi3g1v0103100.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Monoterpene synthase; TAIR: AT3G25820.1 terpene synthase-like sequence-1,8-cineole; Swiss-Prot: sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic; TrEMBL-Plants: tr|A0A072V8U9|A0A072V8U9_MEDTR Monoterpene synthase; Found in the gene: LotjaGi3g1v0103100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:12763880..12767013) extracted from Lotus japonicus Gifu genome v1.2.

CAAGAAAATTTCCCTAAGATATATAGATTGTTTTTCTAATGGCTCTGCAGCTTCAAATTGCATCACGCCCCTTTAACTGT ACTAAAATGCATTTTCCTCAAGAAGGAAAGTCTTCATCTCTTACAATGAGGAGCCCCAAGCTCGAGGTCTCTTGTGCAAC TCGACACAAGGCATCATATAAAGTTAATAATAATACTCAAACAATTCCTCGTCAATCTGCAGTTTTTCAACCTACAATTT GGACTTATGATTATATCCAATCATTAAGTACTGAAAATAAGGTATGTTTCTTCTTCTTTTATTTTGTTTAGTTTCTTGTA TGTGAATTTCTGATACCCTTGATGCTATTATAAGTGCTTCTCTACGATATGTTCGGGCTAATATCTTCTTGTTAAATTAA TGCCGGAAGAAATTTACACAGATAAAGTAAGAGTGATAAGGGAAGAAGTAAGGACGATGCTTTGCAAAGTGGAAAGTGAG CTTGATCAACTTGAGTTTATTGATGTATTGCAAAGATTTGGAGTGGATTATCATTATGAGAATGAAATAAGAAAGTTCTT GGATGATATTTACAAAATGGACACCTTGAACGAAGAAAATGATTTATATGCTACAGCACTTAAGTTCAGACTCTTAAGGC AGCATGGTTATATTATATCTTCAGGTTTTTAACTTTTTATAGTCATTCTAAGATTGAACTTAAAATATATACTCCATCCG TTCTAAAATTATTTTAGCCGTTCTCTATTTTTCGGGCTATAGCCCATACTAGTCTGCGGTATTGCGGGCCGGCCCGTGGA CTTCAACCTGCTTACCCAGCTCTAATCACAATTCTCATTAATTAGTTGACAAATGATGTTCATTCTCTCTCTTTCATATA CCTCATATTAAATAAGGGTGTTTTAGACAAATTATAACATCAATTAATGAACTTTCAATAGTTTTGGAACAGAGGGAGTA TATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAATTGTGTGTTTATGAGT GTGTTTGTTGTTATAGATGTATTTATTCACTTTAAAGATGATCAAGGTGGCTTCAAGAAAAGCCGTACTCTTGATGTGGA GGGACTGTTATCATTATATGAAGCCTCATTTCATTCATTCGAAGATGAAACTATATTAGATGAAGCAAAAGATTTTACCT CAAAATTTTTGAAAGAATATTTGAACGAGAGGAAAGGCAACAACTACACATCCCTTTTAATCAATCATGCCTTGGAGCTA CCATTACATTGGAGGAATCCTAGATGGGAGGCTCAATGGTTCATTAATGTATATGAAATGAAGCAAAACATGATTCCAAC TTTACTTCAGTTAGCTAAACTTAGTTTCAATATTGGCCAAGCCATCTATATAGAAGAGCTCAAGGAATCATCCAGGTGAG AATCAATTATTTTGTTCATGAGACATTTTACTTAATATTTTCTTGATTAAAACCCACCTCGAGACATAATTGTTGAATGT TTTACAGTTACCATATCATATTTCTTTCTCACACATTAATTATATTATTCTCCAAAATAAAACTTACAAAATACAAACTA AATAGTAAATACAAGATTGAAACATTTAAAGAATTGTTAAATTAAACAGCTCCTCTTGTGTGAAATAAACCTCGAAAATA TGTGAAATTAAATCTTTTAATTTATCTCAATAGATACTCCATTTATTCATTGATCATTTACATTTCTCGATCACTTGTAC TTATATATACCTCATAGTTTTTTTCCTTTCTCAAGATGGTGGAATAAAGTGGGCCTTGGAGAAAAGTTGAGTTTTGCTAG AGATCGGTTGGTTGAGGGCTATGTTTGGACCGTAGGAGCGAACTCTAGGCCAGATCTCGAATACTTCAGAAAGAATATGA CAAAGGTCAATAACCTAATTGTCATAATTGATGATGTTTATGATGTGTATGGTACATTGGAGGAATTGGAGCTTTTCACA GAAGTAATCGAAAGGTTAATTAGTCTGCTTAATAATGATTTTCTTTACTCATTTTATTTGAAAAAAAAAATTCCAAAAAA AATATTTTAAATATTTTTCTTGTGATTCTAGGTGGGATGATCCAAATGCCGTGGATAGTCTCCCAGACTACATGAAAACA TGCTTTCATGCAATCTATAACTTTGTCAATGAAATTGCTTTGGAAAATCAAAAGAAGAATGGGTACGATATCACCTCATA CCTAATGAAAACGGTAAGAAATTATTTGTTTTGTTATTCAATCCTCTTAGTTATCTCTTTTCGGTATAAATTTATACACA TAAAATTATTGTGCTCAATTAATCAAGAGTATTTTCAACTTGTTGTATCAGTGGGTAGATCTATGTAAATCATATTTCAT TGAAGCAAAGTGGTACCATGGTGGATATATTCCAAGCATCGAAGAATACTTCGAGAATGCTTGGATTTCCATAAGTATGC CTGTTTTACTAACGCATGCTTACATCTTGGTTCCACATTCAATAAAAAAGGAAGAGTTGGATCATTTGGAAAAATACCCA GAAATAATTCGATTTCCAGGAATGATATTACGCCTTGCTAATGACATTGGATCATATAAGGTATGCTACAAATCTCATTC TTTCTCATTGCAAAACTCTTTGGTTTCTTTGGTTTCTTCTCACTGCTTTTTTCCCACTTTCATTTTTAGGGTGAAATTGT GAAGGGTGATTCTCCCAAGTCAATTGAATGCTACATGAATGAAAGTGGAGCTTCTGAAGCAGAGGCTCTTGAGTATTTAA ACTCTGTGATGTATAAAACATGGAAGAAGATGAATGAAGTGACTCATAATTCTTCTTTCTCTAGGTGTTTCATAAGTACA ACTGTAAACCTTACAAATATGGCATTGTGCATGTACCATCGTGGAGAAGGATATACTACTCAAGATCCTGAATTTACGAG TCTCATCCAATCATTAATTATTCAACCCATCCCTATTACACAGACAAACAGTTAATGCTCAAATTAGTTTATGCATTGTT TTTTGTTGTTGTGTAATAATTTATGCATTGTTTTAAGTACAATATGTAATGTGAGTTTTATTTTTATGAATAAATGCATT AACTTGGTTGTCAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0103100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCTGTTTTACTAACGCATGCTTACATCTTGGTTCCACATTCAATAAAAAAGGAAGAGTTGGATCATTTGGAAAAATA CCCAGAAATAATTCGATTTCCAGGAATGATATTACGCCTTGCTAATGACATTGGATCATATAAGGGTGAAATTGTGAAGG GTGATTCTCCCAAGTCAATTGAATGCTACATGAATGAAAGTGGAGCTTCTGAAGCAGAGGCTCTTGAGTATTTAAACTCT GTGATGTATAAAACATGGAAGAAGATGAATGAAGTGACTCATAATTCTTCTTTCTCTAGGTGTTTCATAAGTACAACTGT AAACCTTACAAATATGGCATTGTGCATGTACCATCGTGGAGAAGGATATACTACTCAAGATCCTGAATTTACGAGTCTCA TCCAATCATTAATTATTCAACCCATCCCTATTACACAGACAAACAGTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0103100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPVLLTHAYILVPHSIKKEELDHLEKYPEIIRFPGMILRLANDIGSYKGEIVKGDSPKSIECYMNESGASEAEALEYLNS VMYKTWKKMNEVTHNSSFSRCFISTTVNLTNMALCMYHRGEGYTTQDPEFTSLIQSLIIQPIPITQTNS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam
PF03936
1 88 88 1.5E-20
IPR005630
SUPERFAMILY
SSF48576
1 142 142 5.76E-31
IPR008949
Gene3D
G3DSA:1.10.600.10
1 145 145 5.4E-42
IPR008949
PANTHER
PTHR31225:SF74
2 145 144 1.4E-37 –
PANTHER
PTHR31225
2 145 144 1.4E-37 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0010333
Molecular function Terpene synthase activity Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
Subterm of
GO:0016829
Molecular function Lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0103100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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