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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0108100 |
| Transcript ID | LotjaGi3g1v0108100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1); TrEMBL-Plants: tr|Q93XA1|Q93XA1_PHAVU TGA-type basic leucine zipper protein TGA2.1; Found in the gene: LotjaGi3g1v0108100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13317395..13326076) extracted from Lotus japonicus Gifu genome v1.2.
ATATTGAACCTATACCATCATCATTCATCATCATCACCCGCATCATCATCAGAATTCCAAGGTGGGTTTACTTCATTTTC TGCTATATGATTAAATTTCACTGCTGAGTGACACCAGTAAAAGATGCAAGCTTTGTGTTCATGGTGAATTTCACTGCAAC TTTAGCTCATTGATTAAATTTTCTTAAAAAAATAATTTTTTTCAGCTAGAATTCGGGGTATATTTGATTTGGGTATCTGG GTGTAATTGTTTTGATGTAGAATTCGTCTTTTGCTTGTCAAAGTTCATTCCTTTGACTTTTTTTAGCACTTTTTTTCTTG TGGGTATACTGGAATTTTCCATTTTTTTGAAAGCAGTGGTGCACTTGAACTGCTAAAGTTGAGGGTTTTCTTTGCAACAG TTTGAGATTTGTTTTCTGTCAGTATCTCTGGAACTCTGGGAATTTCTGAGATTTGAATTGTCTGAATTTTGGTTTTTTCT TTTGTTTGTTGCAAGTTTTAGTATTTGGTTGTTCTGTTCGGCCTCTACAGAAGCAAAGATTGTGTTTTTCATTCTGTGAA TTGTTTTGGCCATGGTTTTTAGGTTTCATGTTTTGCTGGAGCGACAAGGGAATTGAGGATATGATGGTGTATGTGGAGTA GAGCCAGCGTTGATGCCGAGTTCGATTCACAACAATTACCTAGTTCCAATGCATAGTATGTTTTCTTGAATATTTTTGGC AAACATCTTGTTTACTTCAGAGTTCAGAGTTTTAGTTTATGTATCTAGTGCTGCTTACCACATGCCAGAGTTTCTCGCTA TCTTAGACTGAGATTTGAGACACTTTTAGGTCATTTATTTTACCTTGTGGGTGGAACAAGGAATATCTAGAATATGGTGA TTTTCATTGTTGCTTTGCTCTCTTTAGTTGGGAGATTTGAGATACTTGAGGGTTTTCATTTCTTTCAGTTTGGTGGAACG GAACTTGATAATGATAACTTCATATAATCTTTGTTCGGTATTGAATAAAATTGTAGTTGGTGCTGTTGGAATCAAGTGAT CAAGTGTTAGAGTCAAGTCCCACATCGAAGAAGTCAGTGTAAGAGGGAGAGTTTATAAGGAGATGGACCCATAAACCTAT TGCCTTAAGGTTTTGGGTTAAGATGTGGTGTCCAAGATCTCCTTGGTGTTTCCCCTCGGCCTTGCCCCATGGGTCCTCGC CGTGACTCTCCCCAACAAGTGGTATCAGAGCCGATGGTTCGTGGGACCAGCACCTATTGCACCGGACTGCCCTTGTTTAA TACTCCCTCCGTCCCTAATTATAAGCTAACATTGAGACTTTTTTTGTGTCACTAAATATAAGCTAACCTTGCAAAAGTTA ATATTTCTTTCCATATTCACCCTTGCATTTATTGGTAGTGGAGCACCACCATTAGTAGTACAATGATGAAAAAGTGTTAT CATAAATAGGGGTAAACATAGAAAGTTGTACATTTTTTTTGAAAACCAATGCATCAATTAAGGCTTTCTTAATAAGTGTG ATTTTTACAACTTTAGCTTATAATTAGGGACGGAGGGAGTACTATCTAGTCTAGTCTAGTAACAAATCTGAGAGGCCATA TTTATTCTTATATACTTGGTCAAGAACCATAACAATATCTATTTTGCATTTTTAGGAAAATTGTCTATCCACGATTTTCC CTAGTACTATCACCACCTTGCAGTTTCGACATATTTCCTTTGGTGGATGAAGTTATTCTTTATAAGGTTTACTATGTTAA CCTTAGTGGTTAACAGTAACTCAAAAGCTGTATATGTAATCTTGAGAAAATTAATTATTATATCATTTGCAATATATTTG ATTTGATTGTATCAGGCGGTAGTACCGCCAGAGTCAAAAGTTTCCGTCTGTTGTATGCATAATTCTTTAGGCAGTCGCCT CCATACATGTAAAATCTCTCCCATTAAAATTCTAAATAGCTCCCCTCCCAATGTTTTTTTTTGGTTCGGCCATGTCTTGA GTTGCTGCTTCAATGGAAATTTGGATTCATTTTCTTAGCATGATTAGATTATTCACTGCGAGAAGAATATCATAAATTTG CATTACAAGTGTGTTCCAGTTTTTGTTTTTGCTTTCATATAGTTTTAGGAGACTTCTGTTTGTATGTAGTGTTTGTTTGA AAAAAATTACATGAACTGACTACCCGACATATGGTTTTCAGCTTTACCGAAGGAAGCATGATCGATTCTTTTCGTGTGTC TGACTTTGATCAATCAGTTGGATATCGCATTGAGGATGCTGTTGACTTGAGTGGAAGTAGGTATTCTTATCATCAAACTT AGATAAGTTTTCATGTTACTAGCATATATGGGATATCTTGTATAATAATCTCTTGTCATAGCTAGTAATTCTTCTGCATC AAATTAATTTTATTCGAACGTGGCTTTCTTGTTTTCCTAAATGATATTTTATAGAAAATTTTAATAGCACGGATCACTAA CAAGTAAGAGTTAACTTTAACGAACAGAAAATATCAAAATTAAGAACCATATAATGTTTAATTTGAGAGAATAACCATAT ATTATCACCTAACGAACAATAATACCCTTTGTTGTTTCTTTCTCTATTAACCACTCATTGGTAGCAATTGATTAATCAGT AAAATGTTATAGGCACTGATAAGTTTCTTCTTAATTTTATGTAACTTTACAGATAGAACTTATATAAAATTGTTACCCTC TCACTGGTACCTAGTGGCAATGAATAATTTTCAAATTTCTTCTGAACCTCATGTATCTGATATTGAATTTCATTTACAAT CGGTAGTCAGTCATTCAGTTATAACAAATGAGTATGACTACTCAATAAATAGTAATGGCCACTCACATATTTCTTCTTAA TTTCGTGTGACTTAACAAATAGAACTTTATTTATAGCTGTTAGCGAACGCCTGCTGCGACGGGATCACAGCCGCAAAATC CCGCTATTCGCGGCCAATAGCGGCCTTCCCTTGTATGGGATTTCATTTTTGGGGGTCATCCGCGACAGGCCGCGATCCGC GATTGACTACTATGGTTATTTTATTATTTGTCATCTTTCCCCAACAATATTTAAGTCTTAAAATGGAGAGAAAGTTGGGG TTGCTTTTATTATAGAATAGGTTATAGATTTTTCGTAAATGGTTTGGACTTTGGACAAGTCTTTTGAAGACTCATAGAAG CATTGGTAAGGAGATTTATCTAGTAATTTGGGGTAGAGGGAGACCAAATACATGACTGAGAATTAAGTCCTCTTTTGACT CATGCTGCTGACCCCACTATGTGGGAAAAGATTTGGTTGTTGTTATTATATTTATAGGCATCTTTATTATTAACTTTTCC TATTTTATAATCATAAAATTTTACTGGATCTCTACAGACTATAATTATTGATCATAAAATCTGTCAGTGCGTAGCTTCTA ATAATCTCATCAGTCTCATGACATAGATATCATTAATAAATGCAATGGAAAGCATCCATGAAGGATGAGAAAATGGAATA GTTACACTCACACACACACACACGTGTACGAATGTACACATGCTGTTACTGTTGGATGAAGAACTAAATATTTAGGTTTA TAATGTGAATATTTTGTTTTCTTCATTCTTGCTAATGAGGAAAGACTTTTCTCCACCTTTTGATTCTCTAATGAATTTTT TTGATATATGATTCAGACTCAGCTTTTAACCCCTTAAAAGTAAGTAACCAGACAATTTCTCGTGTTCACATCGGTACTTT TGATAAGGTGAGTTTTTTTTGTTCTTTTTATCTAATGACTTTCAGCTTGGTAAATTAAAGGACTAGTAGCTGGTTATACA TCCTCTTATTTTGCAACTTTTTTCTTTTCCCTTTACAACTTAGTTGCCAATTTCACTTGATAAAAGCCCATTGACAAACC AAACAGAGCAAGAGGGCTTGCAATTGCAAAAGATTCAATCATCCAATCTGGTCACATTATTAAGTGGTAATACAGAAAAT CAGGAAGAGTCTGCCATGGCTGATGCCAGCCCTAGAACTGATATTTCAACAGATGGTGACACTGATGATAAGAATCAGCG GGTAGTGTTCCTTTAACCTTTCCTTCTATTTTCTTGCTTATTGGAACTTGTTTAGTTGTAACTATTCATCAAGGATTCAA TTGTGTGATTGATCTTAAATAATATTAAAAAAACAATGCCTTAGCAGAAGTCTTTTCCATTCTAGAATAGGTCTTTAGTT GATATTCTTGATCTTGACAAGCTGACATACATGTATTCCTTATGTGCAGTTTGATAGAAGTTCCCTTGCTGTTGGAGCTT CTGACTCCAGTGACAGATCAAAGGATAAAACAGATCAGAAGGTAAGTATATTTTGACGAGTAGAGGTCCAGTTTGGTACT CCAAAGACATGCATAAATTTCATTGGCCCTCCATTTATAAGTGCATCTAATTTTCTTCCAAAGGGATTTGCAACATCATT GTCCTTCAATATCTTTTTTTTTTCATCAAATTGATCCTTAAAATGACATCATGCTGGTCCTTGAAGGACCAATTTTGGCA CTAATAATCAATGAAGGACCAATTTTGAGGTCATTCATAGCTGGAGGACCAATGTGATAATATGTTGAAGGGCAAATGAA TATCATGTCATTGATATCTCAAAATTTTATACAATATTTGGTACATAATCATTATTTTCTATTTATTGCAGAGTCTTCGT AGGCTTGCTCAGAATCGTGAGGCTGCAAGAAAAAGCCGGTTGAGAAAGAAAGTAGGAATATAACTGATTCACCAACATTT GTTCTTGTGTATCGTTTTTTGTTTTCCTCTTTCTCCTTATATTTTGCTATAGTTTCATCATAACTTAGCCAGACAGGATA TGATTTTTATTTGGCATATATATAACTTGTGGATATTTTTCCTCTAGTTCTGATTCTCTGGGTCCTATATATTCTCACCG ATGTGTTTGTATGCATTTGGATGATTAGTTTGGATGTACAGGTTATGTGAGCTGCTAAAAAACTGAAAGTGGAATGGACA TTGGTTTTGCTTTATTATAATACTTTTTACGTAAAAAAAATTATTAGTTAAAGGGAATAGTGGAATGTACAAATAGAGGT AGAACAAGATATCCTAGAAAAATGAAAATTATAGATACAGTGTGGAACTTGAAAATACTATAAAATGCAGTAAGGCTACT CCTGGATATATGTGGTTAATTCTCTCTGGTAGGTTTTTCATCTTCTATATATTGAGAGGTAAGCTCTTTACAGCTGAAGG ATAATTCATGGTGAGAAAATACACAAAAATGAGTAACTCTTTCTTTGAGCTGGACTAATTTGAACATATATTGTAGTAAT TAAATATTATCTCCTAGTGGTTGGAGTTGCTCAGGGCGCTGTATTTTTGTGGTTGCAGTGTAGGACTACTGATTAAAATT CCCTTACACTTCACTCTTATTTTTATCCTCTCTAATGTTATAACAGTGGCAGTTAACTGGGTGTTTCATCTTAACCACAT TTAGAATGGAATCTTAAAATGATATTTGTATATGGGAATTGGAGTGGTAACTGGAAATCTGTGATAAGTGGCCGTAATAG TAGAATCCAATGATTCTTATATTTTTTAAACTTGTTTGACCTCTCTGATTGTTTTTAGAAATTGTTGTATTTACGTTGCT CCACTTGGCCATCAAGATGCAAGACTTGACAACTCAAGTTCATTACTTCACAGGCTTATGTCCAACAGTTGGAAAGTAGT CGTTTGAAGTTGACTCAACTGGAGCAAGAGCTTCAGAAAGCTAGGCAGCAGGTCAGGTTCAATAATTTCGTGAAATTAGA TCCTCTCTCTCTGTCTCTCTCTCATTCTTCCCTGGTGACACTCTTCTTTTCCAATCATGTTCTACTTCAACCAAAATATT TTGTTCTTATCCCCGCAGGGAATCTTTATATCAAACTCAGGTGATCAGGCACATTCAAACAGTGGAAATGGTATCCTTCT TTCTAAACTAAGATATTCATTTCATGAATTTTGATGTCACGATATGTCTGTTAAAAAAAGTAGTGGTGGAATTGATGTAG CAAGCTATTTCACAAAGCAGATTTAATACATAACAACTACAATGTTTTACAGGGGCCATGGCATTTGATGTTGAATACGC AAGGTGGCTGGAAGAGCAGAATCGGCTAATTAACGAGCTAAGAGCAGCTGTAAATTCTCATGCGAGTGACACAGAACTTC GCATGATTCTTGATGGTATAATGGCACATTATGATGAGATATTTAAGATGAAGATCGTTGCAGCTAAGGCTGATGTCTTC CATCTGTTGTCTGGCATGTGGAAAACACCAGCTGAAAGGTGTTTTCTATGGCTTGGTGGCTTTCGATCATCCGAACTCCT TAAGGTGAGCTTGTAGTGGGTTTATTGTTCTCATGGTTAACTTAAAGATATTATGGATTTTCATACCAGTAGTTTTTCCT GGTAACATACAGAGTAAAAACTCCTATGGTTTTTTATTGATTTAAGATAGATATAGTTTGTTTAATCTCAGATTTCGTGA AAGAGAAGAAATGGTGCACATTATTACTATGATCATGCTTTTTAGTTTAGAAGACTTAAGGGTGCTTGTTGTAAATTGTA CTCATCAATAGAAAGTTTTCTTTACGCCACTGATGATGTAGCTGCAAGGTTTGACTTTTGTTTGGAAGTTAGGTTTACGT GGGATCCAAACACAATAAGACAAGGGTAAACACATTCAGGACAGAATAACTACATATCATGTCTTTTCCATTTGCCCTGC TTATATGACTTTCTTTTTGTTTCTCTCAAGTTAAATTAACATGCCTAAGAGGTTTGAACCATCATTAATGGTGCTCTGAT TGTTCTCCTCAATACCTCATCTCTAATTTCGCAGAAACCAACTTTGTAATCGGCTTTTGAAATTGCCCATACATCTATGT TCTTTTTTGGGATAACTTCATATGAAACAACAACAACAACCAACAACAACAACAACAACAACAATAATAATAAAAATAAT AATAATAATAATAATAATAATAATAAATATAATTATGAATAACTATTGTTTGAATCCTGTTGCCAGAATCTTTGGATGAC TTCTGTTCTTTTCTTTTATTATGGCACTTGCCTCAAAAAGAAAAACAACACAGGTTAAATCATAACGGCTCAAAATTCTG GGCATCAAACTTCAATTATATCTACCATAAAAAGGTGATTCATTCTCAATTTACACATGATAACATAAACACACATGCAT AGTGTATATCTTTATTTTTAAACTTTGTAAATACATGTTTCTCATAACTGTTGTGAAAGAATTTTAATATCTGAGATCTG GGATCATTTATTAGTTAAACCTTTGACTTGACTGCCATGAATTTGGTTGCAGCTTCTGGTAAATCAATTGGAACCTCTCA CAGAGCAGCAGCTAGTGGGTATTACCAACTTGCAGCAATCTTCCCAACAAGCAGAAGATGCGCTGTCTCAAGGCATGGAA GCATTGCAACAGTCCCTTTCGGAGACATTGTCCACCGGATCACCTGGCTCCTCTGGTTCATCAGGAAATGTGGCAAATTA CATGGGTCAAATGGCTATGGCAATGGGTAAGCTAGGGACACTCGAGGGGTTTATTCGGCAGGTAAACTTTTCTCACTTGC ACATCTATCAAATTGGTTTGATTCATTTTTCTCAAGTAATTTAAGTCTTTTTTAACAAAAATGATAAGTGTCTACCCAAA ATTAGTAGAGTGAGAAAGAAAGAGGAGAGAGAAGTGATATATGATGTGATGTGATAGGAAGAGAGGTATAGTGAGAGAAT TTGGGTGTATTAGGGTGTCGTTACTGTTTAGGTGTCTATATATCAAAGTTGGTTTTTTAATCCAACCTTACCTTCCTAGT AGTTTTTATGATTGATGAACTGGCTCTAGACAAATAGAAATGCTTCACTTCCTTAGGACAATTTCTGGGGGCAGGGAATT TCATATTTTTGGTGCTAGTTTAAACAGTTCTGGTGCACCTATGCCTTTTCAACAAGTTCTAGAAAAGGACCAAGAAAATG CTCTTTCATTTCATGGAAAATTATTGATAAGAAACATTAACAATTCCAGAGTATTATAAGTTTATAACTTACTGTTCTTT ATTTCTGTGGTGGTTATTTGAAGGCTGACAATTTGCGCCAGCAGACGCTGCAACAAATTCACCGAATATTGACAACTCGC CAATCGGCCCGCGCACTCCTTGCCATCAATGACTACTTTTCTAGGCTGCGTGCTCTTAGCTCCCTCTGGCTTGCCCGCCC AAGAGATTGATGAGTGATAAATAGCATGTCAAGTTCATTTTCATGGATCTGGCACCAGGAATACTTTGTTATCATAGGTT TAATTTTACTGTGTTGTACTTTTCAGGTTACTGATATCAGTGTTCATCTAGTCACATAATCTAGAAACTGAATTGTTGAC AAGAGTATTGTATCTTGTTTATTACCAATAATGTTGTCCATTGTAAGAGTAGTTGAAGGGCTTTGTGTTTATTTCATTCA AAGTAGTTTGGATGTGATAAATTTGAATGTTTGGTTCACTTGCTAGAGTTTTCCCACTATCTGAAATAGAATCATAACTT TGTGAGTGACAAGAAAATTGTTGAGTACTCAATTTTTGTTTA
CDS sequence (LotjaGi3g1v0108100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATGCCAGCCCTAGAACTGATATTTCAACAGATGGTGACACTGATGATAAGAATCAGCGGTTTGATAGAAGTTC CCTTGCTGTTGGAGCTTCTGACTCCAGTGACAGATCAAAGGATAAAACAGATCAGAAGAGTCTTCGTAGGCTTGCTCAGA ATCGTGAGGCTGCAAGAAAAAGCCGGTTGAGAAAGAAAGCTTATGTCCAACAGTTGGAAAGTAGTCGTTTGAAGTTGACT CAACTGGAGCAAGAGCTTCAGAAAGCTAGGCAGCAGGGAATCTTTATATCAAACTCAGGTGATCAGGCACATTCAAACAG TGGAAATGGGGCCATGGCATTTGATGTTGAATACGCAAGGTGGCTGGAAGAGCAGAATCGGCTAATTAACGAGCTAAGAG CAGCTGTAAATTCTCATGCGAGTGACACAGAACTTCGCATGATTCTTGATGGTATAATGGCACATTATGATGAGATATTT AAGATGAAGATCGTTGCAGCTAAGGCTGATGTCTTCCATCTGTTGTCTGGCATGTGGAAAACACCAGCTGAAAGGTGTTT TCTATGGCTTGGTGGCTTTCGATCATCCGAACTCCTTAAGCTTCTGGTAAATCAATTGGAACCTCTCACAGAGCAGCAGC TAGTGGGTATTACCAACTTGCAGCAATCTTCCCAACAAGCAGAAGATGCGCTGTCTCAAGGCATGGAAGCATTGCAACAG TCCCTTTCGGAGACATTGTCCACCGGATCACCTGGCTCCTCTGGTTCATCAGGAAATGTGGCAAATTACATGGGTCAAAT GGCTATGGCAATGGGTAAGCTAGGGACACTCGAGGGGTTTATTCGGCAGGCTGACAATTTGCGCCAGCAGACGCTGCAAC AAATTCACCGAATATTGACAACTCGCCAATCGGCCCGCGCACTCCTTGCCATCAATGACTACTTTTCTAGGCTGCGTGCT CTTAGCTCCCTCTGGCTTGCCCGCCCAAGAGATTGA
Protein sequence (LotjaGi3g1v0108100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADASPRTDISTDGDTDDKNQRFDRSSLAVGASDSSDRSKDKTDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLT QLEQELQKARQQGIFISNSGDQAHSNSGNGAMAFDVEYARWLEEQNRLINELRAAVNSHASDTELRMILDGIMAHYDEIF KMKIVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQ SLSETLSTGSPGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQIHRILTTRQSARALLAINDYFSRLRA LSSLWLARPRD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 48 | 48 | - | – | |
| PANTHER | 3 | 331 | 329 | 2.9E-212 | – | |
| PANTHER | 3 | 331 | 329 | 2.9E-212 | – | |
| MobiDBLite | 10 | 24 | 15 | - | – | |
| SMART | 42 | 105 | 64 | 1.5E-7 | ||
| ProSiteProfiles | 44 | 88 | 45 | 9.415 | ||
| SUPERFAMILY | 46 | 89 | 44 | 4.0E-7 | – | |
| Gene3D | 46 | 93 | 48 | 1.4E-9 | – | |
| Pfam | 46 | 88 | 43 | 4.8E-7 | ||
| ProSitePatterns | 49 | 64 | 16 | - | ||
| Coils | 65 | 92 | 28 | - | – | |
| ProSiteProfiles | 111 | 328 | 218 | 34.031 | ||
| Coils | 122 | 142 | 21 | - | – | |
| Pfam | 129 | 203 | 75 | 3.4E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0108100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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