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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0108600 |
| Transcript ID | LotjaGi3g1v0108600.9 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase KEG; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|A0A0B2QMC9|A0A0B2QMC9_GLYSO E3 ubiquitin-protein ligase KEG; Found in the gene: LotjaGi3g1v0108600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13402970..13405194) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTGTTGCCTTTTGCTTCAGAAGTAAGCCTTTTTCATGCTCAGTCACTGATGTGGAGAAAGTTCCCCCTTTTGAGGT GGGGCAAGAAATTCATGTGATGCCATCTGTTACTCAGCCACGGCTCGGGTGGTCAAATGAATCACCAGCTACTGTTGGAA AAATAGTGAAAATTGATATGGATGGTGCTCTCAATGTAAGCTTAGTTTTTTTTTCCTCTTTTCCTCTTAATTTGTTTTTG CATGATATACTACACCTCTAATGACTTCTTCCAACTAAAACTTTTGAAGTGTGTTCCATAACTATAGCTATTAGCTAAAT AGGACCTAACACAGTTTTATGTGATACTGTTTAACCTGAAATAGACTCATTTTGGTATGTAAAGCGTATAGAGCCATATA AGCATTGCCTAGGAAATAGCCTTCTTTGGGGGGGTGGACTTTTGCTACTTTATGTGGCTAAAATCGAAGTTTGGCAGAAA AGATTTCGAACAGACCCAGTTGTATGTTGAATTTATGTTCTAGTTTTCACAGTATCTGGGTGCTACTGGTTTAAAACTCT AAATTGATTCCAAACTCGAATTTTTGAGCACAAGTTGATAAGTATTATTAATCTTATATTATAAAAATGAGTTGTCAGTT ATTACTAATATCATAATAGAAAAATGAGATGACAACTTTTGATGGGCAGTCTCCCAGAGACTGGGTATGAGAATTTGCCG ATCATTAAAGCTACAACTTTTGCATAAGTGGTCAAATAGTACTTGACGAGAACTTCCAAGGGCATGATCAGGCAAAAATC ATTTGATGAAAACCACCTCTATTTATCTTTGTTGATACTTCTTCCTATCTACGTTTGACATGAGAAATTGAGAGAGTTAG ATTAAAATATTGACCACCACTTTTACTGATTAACTAATCTTCTTATAGAGCATTTCATTGACAATGTTATTTCTTATTTC ATCCTGAGATTACAACAGACAAGTGATTTAGCTCGTTGTTCTGTTTGCAGGTGAAGGTTGCATGTAGGCAGAGCTTATGG AAAGTTTCTCCTGGAGATGCAGAACGGCTTCCAGGATTTGAAGTTGGGGATTGGGTGCGTTCAAAATCAAGCCTGGGAAC TAGACCAAATTATGACTGGAATAGTGTTGGGAGAGATAGTTTAGCAGTTGTGCATAGTGTTCAGGAGTCTGGATACTTGG AGTTGGCTAGCTGTTTCCGTAAAGGGAAGTGGATCACTCATTATACCGATGTTGAAAAGGTTCCTAGCTTCAAAGTCGGG CAGTATGTTAGGTTCCGAACTGGGTTGGTTGAACCGAGATGGGGTTGGAGAGGAGCCCAACCTGAATCTCAAGGGATTAT AACCAGTATTCATGCTGATGGAGAAGTCAGGGTCGCATTCTTTGGTTTGCCAGGACTGTGGAAAGGAGATCCTTCAGACC TGCAGATAGAGCAAATCTTTGAAGTGGGAGTGTGGGTGAGATTGAAAGATAACGCAAATAATTGGAAATCAATTGGGCCA GGTAGTGTTGGCGTCGTTCAAGGAATAGGGTATGAAGGAGATGAATTGGACAGAAGCACTTTTGTTGGCTTTTGTGGGGA GCAAGAAAAGTGGGTAGGACCAAGTTCCCATCTTGAAAGAGTTGACAAACTCCTTGTTGGACAGAAGGTTAGAGTCAAAC AATACGTAAAGCAACCAAGATTCGGATGGTCAGGGCACAGCCATGCAAGTATCGGGACTATACAAGCAGTTGATGCTGAT GGAAAACTTCGAATATACACACCGGCAGGTTCAAAAGCATGGATGTTGGACCCTTCAGAAGTTGATGTGGTAGAAGAGAA GGAGCTCTGTATTGGAGACTGGGTGAGGGTTAGATCATCAGTTTCAACCCCAACCCACCATTGGGGGGAAGTGAGTCATT CCAGCATTGGGGTGGTGCATCGGATGGAAGATGAGGATCTGCGGGTGGCGTTTTGTTTTATGGACAGGCTATGGCTTTGT AAGGCCGGGGAAATGGAACGGGTTAGGGCATTCAAAGTTGGGGACAAGGTAAAGATCAGAGATGGACTGGTAGCCCCAAG GTGGGGTTGGGGAATGGAGACACATGCTAGCAAGGGACAAGTAGTAGGGGTAGATGCAAATGGGAAAGTAAGAATAAGGT TCCGATGGAGGGAAGGGAGGCCCTGGATAGGAGACCCTGCAGATATTGCCCTTGATGAGAACTGA
CDS sequence (LotjaGi3g1v0108600.9) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGTTGCCTTTTGCTTCAGAAGTAAGCCTTTTTCATGCTCAGTCACTGATGTGGAGAAAGTTCCCCCTTTTGAGGT GGGGCAAGAAATTCATGTGATGCCATCTGTTACTCAGCCACGGCTCGGGTGGTCAAATGAATCACCAGCTACTGTTGGAA AAATAGTGAAAATTGATATGGATGGTGCTCTCAATGTGAAGGTTGCATGTAGGCAGAGCTTATGGAAAGTTTCTCCTGGA GATGCAGAACGGCTTCCAGGATTTGAAGTTGGGGATTGGGTGCGTTCAAAATCAAGCCTGGGAACTAGACCAAATTATGA CTGGAATAGTGTTGGGAGAGATAGTTTAGCAGTTGTGCATAGTGTTCAGGAGTCTGGATACTTGGAGTTGGCTAGCTGTT TCCGTAAAGGGAAGTGGATCACTCATTATACCGATGTTGAAAAGGTTCCTAGCTTCAAAGTCGGGCAGTATGTTAGGTTC CGAACTGGGTTGGTTGAACCGAGATGGGGTTGGAGAGGAGCCCAACCTGAATCTCAAGGGATTATAACCAGTATTCATGC TGATGGAGAAGTCAGGGTCGAGCAAATCTTTGAAGTGGGAGTGTGGGTGAGATTGAAAGATAACGCAAATAATTGGAAAT CAATTGGGCCAGGTAGTGTTGGCGTCGTTCAAGGAATAGGGTATGAAGGAGATGAATTGGACAGAAGCACTTTTGTTGGC TTTTGTGGGGAGCAAGAAAAGTGGGTAGGACCAAGTTCCCATCTTGAAAGAGTTGACAAACTCCTTGTTGGACAGAAGGT TAGAGTCAAACAATACGTAAAGCAACCAAGATTCGGATGGTCAGGGCACAGCCATGCAAGTATCGGGACTATACAAGCAG TTGATGCTGATGGAAAACTTCGAATATACACACCGGCAGGTTCAAAAGCATGGATGTTGGACCCTTCAGAAGTTGATGTG GTAGAAGAGAAGGAGCTCTGTATTGGAGACTGGGTGAGGGTTAGATCATCAGTTTCAACCCCAACCCACCATTGGGGGGA AGTGAGTCATTCCAGCATTGGGGTGGTGCATCGGATGGAAGATGAGGATCTGCGGGTGGCGTTTTGTTTTATGGACAGGC TATGGCTTTGTAAGGCCGGGGAAATGGAACGGGTTAGGGCATTCAAAGTTGGGGACAAGGTAAAGATCAGAGATGGACTG GTAGCCCCAAGGTGGGGTTGGGGAATGGAGACACATGCTAGCAAGGGACAAGTAGTAGGGGTAGATGCAAATGGGAAAGT AAGAATAAGGTTCCGATGGAGGGAAGGGAGGCCCTGGATAGGAGACCCTGCAGATATTGCCCTTGATGAGAACTGA
Protein sequence (LotjaGi3g1v0108600.9) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVAFCFRSKPFSCSVTDVEKVPPFEVGQEIHVMPSVTQPRLGWSNESPATVGKIVKIDMDGALNVKVACRQSLWKVSPG DAERLPGFEVGDWVRSKSSLGTRPNYDWNSVGRDSLAVVHSVQESGYLELASCFRKGKWITHYTDVEKVPSFKVGQYVRF RTGLVEPRWGWRGAQPESQGIITSIHADGEVRVEQIFEVGVWVRLKDNANNWKSIGPGSVGVVQGIGYEGDELDRSTFVG FCGEQEKWVGPSSHLERVDKLLVGQKVRVKQYVKQPRFGWSGHSHASIGTIQAVDADGKLRIYTPAGSKAWMLDPSEVDV VEEKELCIGDWVRVRSSVSTPTHHWGEVSHSSIGVVHRMEDEDLRVAFCFMDRLWLCKAGEMERVRAFKVGDKVKIRDGL VAPRWGWGMETHASKGQVVGVDANGKVRIRFRWREGRPWIGDPADIALDEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 450 | 450 | 7.1E-262 | – | |
| Pfam | 18 | 80 | 63 | 1.1E-8 | ||
| Pfam | 88 | 194 | 107 | 3.4E-11 | ||
| Pfam | 197 | 318 | 122 | 6.6E-20 | ||
| Pfam | 326 | 380 | 55 | 1.9E-6 | ||
| Pfam | 382 | 445 | 64 | 8.3E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0108600.9, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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