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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0106200 |
| Transcript ID | LotjaGi3g1v0106200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor radialis-like protein; TAIR: AT2G21650.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9SIJ5|RADL2_ARATH Protein RADIALIS-like 2; TrEMBL-Plants: tr|A0A0B2PI96|A0A0B2PI96_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0106200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13154233..13154678) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCATCAAGCTCAATGTCATCCTATGGCTCATGGAATGCTAAGGACAATAAAGCCTTTGAAAGGGCTCTAGCTGTTTA TGACAAGGAAACCCCGGACAGATGGTACAATGTTGCTCAAGCTGTTGGTGGGAAGACCCCAGAGGAAGTGAAGAGGCACT ATGAGCTTCTCCTTAGGGATGTTAGGCACATTGAATCAGGGCATGTTCCATTCCCAAACTACAAGAACACTGGAGGGTCA GAACAGGAGAAAAGGTAGTGCACACTAAAACTGTATCTTCATATTCCCACTTGAACAAATGCAAATTATGCAATCTTCAC TTCTCTGCCTGTGTCTAAGTTGTCTATATAGTTTCGTGTTTGAATCAACTTATTTTTCATCATAATCAATAATGGGTCGC TTCTCACGATGTGCATATTTGGGTACACAGTAGAAAGCTACCGTGA
CDS sequence (LotjaGi3g1v0106200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCAAGCTCAATGTCATCCTATGGCTCATGGAATGCTAAGGACAATAAAGCCTTTGAAAGGGCTCTAGCTGTTTA TGACAAGGAAACCCCGGACAGATGGTACAATGTTGCTCAAGCTGTTGGTGGGAAGACCCCAGAGGAAGTGAAGAGGCACT ATGAGCTTCTCCTTAGGGATGTTAGGCACATTGAATCAGGGCATGTTCCATTCCCAAACTACAAGAATAGAAAGCTACCG TGA
Protein sequence (LotjaGi3g1v0106200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSSMSSYGSWNAKDNKAFERALAVYDKETPDRWYNVAQAVGGKTPEEVKRHYELLLRDVRHIESGHVPFPNYKNRKLP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 77 | 77 | 1.5E-44 | – | |
| PANTHER | 1 | 77 | 77 | 1.5E-44 | – | |
| Gene3D | 3 | 71 | 69 | 5.5E-21 | – | |
| ProSiteProfiles | 7 | 62 | 56 | 9.107 | ||
| SMART | 8 | 60 | 53 | 1.9E-7 | ||
| SUPERFAMILY | 11 | 64 | 54 | 1.94E-12 | ||
| CDD | 12 | 58 | 47 | 5.20011E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0106200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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