Domain Predictions — View

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SSF110324

Source: SUPERFAMILY

Description

No description is available for this domain.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 15

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0091129.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Glycine max] gi\|356539482\|ref\|XP_003538227.1\|	Domains G3DSA:2.40.50.100 IPR001684 NON_CYTOPLASMIC_DOMAIN PF01016 PR00063 PTHR15893 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF110324 SignalP-TM_GRAM_POSITIVE mobidb-lite	13
Lj0g3v0091139.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Glycine max] gi\|356539482\|ref\|XP_003538227.1\|	Domains Coil G3DSA:2.40.50.100 IPR001684 IPR018261 MF_00539 NON_CYTOPLASMIC_DOMAIN PD003114 PF01016 PR00063 PS00831 PTHR15893 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF110324 SignalP-TM_GRAM_POSITIVE TIGR00062	18
Lj0g3v0217619.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 50S ribosomal protein L27-like [Cicer arietinum] gi\|502124819\|ref\|XP_004498686.1\|	Domains G3DSA:2.40.50.100 IPR001684 IPR018261 PD003114 PF01016 PR00063 PS00831 PTHR15893 PTHR15893:SF2 SSF110324 TIGR00062 mobidb-lite	12
Lj1g3v4407610.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: exosome complex component rrp4-like [Cicer arietinum] gi\|502115055\|ref\|XP_004495115.1\|	Domains Coil IPR004088 IPR012340 IPR026699 PF15985 PTHR21321 PTHR21321:SF4 SSF110324 SSF50249 SSF54791 cd05789 mobidb-lite	12
Lj5g3v1314600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Nucleic acid-binding, OB-fold-like protein isoform 1 [Theobroma cacao] gi\|508718921\|gb\|EOY10818.1\|	Domains IPR003029 IPR012340 IPR019495 IPR025721 PF10447 PF14382 PS50126 PTHR12686 PTHR12686:SF8 SSF110324 SSF50249 cd05791 mobidb-lite	13
LotjaGi1g1v0731200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component RRP4; TAIR: AT1G03360.1 ribosomal RNA processing 4; Swiss-Prot: sp\|Q9ZVT7\|RRP4_ARATH Exosome complex component RRP4 homolog; TrEMBL-Plants: tr\|B7FL19\|B7FL19_MEDTR Ribosomal RNA processing protein; Found in the gene: LotjaGi1g1v0731200	Domains Coil G3DSA:2.40.50.100 G3DSA:2.40.50.140 IPR004088 IPR012340 IPR026699 IPR036612 PF15985 PTHR21321 PTHR21321:SF4 SSF110324 SSF50249 SSF54791 cd05789 mobidb-lite	15
LotjaGi1g1v0731200.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component RRP4; TAIR: AT1G03360.1 ribosomal RNA processing 4; Swiss-Prot: sp\|Q9ZVT7\|RRP4_ARATH Exosome complex component RRP4 homolog; TrEMBL-Plants: tr\|B7FL19\|B7FL19_MEDTR Ribosomal RNA processing protein; Found in the gene: LotjaGi1g1v0731200	Domains Coil G3DSA:2.40.50.100 G3DSA:2.40.50.140 IPR012340 IPR026699 PTHR21321 PTHR21321:SF4 SSF110324 SSF50249	9
LotjaGi2g1v0298600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component Rrp4; TAIR: AT2G25355.1 PNAS-3-like protein; Swiss-Prot: sp\|Q7KWX9\|EXOS3_DICDI Putative exosome complex component rrp40; TrEMBL-Plants: tr\|I1JE93\|I1JE93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0298600	Domains G3DSA:2.40.50.100 G3DSA:2.40.50.140 G3DSA:3.30.1370.10 IPR004088 IPR012340 IPR026699 IPR036612 IPR037319 PF15985 PTHR21321 PTHR21321:SF1 SSF110324 SSF50249 SSF54791 cd05790	15
LotjaGi2g1v0298600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component Rrp4; TAIR: AT2G25355.1 PNAS-3-like protein; Swiss-Prot: sp\|Q7KWX9\|EXOS3_DICDI Putative exosome complex component rrp40; TrEMBL-Plants: tr\|I1JE93\|I1JE93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0298600	Domains G3DSA:2.40.50.100 G3DSA:2.40.50.140 G3DSA:3.30.1370.10 IPR004088 IPR012340 IPR026699 IPR036612 IPR037319 PF15985 PTHR21321 PTHR21321:SF1 SSF110324 SSF50249 SSF54791 cd05790	15
LotjaGi2g1v0298600.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component RRP40; TAIR: AT4G32175.1 PNAS-3-like protein; Swiss-Prot: sp\|Q7KWX9\|EXOS3_DICDI Putative exosome complex component rrp40; TrEMBL-Plants: tr\|C6T951\|C6T951_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0298600	Domains G3DSA:2.40.50.100 G3DSA:2.40.50.140 IPR012340 IPR026699 IPR037319 PTHR21321 PTHR21321:SF1 SSF110324 SSF50249 cd05790	10
LotjaGi3g1v0108300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	50S ribosomal protein L27; TAIR: AT5G15220.1 Ribosomal protein L27 family protein; Swiss-Prot: sp\|Q6G507\|RL27_BARHE 50S ribosomal protein L27; TrEMBL-Plants: tr\|I3S749\|I3S749_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0108300	Domains G3DSA:2.40.50.100 IPR001684 IPR018261 MF_00539 PF01016 PR00063 PS00831 PTHR15893 PTHR15893:SF10 SSF110324 TIGR00062 mobidb-lite	12
LotjaGi3g1v0108300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	50S ribosomal protein L27; TAIR: AT5G15220.1 Ribosomal protein L27 family protein; Swiss-Prot: sp\|Q6G507\|RL27_BARHE 50S ribosomal protein L27; TrEMBL-Plants: tr\|I3S749\|I3S749_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0108300	Domains G3DSA:2.40.50.100 IPR001684 IPR018261 MF_00539 PF01016 PR00063 PS00831 PTHR15893 PTHR15893:SF10 SSF110324 TIGR00062	11
LotjaGi3g1v0108300.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	50S ribosomal protein L27; TAIR: AT5G15220.1 Ribosomal protein L27 family protein; Swiss-Prot: sp\|Q6G507\|RL27_BARHE 50S ribosomal protein L27; TrEMBL-Plants: tr\|I3S749\|I3S749_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0108300	Domains G3DSA:2.40.50.100 IPR001684 IPR018261 MF_00539 PF01016 PR00063 PS00831 PTHR15893 PTHR15893:SF10 SSF110324 TIGR00062	11
LotjaGi3g1v0113900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	50S ribosomal protein L27; TAIR: AT5G40950.1 ribosomal protein large subunit 27; Swiss-Prot: sp\|Q9FLN4\|RK27_ARATH 50S ribosomal protein L27, chloroplastic; TrEMBL-Plants: tr\|I3S326\|I3S326_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0113900	Domains Coil G3DSA:2.40.50.100 IPR001684 IPR018261 MF_00539 NON_CYTOPLASMIC_DOMAIN PF01016 PR00063 PS00831 PTHR15893 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF110324 SignalP-TM TIGR00062 mobidb-lite	18
LotjaGi5g1v0205900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Exosome complex component CSL4; TAIR: AT5G38890.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp\|Q9DAA6\|EXOS1_MOUSE Exosome complex component CSL4; TrEMBL-Plants: tr\|K7LJV1\|K7LJV1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0205900	Domains G3DSA:2.40.50.100 G3DSA:2.40.50.140 IPR003029 IPR012340 IPR019495 IPR025721 IPR039771 PF10447 PF14382 PS50126 PTHR12686 SSF110324 SSF50249 cd05791 mobidb-lite	15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	6.67