Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0108100 |
Transcript ID | LotjaGi3g1v0108100.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | transcription factor-like protein; TAIR: AT3G12250.1 TGACG motif-binding factor 6; Swiss-Prot: sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1); TrEMBL-Plants: tr|Q93XA1|Q93XA1_PHAVU TGA-type basic leucine zipper protein TGA2.1; Found in the gene: LotjaGi3g1v0108100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13317747..13322061) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGATGCCAGCCCTAGAACTGATATTTCAACAGATGGTGACACTGATGATAAGAATCAGCGGGTAGTGTTCCTTTA ACCTTTCCTTCTATTTTCTTGCTTATTGGAACTTGTTTAGTTGTAACTATTCATCAAGGATTCAATTGTGTGATTGATCT TAAATAATATTAAAAAAACAATGCCTTAGCAGAAGTCTTTTCCATTCTAGAATAGGTCTTTAGTTGATATTCTTGATCTT GACAAGCTGACATACATGTATTCCTTATGTGCAGTTTGATAGAAGTTCCCTTGCTGTTGGAGCTTCTGACTCCAGTGACA GATCAAAGGATAAAACAGATCAGAAGGTAAGTATATTTTGACGAGTAGAGGTCCAGTTTGGTACTCCAAAGACATGCATA AATTTCATTGGCCCTCCATTTATAAGTGCATCTAATTTTCTTCCAAAGGGATTTGCAACATCATTGTCCTTCAATATCTT TTTTTTTTCATCAAATTGATCCTTAAAATGACATCATGCTGGTCCTTGAAGGACCAATTTTGGCACTAATAATCAATGAA GGACCAATTTTGAGGTCATTCATAGCTGGAGGACCAATGTGATAATATGTTGAAGGGCAAATGAATATCATGTCATTGAT ATCTCAAAATTTTATACAATATTTGGTACATAATCATTATTTTCTATTTATTGCAGAGTCTTCGTAGGCTTGCTCAGAAT CGTGAGGCTGCAAGAAAAAGCCGGTTGAGAAAGAAAGTAGGAATATAACTGATTCACCAACATTTGTTCTTGTGTATCGT TTTTTGTTTTCCTCTTTCTCCTTATATTTTGCTATAGTTTCATCATAACTTAGCCAGACAGGATATGATTTTTATTTGGC ATATATATAACTTGTGGATATTTTTCCTCTAGTTCTGATTCTCTGGGTCCTATATATTCTCACCGATGTGTTTGTATGCA TTTGGATGATTAGTTTGGATGTACAGGTTATGTGAGCTGCTAAAAAACTGAAAGTGGAATGGACATTGGTTTTGCTTTAT TATAATACTTTTTACGTAAAAAAAATTATTAGTTAAAGGGAATAGTGGAATGTACAAATAGAGGTAGAACAAGATATCCT AGAAAAATGAAAATTATAGATACAGTGTGGAACTTGAAAATACTATAAAATGCAGTAAGGCTACTCCTGGATATATGTGG TTAATTCTCTCTGGTAGGTTTTTCATCTTCTATATATTGAGAGGTAAGCTCTTTACAGCTGAAGGATAATTCATGGTGAG AAAATACACAAAAATGAGTAACTCTTTCTTTGAGCTGGACTAATTTGAACATATATTGTAGTAATTAAATATTATCTCCT AGTGGTTGGAGTTGCTCAGGGCGCTGTATTTTTGTGGTTGCAGTGTAGGACTACTGATTAAAATTCCCTTACACTTCACT CTTATTTTTATCCTCTCTAATGTTATAACAGTGGCAGTTAACTGGGTGTTTCATCTTAACCACATTTAGAATGGAATCTT AAAATGATATTTGTATATGGGAATTGGAGTGGTAACTGGAAATCTGTGATAAGTGGCCGTAATAGTAGAATCCAATGATT CTTATATTTTTTAAACTTGTTTGACCTCTCTGATTGTTTTTAGAAATTGTTGTATTTACGTTGCTCCACTTGGCCATCAA GATGCAAGACTTGACAACTCAAGTTCATTACTTCACAGGCTTATGTCCAACAGTTGGAAAGTAGTCGTTTGAAGTTGACT CAACTGGAGCAAGAGCTTCAGAAAGCTAGGCAGCAGGTCAGGTTCAATAATTTCGTGAAATTAGATCCTCTCTCTCTGTC TCTCTCTCATTCTTCCCTGGTGACACTCTTCTTTTCCAATCATGTTCTACTTCAACCAAAATATTTTGTTCTTATCCCCG CAGGGAATCTTTATATCAAACTCAGGTGATCAGGCACATTCAAACAGTGGAAATGGTATCCTTCTTTCTAAACTAAGATA TTCATTTCATGAATTTTGATGTCACGATATGTCTGTTAAAAAAAGTAGTGGTGGAATTGATGTAGCAAGCTATTTCACAA AGCAGATTTAATACATAACAACTACAATGTTTTACAGGGGCCATGGCATTTGATGTTGAATACGCAAGGTGGCTGGAAGA GCAGAATCGGCTAATTAACGAGCTAAGAGCAGCTGTAAATTCTCATGCGAGTGACACAGAACTTCGCATGATTCTTGATG GTATAATGGCACATTATGATGAGATATTTAAGATGAAGATCGTTGCAGCTAAGGCTGATGTCTTCCATCTGTTGTCTGGC ATGTGGAAAACACCAGCTGAAAGGTGTTTTCTATGGCTTGGTGGCTTTCGATCATCCGAACTCCTTAAGGTGAGCTTGTA GTGGGTTTATTGTTCTCATGGTTAACTTAAAGATATTATGGATTTTCATACCAGTAGTTTTTCCTGGTAACATACAGAGT AAAAACTCCTATGGTTTTTTATTGATTTAAGATAGATATAGTTTGTTTAATCTCAGATTTCGTGAAAGAGAAGAAATGGT GCACATTATTACTATGATCATGCTTTTTAGTTTAGAAGACTTAAGGGTGCTTGTTGTAAATTGTACTCATCAATAGAAAG TTTTCTTTACGCCACTGATGATGTAGCTGCAAGGTTTGACTTTTGTTTGGAAGTTAGGTTTACGTGGGATCCAAACACAA TAAGACAAGGGTAAACACATTCAGGACAGAATAACTACATATCATGTCTTTTCCATTTGCCCTGCTTATATGACTTTCTT TTTGTTTCTCTCAAGTTAAATTAACATGCCTAAGAGGTTTGAACCATCATTAATGGTGCTCTGATTGTTCTCCTCAATAC CTCATCTCTAATTTCGCAGAAACCAACTTTGTAATCGGCTTTTGAAATTGCCCATACATCTATGTTCTTTTTTGGGATAA CTTCATATGAAACAACAACAACAACCAACAACAACAACAACAACAACAATAATAATAAAAATAATAATAATAATAATAAT AATAATAATAAATATAATTATGAATAACTATTGTTTGAATCCTGTTGCCAGAATCTTTGGATGACTTCTGTTCTTTTCTT TTATTATGGCACTTGCCTCAAAAAGAAAAACAACACAGGTTAAATCATAACGGCTCAAAATTCTGGGCATCAAACTTCAA TTATATCTACCATAAAAAGGTGATTCATTCTCAATTTACACATGATAACATAAACACACATGCATAGTGTATATCTTTAT TTTTAAACTTTGTAAATACATGTTTCTCATAACTGTTGTGAAAGAATTTTAATATCTGAGATCTGGGATCATTTATTAGT TAAACCTTTGACTTGACTGCCATGAATTTGGTTGCAGCTTCTGGTAAATCAATTGGAACCTCTCACAGAGCAGCAGCTAG TGGGTATTACCAACTTGCAGCAATCTTCCCAACAAGCAGAAGATGCGCTGTCTCAAGGCATGGAAGCATTGCAACAGTCC CTTTCGGAGACATTGTCCACCGGATCACCTGGCTCCTCTGGTTCATCAGGAAATGTGGCAAATTACATGGGTCAAATGGC TATGGCAATGGGTAAGCTAGGGACACTCGAGGGGTTTATTCGGCAGGTAAACTTTTCTCACTTGCACATCTATCAAATTG GTTTGATTCATTTTTCTCAAGTAATTTAAGTCTTTTTTAACAAAAATGATAAGTGTCTACCCAAAATTAGTAGAGTGAGA AAGAAAGAGGAGAGAGAAGTGATATATGATGTGATGTGATAGGAAGAGAGGTATAGTGAGAGAATTTGGGTGTATTAGGG TGTCGTTACTGTTTAGGTGTCTATATATCAAAGTTGGTTTTTTAATCCAACCTTACCTTCCTAGTAGTTTTTATGATTGA TGAACTGGCTCTAGACAAATAGAAATGCTTCACTTCCTTAGGACAATTTCTGGGGGCAGGGAATTTCATATTTTTGGTGC TAGTTTAAACAGTTCTGGTGCACCTATGCCTTTTCAACAAGTTCTAGAAAAGGACCAAGAAAATGCTCTTTCATTTCATG GAAAATTATTGATAAGAAACATTAACAATTCCAGAGTATTATAAGTTTATAACTTACTGTTCTTTATTTCTGTGGTGGTT ATTTGAAGGCTGACAATTTGCGCCAGCAGACGCTGCAACAAATTCACCGAATATTGACAACTCGCCAATCGGCCCGCGCA CTCCTTGCCATCAATGACTACTTTTCTAGGCTGCGTGCTCTTAGCTCCCTCTGGCTTGCCCGCCCAAGAGATTGA
CDS sequence (LotjaGi3g1v0108100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATGCCAGCCCTAGAACTGATATTTCAACAGATGGTGACACTGATGATAAGAATCAGCGGTTTGATAGAAGTTC CCTTGCTGTTGGAGCTTCTGACTCCAGTGACAGATCAAAGGATAAAACAGATCAGAAGAGTCTTCGTAGGCTTGCTCAGA ATCGTGAGGCTGCAAGAAAAAGCCGGTTGAGAAAGAAAGCTTATGTCCAACAGTTGGAAAGTAGTCGTTTGAAGTTGACT CAACTGGAGCAAGAGCTTCAGAAAGCTAGGCAGCAGGGAATCTTTATATCAAACTCAGGTGATCAGGCACATTCAAACAG TGGAAATGGGGCCATGGCATTTGATGTTGAATACGCAAGGTGGCTGGAAGAGCAGAATCGGCTAATTAACGAGCTAAGAG CAGCTGTAAATTCTCATGCGAGTGACACAGAACTTCGCATGATTCTTGATGGTATAATGGCACATTATGATGAGATATTT AAGATGAAGATCGTTGCAGCTAAGGCTGATGTCTTCCATCTGTTGTCTGGCATGTGGAAAACACCAGCTGAAAGGTGTTT TCTATGGCTTGGTGGCTTTCGATCATCCGAACTCCTTAAGCTTCTGGTAAATCAATTGGAACCTCTCACAGAGCAGCAGC TAGTGGGTATTACCAACTTGCAGCAATCTTCCCAACAAGCAGAAGATGCGCTGTCTCAAGGCATGGAAGCATTGCAACAG TCCCTTTCGGAGACATTGTCCACCGGATCACCTGGCTCCTCTGGTTCATCAGGAAATGTGGCAAATTACATGGGTCAAAT GGCTATGGCAATGGGTAAGCTAGGGACACTCGAGGGGTTTATTCGGCAGGCTGACAATTTGCGCCAGCAGACGCTGCAAC AAATTCACCGAATATTGACAACTCGCCAATCGGCCCGCGCACTCCTTGCCATCAATGACTACTTTTCTAGGCTGCGTGCT CTTAGCTCCCTCTGGCTTGCCCGCCCAAGAGATTGA
Protein sequence (LotjaGi3g1v0108100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADASPRTDISTDGDTDDKNQRFDRSSLAVGASDSSDRSKDKTDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLT QLEQELQKARQQGIFISNSGDQAHSNSGNGAMAFDVEYARWLEEQNRLINELRAAVNSHASDTELRMILDGIMAHYDEIF KMKIVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQ SLSETLSTGSPGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQIHRILTTRQSARALLAINDYFSRLRA LSSLWLARPRD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 48 | 48 | - | – | |
PANTHER | 3 | 331 | 329 | 2.9E-212 | – | |
PANTHER | 3 | 331 | 329 | 2.9E-212 | – | |
MobiDBLite | 10 | 24 | 15 | - | – | |
SMART | 42 | 105 | 64 | 1.5E-7 | ||
ProSiteProfiles | 44 | 88 | 45 | 9.415 | ||
SUPERFAMILY | 46 | 89 | 44 | 4.0E-7 | – | |
Gene3D | 46 | 93 | 48 | 1.4E-9 | – | |
Pfam | 46 | 88 | 43 | 4.8E-7 | ||
ProSitePatterns | 49 | 64 | 16 | - | ||
Coils | 65 | 92 | 28 | - | – | |
ProSiteProfiles | 111 | 328 | 218 | 34.031 | ||
Coils | 122 | 142 | 21 | - | – | |
Pfam | 129 | 203 | 75 | 3.4E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0108100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…