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LotjaGi3g1v0108300.4

Overview

Field Value
Gene ID LotjaGi3g1v0108300
Transcript ID LotjaGi3g1v0108300.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description 50S ribosomal protein L27; TAIR: AT5G15220.1 Ribosomal protein L27 family protein; Swiss-Prot: sp|Q6G507|RL27_BARHE 50S ribosomal protein L27; TrEMBL-Plants: tr|I3S749|I3S749_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0108300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:13341383..13342313) extracted from Lotus japonicus Gifu genome v1.2.

TTACCAACATTCTTTTAGGCTGTTAAGGATACACAGGTTGGTGGATTGTATCTGTTTATATGTTTTTAGATATCTTATCC TTATTATAATTTCTTGCCCGCATAGTAATTATGCCAATACTTTGATGGTCACAGAACATAGGACTAGTATGAGCAGCGTA TTTAACTCATCGTCTTGCAACAACTGATTCATTCTGTTTGGTAGTTGTTACTGCAAACAAACCATGCATCATTGATTAGC ATTCTAGATATTTGAATTTGAATTTTTTTCGGATGTTATGTGTATTTCAGGCAGTGTCTTTATCACATAGAAAACATGAA TTTTGGAGCATCATTGTGCAGACGATTGAGTATCAAGGAACTTGTGACAAATGTTCCTGTATACAGAAGCACTGGTGGTA TAACTTCATGATCTTGTATTGGCTATTGTATAATAACTCACCAAAAAAAAGTTAGACTAATGACTTATTGGTTCATTATT TTAGATGTTTCTGGAGAAGGGTTGAGTATGGTTTTCAGTCGTTGGGCCTCCAAGAAGACAGCTGGTTCCACAAAGAATGG ACGGGACTCAAAACCCAAGAACCTAGGAGTGAAGAAATTTGGTGGGGAGGTATGAGTTGTTTTATGCTTTAAGCAAGAAT ATATGAATTTTATGACATGCTGTCAGGGGAAGAGAACTGAATCTGGGTTTTATGCAGAGGGTGATACCTGGAAATATCAT TGTTAGACAGCGTGGTACTCGTTTTCATCCCGGAAACTATGTTGGAATAGGGAAAGATCATACTCTGTTTGCTTTGAAGC AGGGCTTGGTGAAGTTTGAACGGAACAAGCTGACCGGTCGCAAGTGGGTGCATGTTGAGCCTAAGGAAGGTCATGTCCTC CACCCTGTGTATGAAAGTGCTTCTGAATCTGAACTTAAAGTTGCTGTCTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0108300.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATTTTGGAGCATCATTGTGCAGACGATTGAGTATCAAGGAACTTGTGACAAATGTTCCTGTATACAGAAGCACTGG TGATGTTTCTGGAGAAGGGTTGAGTATGGTTTTCAGTCGTTGGGCCTCCAAGAAGACAGCTGGTTCCACAAAGAATGGAC GGGACTCAAAACCCAAGAACCTAGGAGTGAAGAAATTTGGTGGGGAGAGGGTGATACCTGGAAATATCATTGTTAGACAG CGTGGTACTCGTTTTCATCCCGGAAACTATGTTGGAATAGGGAAAGATCATACTCTGTTTGCTTTGAAGCAGGGCTTGGT GAAGTTTGAACGGAACAAGCTGACCGGTCGCAAGTGGGTGCATGTTGAGCCTAAGGAAGGTCATGTCCTCCACCCTGTGT ATGAAAGTGCTTCTGAATCTGAACTTAAAGTTGCTGTCTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0108300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNFGASLCRRLSIKELVTNVPVYRSTGDVSGEGLSMVFSRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQ RGTRFHPGNYVGIGKDHTLFALKQGLVKFERNKLTGRKWVHVEPKEGHVLHPVYESASESELKVAV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR15893:SF10
1 143 143 1.7E-89 –
PANTHER
PTHR15893
1 143 143 1.7E-89
IPR001684
Hamap
MF_00539
41 125 85 25.84
IPR001684
SUPERFAMILY
SSF110324
42 120 79 3.4E-32 –
Pfam
PF01016
42 122 81 1.2E-36
IPR001684
TIGRFAM
TIGR00062
42 122 81 4.3E-35
IPR001684
PRINTS
PR00063
44 68 25 8.6E-36
IPR001684
Gene3D
G3DSA:2.40.50.100
61 131 71 1.5E-31 –
PRINTS
PR00063
69 93 25 8.6E-36
IPR001684
ProSitePatterns
PS00831
74 88 15 -
IPR018261
PRINTS
PR00063
94 118 25 8.6E-36
IPR001684

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0005840
Cellular component Ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0108300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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