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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0104200 |
| Transcript ID | LotjaGi3g1v0104200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transcription factor Y subunit C8; TAIR: AT3G12480.1 nuclear factor Y, subunit C11; Swiss-Prot: sp|Q2YDP3|NC2A_BOVIN Dr1-associated corepressor; TrEMBL-Plants: tr|I3SVE1|I3SVE1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0104200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:12897913..12902086) extracted from Lotus japonicus Gifu genome v1.2.
AGTCAACCCGACAAGCCTTATCATAGCTATTTATTTATAATTCATTTAATTCTTTCATATAATCATTTTTGTCCTGGCCA GGTGTTACACAACTATTGGTCTGTCCCACAGTTTCCCTTACAGCTGCGTAGGGTTATAGTTTTGTAATGTTTCATTCATT GTCTTCGTCAAAGTCGTACGGACGGATATTCAGCTGAATGGACACACACACCTCGTTTGTTTGATGATTTCTGGAACCAA CAGCATCTTCGGATCTCAGATCAGATTTCGCTTCCTTTGAATTTCTCCTCTCAATTCTTGTTTTTCATTCTTCTCAAACT TCCTTCCCATTTTCCTTTCTTACCTCAATTTCATGCCATGAGGAAAAAGCTTGATACTCGTTTCCCTGCGGTAAGTTCAT TTCTGCTTTTCAAAATTCTAGGGTTGGGGGTGGAATTGCCTAGAATCACATGATGAGTTTCACTGTAATTTATTTTGTGT AGTTTCTGGGATTATTTGTTTGATTTTGATAATTGAAGTAGAAAGGGTTATAGTGGCGTTGGTATTTTTCCATTTTGGAC TTGTTTGATGTTAGATTTTTGTGCTTAGCTAGTTTTAGGTTCTGATTAGTATCAAAATTAGTGATGAATGCAGTAGTTGA GACCAGTGTTGTCAAATAGTGGTTTCAGCCGCGCTATAGCGTAGCCCTTTTTTTGGCTTACCGCTATTTTCCTCTTTAAG AGGCTGGAAATAGTGGATTTTTGGCTTGCCGTATAGTCCGCGATTAACAACACAGAGTGCTGTGGAGCTATATGACGGCT TTATTTCATGTTTTCGGGTTTGGATGATTGTGATTATCATACTTTTTCTTTATTTATTTATATGGCGTTGAACCAAACTC TACGGCTATCTCCCATATTAATTATCCTTATGATCTGAAAATTTGCTGGGAGCAATTCACTATTTTTTGAACTCAATGAT TTTCTGTGATGGCTAGAGATATAGTTGTTCCTTTGTTGTTTTTGCTGCAGCAAAGTTCTTGAATATGCTTGTAAACATGC ACAGGAACTTGCTTTTTTACTATCGGTCTATTGGTTAAGGATAGTCCTTGGACATGTTTCTTATTTTCCCAATGACTTGA AGTGAAGCTTTTAAATCATATTTTCGCAACTTTACACGAAAATTGTTTTAGATAATATAATACAATCAGAGAATCGGATT GTCTATTAGAAAAACCAATTAATAGGTCCCTGTTTCCATACTTGAACTTTATTTTATAAAACATATCATAGATAAAAATC TGTATGAGGTCATCTTATCTTCAAAATGTAATTTGTGTTATCCCTGTTAAGTACTGCCATAATCTAAACTGAACCTTCTT CTGTTATATAGTCTGTTGAACATTTTTCTGGATATTTTTACCTTCTGTAGTGCTCAAGAAGATTTATCTAAATGGTCATG TCTGTCTTTATCCACTGTCACCTTGCATTTGCATTTGCTTTATACTGTTCTTCTTAGACCCTTTTCAATTTTTCCTCTTT TGTGTTCCATATTTTAACTTTTAAGTTAAGAGATCTTTTAAAACAAAGCCTTATCTGGTGGAAACACTGTTTTGCAGGCT CGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGATTGCACTGGCAGTTCCTGTTTTAGTGTGTGAGTTGCT TATACTTTCTATCTAATCAACTCTTGGCTATTGCTTGGCCTTTTATCTCATGTGTTGTTGATGTAACTCTTGATTTTTTT TACAGCTAAAGCTCTGGAATTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAGAGAGGAGCAAAGA CAATGAATGCATTGCATCTGTAAGTAAAGGGATATTTTTGAGTTGGTATTTTTCTCCTACCTGAAGTATGTCCCTTTATA GACTGCTTTTACTTTGTGCTGAAACTTGATTTAACTATTAAGAATAGAAGTTCCAAAGTTCTAACTCCTCATCCTAACTA TTAAGCTTTTCGGTGTTGTATCTCTTAACTATTATGCTCCCTGTTTGCATTTGCATGTTGAAATGTTTTTTCTTTTCCCA TACTGAAAAATTTCCCAATGCAAAATATGCTCCCTTTTCATGTCCTAGTTAAAGTAGTTATGCCCCATTAGCCAGCATAT TTATCACCCCTGTTGAGGATGTGGTACTTCTACATCACTATTGGAGTTTGTGATTCAGTGGCAATTTCGATCCTTTTGGC TTCTGTTTTGATCTTGAACCATCCTAATATTTTCTTAACTGGCTGAGACAATTAGCTGTTTTGGACCTCTAGAAAATTGC TGCTTAAGAAGCAAATATACTTTTGACACGCAAACACATTGGGGAATGGGATCAACATAGGACCTGTATCCAATTCCTCT TTCCGGCTTCCCCATCTCATTTACATCTTTAATATATAGCTAGTCTGGTTAACCCATAGTAAACCTGAATTGCAGGAAAC ATTGTGTTCAAAGCTATAATGTCTTTGACTTTTTGAGAGACATTGTCAGCACGGTTCCTGATTATGGGCATGGACATGGC CATGGCAACTCTGAGGGTGGAGCTGATGATCGTGCCCTTCCAAAGAGAAGGTTTGAAGTCAAATAGCCTTTATCTTTTTC TTTAATCCATCTAGTTTGGTTATGCTTACAGACAATTAATGCAGTTAAGAATGCTACATTTACCAGGAAAGCTGCTGGGG ATGATGGCAATGACAGTGATGAAGAAGCTAAGAGGAGTAAGATGGTAATTACACTTCTGTGAAAACCTGGATAGTACTCT AACTATATTAGTAAAGTATTGCACACAGCCACACATGCACACATGCTGGCAACAATGCAGGAATTGGTACATTTGCACCA TCAAATACTCCTAGAAAGTGGATTTATTTAATTTTACCAATTACCATTGACTTATATCTAGTTATGATGTTGAAGTTTCA TACTAATGCCATAATTAACTTACAAGTCATATGTGATAAAAAGTGGATATTTTCTTATGTTTTTAAAGTAATGTTTTTCC TTGAAATCCATTCTTTGGAGGGATGAAAAATATGCTGTGTTGAGAAGTCTCACATTTACTAGAGATATAAGTGTTAATAA AGAATTGAACAACCCTCGCCCCTAAGAGCTTTTTGGGTATATTTAGACCTAACCTGAATTCTAAGATATTGTATGTGTAA AATGGCTTAGTATTAAGTCTTCATTGTTTTGGTCAATAACTCTTTTTATCCTATAGCAGCTTGAGTTGGGCCACACTAGC AGTACTGGCAAGGGAAGAGGCCGAGGTAGAGGTAGAGGCCGAGGCCGTGGTCGAGGGGCTCGAACTGTAGAAAAAGAGAC TAGTGTACACCAGGTTGAATCTGAGCCTTGCACCTCTATCCCAGAAAGTAGCAAAGATTTTCCTGATACAAGTGTGGCAA TGTATAATGATCCAGAATCCAAGGAGTTATCAAAGGAAAACATTGCAGTCCCTGAGGAAAATGCTCAATCTCTCCGCAAC ATTGATCTGAATGCCAACTTAAATGAAAATGAGGACAAAGGTGCTAGCACAGCTGCTCAGGCCTCATTGCCTGAACCTGC GGAAACAGAGATTAAACACGAAGAAATTCCCGGCTGGTCCCTTTCTGACGTGGACAAGATGGCCATTGACAATATGCAGC TTGCAAACCTTGGTAGTAGAGTAGAAGATGATGAAGAAGATTATGATGAGGAAGGGTAAGTTCTAGTGTACATTTTGGGG GATTAGCTAAAGATGGTGAAAACAGAAGAATGAGTACATATTAGTATTTTGATGGCTATCCTCTAGTAACCAGAGAATCT GAATTACATATTTCTTCTATATCTGGGATGTCAATGTTCCTGTGTAGCAGATGTAGCTTCCTCTTAACACTAATGTTAGT AGTACTTAGTAGAGCTTTGTGCACTTTTAGGCTCAAAATGGATGTTTTTAGGCGACATCCACCTTGCTAGTACAGGTCAA ACAGTTGTTAGAGCTTGGCTACTAGTTGATTTCATTATGTTGTGTTATTTGAGCATTGCCTGACAAAATGGTTTTCTACT TTTCTGTTTGTCTATCAGAAAGCAGAAGTATATTAATAGATGTAAGCTGCTTTGAAGAATAATGGGAAGAAAGAGATTAT CCAACTATAATGAC
CDS sequence (LotjaGi3g1v0104200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAAAAGCTTGATACTCGTTTCCCTGCGGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTTGGAAAGAT TGCACTGGCAGTTCCTGTTTTAGTGTCTAAAGCTCTGGAATTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAA CTCTTCAGAGAGGAGCAAAGACAATGAATGCATTGCATCTGAAACATTGTGTTCAAAGCTATAATGTCTTTGACTTTTTG AGAGACATTGTCAGCACGGTTCCTGATTATGGGCATGGACATGGCCATGGCAACTCTGAGGGTGGAGCTGATGATCGTGC CCTTCCAAAGAGAAGGAAAGCTGCTGGGGATGATGGCAATGACAGTGATGAAGAAGCTAAGAGGAGTAAGATGCAGCTTG AGTTGGGCCACACTAGCAGTACTGGCAAGGGAAGAGGCCGAGGTAGAGGTAGAGGCCGAGGCCGTGGTCGAGGGGCTCGA ACTGTAGAAAAAGAGACTAGTGTACACCAGGTTGAATCTGAGCCTTGCACCTCTATCCCAGAAAGTAGCAAAGATTTTCC TGATACAAGTGTGGCAATGTATAATGATCCAGAATCCAAGGAGTTATCAAAGGAAAACATTGCAGTCCCTGAGGAAAATG CTCAATCTCTCCGCAACATTGATCTGAATGCCAACTTAAATGAAAATGAGGACAAAGGTGCTAGCACAGCTGCTCAGGCC TCATTGCCTGAACCTGCGGAAACAGAGATTAAACACGAAGAAATTCCCGGCTGGTCCCTTTCTGACGTGGACAAGATGGC CATTGACAATATGCAGCTTGCAAACCTTGGTAGTAGAGTAGAAGATGATGAAGAAGATTATGATGAGGAAGGGTAA
Protein sequence (LotjaGi3g1v0104200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFL RDIVSTVPDYGHGHGHGNSEGGADDRALPKRRKAAGDDGNDSDEEAKRSKMQLELGHTSSTGKGRGRGRGRGRGRGRGAR TVEKETSVHQVESEPCTSIPESSKDFPDTSVAMYNDPESKELSKENIAVPEENAQSLRNIDLNANLNENEDKGASTAAQA SLPEPAETEIKHEEIPGWSLSDVDKMAIDNMQLANLGSRVEDDEEDYDEEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 85 | 85 | 6.4E-30 | ||
| PANTHER | 3 | 290 | 288 | 4.9E-118 | – | |
| PANTHER | 3 | 290 | 288 | 4.9E-118 | – | |
| SUPERFAMILY | 4 | 90 | 87 | 1.82E-20 | ||
| Pfam | 8 | 71 | 64 | 1.6E-19 | ||
| MobiDBLite | 91 | 204 | 114 | - | – | |
| MobiDBLite | 98 | 132 | 35 | - | – | |
| MobiDBLite | 156 | 170 | 15 | - | – | |
| MobiDBLite | 171 | 189 | 19 | - | – | |
| MobiDBLite | 231 | 257 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi3g1v0104200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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