Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0106500 |
| Transcript ID | LotjaGi3g1v0106500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proline-rich family protein; TAIR: AT5G07020.1 proline-rich family protein; Swiss-Prot: sp|Q6FPQ3|MPH1_CANGA ATP-dependent DNA helicase MPH1; TrEMBL-Plants: tr|I3SV78|I3SV78_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0106500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13167678..13170886) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAATGTCCACACATGACTTATCCCACCCAACAAGTTCCTTCGAGCTCGACCACGAAACACACATCATCAACACACAA ACACGCACACCTGTGTTCACCTTCACCACCAAACCATAACCAAAATCCTAACTTTTTCAGAACCCTTTTCTTTTGAGATC ATTTTGATTTAGATTTCACTTCTGGGTCACGCTCTCACTCAATTTCTCATCATTCATTACCAATAATGTCTTGTGCATTG CAAGCAACCTTAGCATCCAACACCTGTGCCTTTTCTTCAAGGAGATTGTCCTTGAATAACCAGAAGTTCAGCAAGAGAAG TTCCTACTTGCTCACTGTTAGAGCGAATTCTGATGATGCTGACTGTAATGATGAAGAATGTGCCCCGGATAAGGAAGTGA GTTCATTAGTTTCTATGCTTTGTTCTATTTTTTTTTACCATGCCTGTTTATTAGCTGAAAAAATTGGGGAAAATATGTTA ATTAAGAAATGGGACCATGTAAATATGATAAATGGAAAATTGTGACCTTTTTTCAAGTGAGAGGTAGGGTTATGATCTAT GAATTACTAAACTACTAAAGTTGGTTATGGTTTTTTGTTTATGGGTTATATTATATAACCCATAAACAAATAACTTATAT TGACTGGAGTTGAGTCTAGGAGAAGAAATGATAGGATACCTTATTGTGAAGATAGGAACAATATAGTCTGAAAAGGATTA TTGTCTTAAGATCTATGCTGTGCACATTAACTCAAATTGCAAACTTTGTCAAGTTAGCATTAGATTTTATGATAAGATTT GCTTCAGTTTTGTGATTGGAATTTCCAAGCAGTGGTGTTCTTTCCCCCTTTCCATGTTACTGCAAACAAATATTTGTTCT TAAATTAGATGATTTTTGTTTCTTGTGCTCAATATGAATTCTGTGAATTAATTTAATTAGGATTATGAAAACTGAGGACT ACGTAGAACCTGAAAACTACTTCTTCTTCGGGAATTAGCAGAACTGAAGAAGGTTGTGTATAAAAGATATGTATGGAAAT GATATTAAGGGAAAAATTATAAATGATATCAAGATGACCTCTATAAAATCATGCACAATTAAAAAATGAAAGCTATATTG TCCAATGTAGTTTCCACCACATTCATTCACAGACAAAGCAAGTTAATCCTCTATTGATGGTGATATAGGTAGGGAAGATC AGTGTGGAATGGTTAGCAGGGGAGAAAACTAAAGTAGTAGGTACATTCCCTCCTCGCCGTGCTAAGGGTTGGACAGGCTA TGTTGAGAAGGACACTGCTGGACAGACAAACATATATTCAGTGGAGGTTAGAATGTTTTCTTTTTCTCTTTCAACTCAAT CAAAGGTGTGTATCATTTTATTTTATGCTGTTCTTTTGCCTTTAATTCTTCCTTTCATTTGTTGAAGTTTAATGTTTATT TTGCGGAGAATGTGAACATATAGCAAAGCCAGGTGGTGTATTATGATATTATTATTTAGGCAAAAGTAGCTATCATGTTA GTATGTTGATATTAACTTGGAGTTGGTTGCTGAGGTTGGTAGCTTAAGTTAAGATGAAAAATCCATGCTATCATAACCTT CTTGTCCTGTTTTCCTGAACTAAAACGAATGAGAAATCTCATCTACTTTGATTATTTGATCTCTATTGACAACCCCATAG GTTTTTGGGAATTGTTATTCAGACCCCCCCCACAGCTATTCAGACCCCCTCAACAACCTCCATCTTCTCCTCTCTCTCTC TCTCTCTCTCTTCTTTTCTACTGTTAAGTGTCGTTTTTAGAATTGCTGTTTTTTTCTGCAACCTAACGCACTTTGAAAGT GCGACCCTAACGCACTTTCAAAGTGAGACAACTGAAAGTGAGATAGCACTTTCACCTGTCTCACTTTGAAAGTGAGACAA CACTTTCACCTGTCTCACTTTCAAAGTGAGACACCTGTCTCACTTTCAAAGTGAGAGTGAGACAACTGTCGCACTTTCAA AGTAAGAGAGGGGTCGCACTTTCAAAGTGCGTTCGACAAGGGTATTTTTGGATTTCTGAAAATGTTTTGGGTCTGAATAG TTGTGGGGGGGGTCTGAATAACAATTCCCTAGGTTTTTTTGGGGTGTTAAATGAAGAGCTGAAAGATTTGTATAACTGAT GAGACTGGCACTAATTAATTGACATCTTCATTCTTCAGCATGTATGTGCTAACATTATCAATAGTGTTAGATATTTGTCT TAACACCTTGTGACTTTCCAGCCAGCAGTTTATGTGGCAGAAAGTGTTCTTAGTTCAGGAACTGCTGGTTCTTCTAAAGA GGGAGCTGAGAACACAGCAGGCATTGTCGCATTCCTTGCCCTGATCTCAATTGCGGCAGCATCATCTATACTTCTACAAG TTGGTAAGACTACTCCTCCGATCCAGAGAGCTGAGTACTCCGGGCCATCACTTAGTTACTACATCAGCAAGTTCAAGCCA CCGGAAATTACTCAAGCACCCGCGCCTATTGAGGCAGAACTACCATCATCTGTTGTTCAGCCTGAAACCGCTCCAGAAGT TTCATCATCTGTTGCGGCTGAATCTGAAATTCAGCCAGAAGTACCAGAACCTGTTGTTCAGCCTGAAAGCTCTCCTCCAC AAGTTTCATCATCTGTTGAGGTTGGATCTGAAATTCAGCCGGAGCCCGCAAGCGTGAGTGTTGTATCTTAGGTGGTGATT ATATTATGTGCTACTTTTGCTTTTTAAAAACATAGCAAACAGTTTGTGTCGATAATATGAGTCAATGTATACACCATATC ACAACTAAAGGCTTATGGATGGAAATGTTTTTGCTAAACGCCATTATTGGTGTGCTTTTGCTACCAACCGAACTGTGCGT ATTTTTTGCTGGAGAAGGAGCTGATCTTTGTGAACACACCTTGAATAAAGGTTAACCCCTACATTGCATAGGTTATTTAA TCCTCATATTAGTGACGTGAAATTGTGTCAGTGGTATTCTAGAGGTGGAAATAGAGACTAAAAATTAGAGTAACTTATGC ATACCTTACCAAAAAATTAGAGTAAAAGAAAGTGTTTAGTGGCTGAATTTCTTCTATATTTCTCGTTATTTTCTGCATCT CTCATACACATGTACTCAGTACTTATAGCATAGTGAGTGACTCTTACAATTATCAAAGAACTAACTACACGTCCATTTCT TCAATTACA
CDS sequence (LotjaGi3g1v0106500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTGTGCATTGCAAGCAACCTTAGCATCCAACACCTGTGCCTTTTCTTCAAGGAGATTGTCCTTGAATAACCAGAA GTTCAGCAAGAGAAGTTCCTACTTGCTCACTGTTAGAGCGAATTCTGATGATGCTGACTGTAATGATGAAGAATGTGCCC CGGATAAGGAAGTAGGGAAGATCAGTGTGGAATGGTTAGCAGGGGAGAAAACTAAAGTAGTAGGTACATTCCCTCCTCGC CGTGCTAAGGGTTGGACAGGCTATGTTGAGAAGGACACTGCTGGACAGACAAACATATATTCAGTGGAGCCAGCAGTTTA TGTGGCAGAAAGTGTTCTTAGTTCAGGAACTGCTGGTTCTTCTAAAGAGGGAGCTGAGAACACAGCAGGCATTGTCGCAT TCCTTGCCCTGATCTCAATTGCGGCAGCATCATCTATACTTCTACAAGTTGGTAAGACTACTCCTCCGATCCAGAGAGCT GAGTACTCCGGGCCATCACTTAGTTACTACATCAGCAAGTTCAAGCCACCGGAAATTACTCAAGCACCCGCGCCTATTGA GGCAGAACTACCATCATCTGTTGTTCAGCCTGAAACCGCTCCAGAAGTTTCATCATCTGTTGCGGCTGAATCTGAAATTC AGCCAGAAGTACCAGAACCTGTTGTTCAGCCTGAAAGCTCTCCTCCACAAGTTTCATCATCTGTTGAGGTTGGATCTGAA ATTCAGCCGGAGCCCGCAAGCGTGAGTGTTGTATCTTAG
Protein sequence (LotjaGi3g1v0106500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSCALQATLASNTCAFSSRRLSLNNQKFSKRSSYLLTVRANSDDADCNDEECAPDKEVGKISVEWLAGEKTKVVGTFPPR RAKGWTGYVEKDTAGQTNIYSVEPAVYVAESVLSSGTAGSSKEGAENTAGIVAFLALISIAAASSILLQVGKTTPPIQRA EYSGPSLSYYISKFKPPEITQAPAPIEAELPSSVVQPETAPEVSSSVAAESEIQPEVPEPVVQPESSPPQVSSSVEVGSE IQPEPASVSVVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 218 | 218 | 5.0E-100 | ||
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 10 | 8 | - | – | |
| Phobius | 11 | 15 | 5 | - | – | |
| Phobius | 16 | 128 | 113 | - | – | |
| Phobius | 129 | 150 | 22 | - | – | |
| Phobius | 151 | 252 | 102 | - | – | |
| MobiDBLite | 193 | 252 | 60 | - | – | |
| MobiDBLite | 197 | 211 | 15 | - | – | |
| MobiDBLite | 226 | 252 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Chloroplast thylakoid membrane | The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. | ||
| Biological process | Regulation of protein complex stability | Any process that affects the structure and integrity of a protein complex by altering the likelihood of its assembly or disassembly. |
Expression pattern of LotjaGi3g1v0106500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…